BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0568.p (345 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_635008.1| hypothetical protein MXAN_6894 [Myxococcus xant... 175 1e-41 ref|YP_004665387.1| hypothetical protein LILAB_12000 [Myxococcus... 172 8e-41 ref|YP_003949976.1| hypothetical protein STAUR_0340 [Stigmatella... 152 9e-35 ref|ZP_01462136.1| hypothetical protein STIAU_2660 [Stigmatella ... 128 1e-27 >ref|YP_635008.1| hypothetical protein MXAN_6894 [Myxococcus xanthus DK 1622] gb|ABF89857.1| hypothetical protein MXAN_6894 [Myxococcus xanthus DK 1622] Length = 363 Score = 175 bits (443), Expect = 1e-41, Method: Composition-based stats. Identities = 108/339 (31%), Positives = 174/339 (51%), Gaps = 6/339 (1%) Query: 4 LTKSVREFLLGSVSDFTDACGIPHLVTNSNLTSLIVALANYQEEGTKLLPEVYLCADLRS 63 L S R L +VS F D + +T + LIV L+ Y+EEG L P ++ DL Sbjct: 21 LVLSFRHLLTDAVSTFLDEASMSCELTADAIGELIVTLSRYREEGAPLFPMAFVGDDLGQ 80 Query: 64 MLQIIPNFDYLHIGVETQSAKALTKALKKCAPLAR-HGWHIYIESAPDSFSYGLFRGSMN 122 ML+ + D + IG+ +S + +ALK+CAPL + W +Y+ P+ F+YG+FR Sbjct: 81 MLEHLGGHDPIAIGIGPRSRATIQRALKQCAPLGQGRWWALYLLRVPEGFAYGVFRTDPF 140 Query: 123 PISISANQTLFSGSESPNTSYVNLCQVATGCIEIKSSNGSSRTIILNDKPDTLQSPDIDL 182 P++ + + L E V + Q+A +E++S G R + L+ SP + Sbjct: 141 PLAETPLERL-RRVEDRGAGVVGVLQLADNILELRSGGGLCRHVYLSGARVESASPPEVM 199 Query: 183 KHIVDAICSKVTEKNKDTSRNFIKKTLQLALNESHGAIIAV-SNSKNVPKFLTDGIALQA 241 + D + + VT +++ +R F ++ L + SHGA++AV + DGI L Sbjct: 200 DELADVVTAGVTTHSRERARGFFRRVLFEVMQGSHGALVAVLPRERAGSTLFVDGIILPR 259 Query: 242 PIDFPDLISQYQLDKQFQIEHHHKLVANAALVRGMICSDGITVFDKKGRVLAYNCFVSAA 301 P+D L+ +Y +D + A A L+RGM+ +DGITV G ++ YN FV Sbjct: 260 PLDIVALLERYHVDP--TDSAGTAVRAAAQLLRGMMATDGITVLRADGCIVGYNIFVRHP 317 Query: 302 KRTAAF-SESGGARTRAYQTLCEKINKGLSAAYVQSQDG 339 + A+ S GGAR R ++ LC + L+AA+++SQDG Sbjct: 318 ETLASQPSVVGGARRRTFEVLCAALGTELTAAFIRSQDG 356 >ref|YP_004665387.1| hypothetical protein LILAB_12000 [Myxococcus fulvus HW-1] gb|AEI64309.1| hypothetical protein LILAB_12000 [Myxococcus fulvus HW-1] Length = 356 Score = 172 bits (436), Expect = 8e-41, Method: Composition-based stats. Identities = 108/339 (31%), Positives = 171/339 (50%), Gaps = 6/339 (1%) Query: 4 LTKSVREFLLGSVSDFTDACGIPHLVTNSNLTSLIVALANYQEEGTKLLPEVYLCADLRS 63 L S R L +V F D + T + LIV L+ Y+EEG L P ++ DL Sbjct: 14 LVLSFRHLLTEAVGTFLDEARMSCEQTADAIGELIVTLSRYREEGAPLFPMAFVGDDLGR 73 Query: 64 MLQIIPNFDYLHIGVETQSAKALTKALKKCAPLAR-HGWHIYIESAPDSFSYGLFRGSMN 122 ML+ + D + IG+ +S + +ALK+CAPL + W +Y+ P+ F+YG+FR Sbjct: 74 MLEHLGGHDPIAIGIGPRSRATIQRALKQCAPLGQGRWWALYLLRVPEGFAYGVFRTDPF 133 Query: 123 PISISANQTLFSGSESPNTSYVNLCQVATGCIEIKSSNGSSRTIILNDKPDTLQSPDIDL 182 P++ S + L E + + Q+A +E++S G R + L+ SP + Sbjct: 134 PLAESPLERL-RRVEDKGVGVIGVLQLADNILELRSGGGLCRHVYLSGARVESASPPEVM 192 Query: 183 KHIVDAICSKVTEKNKDTSRNFIKKTLQLALNESHGAIIAV-SNSKNVPKFLTDGIALQA 241 + DA+ V+ +++ +R F ++ L + SHGA++AV + DGI L Sbjct: 193 DELADAVTDGVSTNSRERARGFFRRVLFEVMQGSHGALVAVLPRERAGSTLFVDGIILPR 252 Query: 242 PIDFPDLISQYQLDKQFQIEHHHKLVANAALVRGMICSDGITVFDKKGRVLAYNCFVSAA 301 P+D L+ +Y +D + A A L+RGM+ +DGITV G ++ YN FV Sbjct: 253 PLDIVALLERYHVDP--TDSAGTAVRAAAQLLRGMMATDGITVLRADGCIVGYNIFVRHP 310 Query: 302 KRTAAF-SESGGARTRAYQTLCEKINKGLSAAYVQSQDG 339 + A+ S GGAR R Y LC + L+AA+++SQDG Sbjct: 311 ETLASQPSVVGGARRRTYDVLCAALGTELTAAFIRSQDG 349 >ref|YP_003949976.1| hypothetical protein STAUR_0340 [Stigmatella aurantiaca DW4/3-1] gb|ADO68149.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1] Length = 353 Score = 152 bits (384), Expect = 9e-35, Method: Composition-based stats. Identities = 103/336 (30%), Positives = 164/336 (48%), Gaps = 7/336 (2%) Query: 7 SVREFLLGSVSDFTDACGIPHLVTNSNLTSLIVALANYQEEGTKLLPEVYLCADLRSMLQ 66 S R L +V F G+ L+ LI+ L+ Y+EEG L P V+L DL +ML Sbjct: 15 SFRHLLTEAVQGFLKEEGLGDSGLADALSELIITLSRYREEGEPLFPMVFLGDDLEAMLS 74 Query: 67 IIPNFDYLHIGVETQSAKALTKALKKCAPLAR-HGWHIYIESAPDSFSYGLFRGSMNPIS 125 ++ + L IG ++ + + +ALK+CAPL + W +Y+ P+ +YG+FR P+ Sbjct: 75 MLGGQEPLAIGTGLRTRETIERALKQCAPLGQGRWWALYLLLVPEGLAYGIFRSDPFPLL 134 Query: 126 ISANQTLFSGSESPNTSYVNLCQVATGCIEIKSSNGSSRTIILNDKPDTLQSPDIDLKHI 185 + + + S + + V L Q+A IE++ + G R I L+ P L + Sbjct: 135 ETPFERM-SRARDRSLHVVGLLQLAESVIELRGTGGLHRHIYLSGARVGAVLPTAVLDSL 193 Query: 186 VDAICSKVTEKNKDTSRNFIKKTLQLALNESHGAIIAV-SNSKNVPKFLTDGIALQAPID 244 A V + + +F ++ L + SHGA++AV ++ DGI L P+D Sbjct: 194 AQAATMDVAGPLRTLAGDFYRRVLFEVMQASHGALVAVLPQARGRSPLFVDGILLPEPLD 253 Query: 245 FPDLISQYQLDKQFQIEHHHKLVANAALVRGMICSDGITVFDKKGRVLAYNCFVSAAKRT 304 I++YQ + + + A L+RGM+ +DGITV G +L YN F+ + Sbjct: 254 IVAPIARYQEGAE---GADSAVRSMAQLLRGMMATDGITVLRSDGCILGYNVFIRHPETL 310 Query: 305 AAFS-ESGGARTRAYQTLCEKINKGLSAAYVQSQDG 339 A S GGAR R + LC + L AA+ +SQDG Sbjct: 311 ARTSLLVGGARRRTFDVLCASVGTELVAAFFRSQDG 346 >ref|ZP_01462136.1| hypothetical protein STIAU_2660 [Stigmatella aurantiaca DW4/3-1] gb|EAU67132.1| hypothetical protein STIAU_2660 [Stigmatella aurantiaca DW4/3-1] Length = 292 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 87/288 (30%), Positives = 142/288 (49%), Gaps = 7/288 (2%) Query: 55 VYLCADLRSMLQIIPNFDYLHIGVETQSAKALTKALKKCAPLAR-HGWHIYIESAPDSFS 113 V+L DL +ML ++ + L IG ++ + + +ALK+CAPL + W +Y+ P+ + Sbjct: 2 VFLGDDLEAMLSMLGGQEPLAIGTGLRTRETIERALKQCAPLGQGRWWALYLLLVPEGLA 61 Query: 114 YGLFRGSMNPISISANQTLFSGSESPNTSYVNLCQVATGCIEIKSSNGSSRTIILNDKPD 173 YG+FR P+ + + + S + + V L Q+A IE++ + G R I L+ Sbjct: 62 YGIFRSDPFPLLETPFERM-SRARDRSLHVVGLLQLAESVIELRGTGGLHRHIYLSGARV 120 Query: 174 TLQSPDIDLKHIVDAICSKVTEKNKDTSRNFIKKTLQLALNESHGAIIAV-SNSKNVPKF 232 P L + A V + + +F ++ L + SHGA++AV ++ Sbjct: 121 GAVLPTAVLDSLAQAATMDVAGPLRTLAGDFYRRVLFEVMQASHGALVAVLPQARGRSPL 180 Query: 233 LTDGIALQAPIDFPDLISQYQLDKQFQIEHHHKLVANAALVRGMICSDGITVFDKKGRVL 292 DGI L P+D I++YQ + + + A L+RGM+ +DGITV G +L Sbjct: 181 FVDGILLPEPLDIVAPIARYQEGAE---GADSAVRSMAQLLRGMMATDGITVLRSDGCIL 237 Query: 293 AYNCFVSAAKRTAAFS-ESGGARTRAYQTLCEKINKGLSAAYVQSQDG 339 YN F+ + A S GGAR R + LC + L AA+ +SQDG Sbjct: 238 GYNVFIRHPETLARTSLLVGGARRRTFDVLCASVGTELVAAFFRSQDG 285