BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0582.p (262 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773917.1| TetR family transcription regulator protein ... 332 5e-89 ref|YP_004751496.1| putative TetR family transcriptional regulat... 252 5e-65 gb|ABK64055.1| putative tetR family regulatory protein [Janthino... 234 1e-59 ref|YP_001898231.1| TetR family transcriptional regulator [Ralst... 226 4e-57 ref|ZP_07675546.1| transcriptional regulator, TetR family [Ralst... 224 7e-57 >ref|YP_003773917.1| TetR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ62009.1| TetR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 209 Score = 332 bits (850), Expect = 5e-89, Method: Composition-based stats. Identities = 167/209 (79%), Positives = 192/209 (91%) Query: 54 MSASAKEPRWERRKQDRPQELLAAALELFVERGYAATRLEDVATRAGVSKGTLYLYFDGK 113 MSASAKEPRWERRKQDRPQELLAAAL+LFVERGYAATRLEDVA +AGVSKGTLYLYFD K Sbjct: 1 MSASAKEPRWERRKQDRPQELLAAALQLFVERGYAATRLEDVAAQAGVSKGTLYLYFDSK 60 Query: 114 ESLFKSVVRANVLPLLDQAEARIEGHAGSSAELLRDLILHWWQSASHSGVVGIAKLMVAE 173 ESLFKSVVRA++LPLLD+AEAR++ H G +A+LLR+LIL WWQ AS SG+ GIAKLM+AE Sbjct: 61 ESLFKSVVRAHMLPLLDEAEARVDSHDGHTADLLRELILGWWQGASRSGLKGIAKLMLAE 120 Query: 174 SGNFPELARFYHDEVTARGDATIVRVLERGMARGEFRRINADAMKKVIVAPLIMLMLWEQ 233 SGNFPELARFYH+E+T+RGDAT+VRVLERGMARGEFR ++A A+KKVI AP++MLMLW+Q Sbjct: 121 SGNFPELARFYHEEITSRGDATLVRVLERGMARGEFRPLDAHALKKVIAAPIMMLMLWDQ 180 Query: 234 SLAPCAATPIDPLAYLESMIDLCLNGLKA 262 SLAPCA PID AYL S+IDLC++GLKA Sbjct: 181 SLAPCAIAPIDSAAYLASLIDLCVHGLKA 209 >ref|YP_004751496.1| putative TetR family transcriptional regulator [Collimonas fungivorans Ter331] gb|AEK60673.1| putative transcriptional regulator, TetR family [Collimonas fungivorans Ter331] Length = 212 Score = 252 bits (643), Expect = 5e-65, Method: Composition-based stats. Identities = 121/203 (59%), Positives = 158/203 (77%) Query: 58 AKEPRWERRKQDRPQELLAAALELFVERGYAATRLEDVATRAGVSKGTLYLYFDGKESLF 117 + +PRW RRK+ RPQELLAAAL+LFVERG+AATRL DVA AGVSKGTLYLYF+ KE LF Sbjct: 6 SSKPRWARRKEARPQELLAAALDLFVERGFAATRLGDVAALAGVSKGTLYLYFESKEDLF 65 Query: 118 KSVVRANVLPLLDQAEARIEGHAGSSAELLRDLILHWWQSASHSGVVGIAKLMVAESGNF 177 K+VVR N+LP L +AE I+G+ G SA+L R+++L WW+ + + GI KL++AESGNF Sbjct: 66 KAVVRENILPALAEAEDIIDGYQGPSADLFREILLGWWEQIGATKLSGITKLLMAESGNF 125 Query: 178 PELARFYHDEVTARGDATIVRVLERGMARGEFRRINADAMKKVIVAPLIMLMLWEQSLAP 237 PELA F+ +EV+ R +A IVR+L+RG+ RGEFR I+ V++AP+IMLM+W+Q L P Sbjct: 126 PELAAFHREEVSERSEAMIVRLLQRGIERGEFRAIDVRQTANVLIAPVIMLMMWQQPLNP 185 Query: 238 CAATPIDPLAYLESMIDLCLNGL 260 C P+D +YL+S IDLCL+GL Sbjct: 186 CHVEPVDAGSYLDSFIDLCLHGL 208 >gb|ABK64055.1| putative tetR family regulatory protein [Janthinobacterium lividum] Length = 216 Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats. Identities = 112/202 (55%), Positives = 151/202 (74%) Query: 60 EPRWERRKQDRPQELLAAALELFVERGYAATRLEDVATRAGVSKGTLYLYFDGKESLFKS 119 +PRWERRK RPQELLAAAL+LFVERG+A+TRLEDVA RAGVSKGTLYLYF+ K+ LFK+ Sbjct: 8 KPRWERRKDARPQELLAAALDLFVERGFASTRLEDVAKRAGVSKGTLYLYFENKQELFKA 67 Query: 120 VVRANVLPLLDQAEARIEGHAGSSAELLRDLILHWWQSASHSGVVGIAKLMVAESGNFPE 179 VVR N++ + +AE + SSAELLR +++ WW+ + + G+ KLM+AE+ NFPE Sbjct: 68 VVRDNIVQSIGEAEDSMAASDSSSAELLRKVMMQWWEEFGATKLAGLTKLMLAEANNFPE 127 Query: 180 LARFYHDEVTARGDATIVRVLERGMARGEFRRINADAMKKVIVAPLIMLMLWEQSLAPCA 239 LA+FY++EV RG+ IV +LERGM RGEFR+++ + ++ AP+ MLM+W S PC Sbjct: 128 LAQFYNEEVVTRGNGLIVSLLERGMQRGEFRQVDPVLVSTILSAPVTMLMMWTHSFLPCE 187 Query: 240 ATPIDPLAYLESMIDLCLNGLK 261 IDPLAY+++ ID+ L L+ Sbjct: 188 VKNIDPLAYMDAFIDMSLRSLQ 209 >ref|YP_001898231.1| TetR family transcriptional regulator [Ralstonia pickettii 12J] gb|ACD25799.1| transcriptional regulator, TetR family [Ralstonia pickettii 12J] Length = 247 Score = 226 bits (575), Expect = 4e-57, Method: Composition-based stats. Identities = 107/205 (52%), Positives = 147/205 (71%) Query: 56 ASAKEPRWERRKQDRPQELLAAALELFVERGYAATRLEDVATRAGVSKGTLYLYFDGKES 115 + + RW RRK+ RPQEL+AAAL LFV RGYAATRLEDVA+ AGVSKGT+YLYF KE Sbjct: 6 SESSSKRWTRRKEARPQELVAAALNLFVARGYAATRLEDVASAAGVSKGTVYLYFANKEE 65 Query: 116 LFKSVVRANVLPLLDQAEARIEGHAGSSAELLRDLILHWWQSASHSGVVGIAKLMVAESG 175 LFK+VV+ N++P L + EA I+ G+S LL ++++ WW+ S G+ KL++AESG Sbjct: 66 LFKAVVQENLVPALAEGEALIDSFDGTSEALLHEILMGWWELIGESPASGLTKLLMAESG 125 Query: 176 NFPELARFYHDEVTARGDATIVRVLERGMARGEFRRINADAMKKVIVAPLIMLMLWEQSL 235 NFP+LA++YH+EV R D R+LERGMARGEFR +N D +VAP+I LM+W+ S Sbjct: 126 NFPDLAQYYHEEVIERCDRLFARILERGMARGEFRDVNIDLTTLTMVAPMIFLMMWKHSF 185 Query: 236 APCAATPIDPLAYLESMIDLCLNGL 260 PC+ ++P A++ ++ L L+G+ Sbjct: 186 GPCSHRELEPKAFITHVVSLLLHGV 210 >ref|ZP_07675546.1| transcriptional regulator, TetR family [Ralstonia sp. 5_7_47FAA] gb|EFP66143.1| transcriptional regulator, TetR family [Ralstonia sp. 5_7_47FAA] Length = 255 Score = 224 bits (572), Expect = 7e-57, Method: Composition-based stats. Identities = 108/213 (50%), Positives = 149/213 (69%) Query: 48 PVILFLMSASAKEPRWERRKQDRPQELLAAALELFVERGYAATRLEDVATRAGVSKGTLY 107 P + + + RW RRK+ RPQEL+AAAL LFV RGYAATRLEDVA+ AGVSKGT+Y Sbjct: 6 PTAVTDQDSDSSSKRWTRRKEARPQELVAAALNLFVARGYAATRLEDVASAAGVSKGTVY 65 Query: 108 LYFDGKESLFKSVVRANVLPLLDQAEARIEGHAGSSAELLRDLILHWWQSASHSGVVGIA 167 LYF KE LFK+VV+ N++P L + EA I+ G+S LL ++++ WW+ S G+ Sbjct: 66 LYFANKEELFKAVVQENLVPALAEGEALIDSFDGTSEALLHEILIGWWELIGESPASGLT 125 Query: 168 KLMVAESGNFPELARFYHDEVTARGDATIVRVLERGMARGEFRRINADAMKKVIVAPLIM 227 KL++AESGNFP+LA++YH+EV R D R+LERGMARGEFR +N D +VAP+I Sbjct: 126 KLLMAESGNFPDLAQYYHEEVIDRCDRLFARILERGMARGEFRDVNIDLTTLTMVAPMIF 185 Query: 228 LMLWEQSLAPCAATPIDPLAYLESMIDLCLNGL 260 LM+W+ S PC+ ++P A++ ++ L L+G+ Sbjct: 186 LMMWKHSFGPCSHRELEPKAFIAHVVSLLLHGV 218