BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.0581.p         (78 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003525530.1| hypothetical protein Slit_2918 [Sideroxydans...    82   2e-14
ref|NP_456768.1| hypothetical protein STY2446 [Salmonella enteri...    65   3e-09
ref|YP_002244295.1| hypothetical protein SEN2203 [Salmonella ent...    65   4e-09
gb|AAW77484.1| conserved hypothetical protein [Xanthomonas oryza...    60   8e-08
ref|YP_002141445.1| hypothetical protein SSPA0602 [Salmonella en...    58   4e-07

>ref|YP_003525530.1| hypothetical protein Slit_2918 [Sideroxydans lithotrophicus ES-1]
 gb|ADE13143.1| hypothetical protein Slit_2918 [Sideroxydans lithotrophicus ES-1]
          Length = 96

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 47/72 (65%), Positives = 51/72 (70%)

Query: 2  ACVRLSPHISRDGCKPAQKAGRCGCPKIWQRMSWPNCTQGTLAGLPWGMPGIGLVMEGAM 61
          AC R +PHIS +GC PAQKAGR G P   QR S  +CT GT AGLP GMPG G VMEGAM
Sbjct: 13 ACSREAPHISAEGCNPAQKAGRSGEPNTLQRRSSSSCTHGTPAGLPCGMPGRGEVMEGAM 72

Query: 62 QQAPHASRQFMD 73
          QQA    RQFM+
Sbjct: 73 QQAAQEGRQFME 84


>ref|NP_456768.1| hypothetical protein STY2446 [Salmonella enterica subsp. enterica
          serovar Typhi str. CT18]
 ref|NP_804497.1| hypothetical protein t0645 [Salmonella enterica subsp. enterica
          serovar Typhi str. Ty2]
 ref|YP_149953.1| hypothetical protein SPA0641 [Salmonella enterica subsp. enterica
          serovar Paratyphi A str. ATCC 9150]
 pir||AB0784 conserved hypothetical protein STY2446 [imported] - Salmonella
          enterica subsp. enterica serovar Typhi (strain CT18)
 emb|CAD02592.1| conserved hypothetical protein [Salmonella enterica subsp.
          enterica serovar Typhi]
 gb|AAO68346.1| conserved hypothetical protein [Salmonella enterica subsp.
          enterica serovar Typhi str. Ty2]
 gb|AAV76641.1| conserved hypothetical protein [Salmonella enterica subsp.
          enterica serovar Paratyphi A str. ATCC 9150]
          Length = 134

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 37/75 (49%), Positives = 46/75 (61%)

Query: 1  MACVRLSPHISRDGCKPAQKAGRCGCPKIWQRMSWPNCTQGTLAGLPWGMPGIGLVMEGA 60
          MA  R+  H+S  GCKP    GR G PKI  ++S  +CT     GLP+G+PGIG  +EGA
Sbjct: 1  MASSRVVKHMSPVGCKPEHTFGRKGEPKIRHKLSSESCTHLVFIGLPFGIPGIGDEIEGA 60

Query: 61 MQQAPHASRQFMDFP 75
          +QQAP   RQ M  P
Sbjct: 61 IQQAPQPLRQSMLSP 75


>ref|YP_002244295.1| hypothetical protein SEN2203 [Salmonella enterica subsp. enterica
          serovar Enteritidis str. P125109]
 emb|CAR33788.1| conserved hypothetical protein [Salmonella enterica subsp.
          enterica serovar Enteritidis str. P125109]
          Length = 134

 Score = 65.1 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 37/75 (49%), Positives = 46/75 (61%)

Query: 1  MACVRLSPHISRDGCKPAQKAGRCGCPKIWQRMSWPNCTQGTLAGLPWGMPGIGLVMEGA 60
          MA  R+  H+S  GCKP    GR G PKI  ++S  +CT     GLP+G+PGIG  +EGA
Sbjct: 1  MASSRVVKHMSPVGCKPEHTFGRKGEPKIRHKLSSESCTHLVFIGLPFGIPGIGDEIEGA 60

Query: 61 MQQAPHASRQFMDFP 75
          +QQAP   RQ M  P
Sbjct: 61 IQQAPQPLRQSMLSP 75


>gb|AAW77484.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae
          KACC10331]
          Length = 81

 Score = 60.5 bits (145), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 37/69 (53%), Positives = 42/69 (60%)

Query: 2  ACVRLSPHISRDGCKPAQKAGRCGCPKIWQRMSWPNCTQGTLAGLPWGMPGIGLVMEGAM 61
          AC+R  PHIS DG +    AGR G P   Q     +CT  T AGLP GMPGIG ++EGAM
Sbjct: 4  ACLRDVPHISSDGRRLPHTAGRSGEPNNRQPSCASSCTHATPAGLPLGMPGIGELIEGAM 63

Query: 62 QQAPHASRQ 70
          QQA    RQ
Sbjct: 64 QQAAQPRRQ 72


>ref|YP_002141445.1| hypothetical protein SSPA0602 [Salmonella enterica subsp.
          enterica serovar Paratyphi A str. AKU_12601]
 emb|CAR58731.1| conserved hypothetical protein [Salmonella enterica subsp.
          enterica serovar Paratyphi A str. AKU_12601]
          Length = 125

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 32/62 (51%), Positives = 39/62 (62%)

Query: 14 GCKPAQKAGRCGCPKIWQRMSWPNCTQGTLAGLPWGMPGIGLVMEGAMQQAPHASRQFMD 73
          GCKP    GR G PKI  ++S  +CT     GLP+G+PGIG  +EGA+QQAP   RQ M 
Sbjct: 5  GCKPEHTFGRKGEPKIRHKLSSESCTHLVFIGLPFGIPGIGDEIEGAIQQAPQPLRQSML 64

Query: 74 FP 75
           P
Sbjct: 65 SP 66