BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.0566.p         (135 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001115389.1| hypothetical protein Bcep1808_6230 [Burkhold...   109   2e-22
ref|YP_934150.1| hypothetical protein azo2646 [Azoarcus sp. BH72...   104   5e-21
ref|ZP_06069819.1| predicted protein [Acinetobacter lwoffii SH14...    74   8e-12

>ref|YP_001115389.1| hypothetical protein Bcep1808_6230 [Burkholderia vietnamiensis G4]
 gb|ABO59134.1| conserved hypothetical protein [Burkholderia vietnamiensis G4]
          Length = 137

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 58/137 (42%), Positives = 82/137 (59%), Gaps = 2/137 (1%)

Query: 1   MPQLLRNIDQIGRQKRRDVLVVEFHNYETGFRCDYR--KNQARKAILAALDASGIGYEEC 58
           MP ++ +ID I R+K RD L V F +   G R  YR   + AR A++A LDA+ I ++ C
Sbjct: 1   MPSMIEHIDAIARRKARDTLFVSFFDDPAGERSPYRWQAHPARAALVAWLDANCIAWKPC 60

Query: 59  AGYASETRQDSYRGQIYIDVPFNRADRKYLEVEALLENADGTMKFDTAWFVGYSLEHCMR 118
              A E    SY G IYID+PF+R D  Y  +EA LE+ DG+++F    F+   L++  +
Sbjct: 61  GEVAGERVMRSYGGSIYIDLPFDRDDATYRALEAFLEHPDGSLRFPHMRFLVIDLDYARK 120

Query: 119 NAHHDAPGFWERLMVDF 135
           NA HD PGFW+R   +F
Sbjct: 121 NAPHDEPGFWDRWADNF 137


>ref|YP_934150.1| hypothetical protein azo2646 [Azoarcus sp. BH72]
 emb|CAL95263.1| conserved hypothetical protein [Azoarcus sp. BH72]
          Length = 148

 Score =  104 bits (259), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 63/148 (42%), Positives = 79/148 (53%), Gaps = 13/148 (8%)

Query: 1   MPQLLRNIDQIGRQKRRDVLVVEFH---NYETG---------FRC-DYRKNQARKAILAA 47
           MPQL+  ID I R+K RDVL V F    N E           F+  D+     R+ I+A 
Sbjct: 1   MPQLIEYIDAIARKKGRDVLYVRFKPDTNIEEDDDEGDLFPLFKSFDWENFPPRQQIIAW 60

Query: 48  LDASGIGYEECAGYASETRQDSYRGQIYIDVPFNRADRKYLEVEALLENADGTMKFDTAW 107
           LDA GIG++ C    S     SY GQIYID+P+      Y E+  LLEN DG+M+   A 
Sbjct: 61  LDAKGIGWQPCGDMPSPNCMVSYLGQIYIDLPYAPDLPLYCELAELLENPDGSMRIPGAD 120

Query: 108 FVGYSLEHCMRNAHHDAPGFWERLMVDF 135
           F   +L   M+NA HD PG+WER   DF
Sbjct: 121 FYLVTLTEAMKNAEHDEPGYWERWAEDF 148


>ref|ZP_06069819.1| predicted protein [Acinetobacter lwoffii SH145]
 gb|EEY89436.1| predicted protein [Acinetobacter lwoffii SH145]
          Length = 134

 Score = 73.9 bits (180), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 40/113 (35%), Positives = 59/113 (52%), Gaps = 3/113 (2%)

Query: 1   MPQLLRNIDQIGRQKRRDVLVVEFHNYETGFRCDYRKNQARKAILAALDASGIGYEECAG 60
           + QLL++ID I R+K RDVL V F +Y      D   +  R+ ++  L+  GIGY +C G
Sbjct: 5   LSQLLKHIDAIAREKNRDVLFVHFDHY---VHPDRNADSVRQMLIGWLEQQGIGYMQCLG 61

Query: 61  YASETRQDSYRGQIYIDVPFNRADRKYLEVEALLENADGTMKFDTAWFVGYSL 113
                  + Y G +Y+DVPF+   + Y ++   LE+  G MK     F   SL
Sbjct: 62  VDQTVHSEIYLGGLYLDVPFDLHHKTYQKLSRYLEDEQGNMKIKGIQFFVLSL 114