BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0560.p (620 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_620333.1| Phage-plasmid primase P4-like [Burkholderia cen... 422 e-116 ref|ZP_02507222.1| phage/plasmid primase, P4 family protein [Bur... 422 e-116 gb|EGD03902.1| P4 family phage/plasmid primase [Burkholderia sp.... 393 e-107 ref|YP_003526591.1| phage/plasmid primase, P4 family [Nitrosococ... 364 3e-98 ref|YP_001038397.1| P4 family phage/plasmid primase [Clostridium... 345 1e-92 >ref|YP_620333.1| Phage-plasmid primase P4-like [Burkholderia cenocepacia AU 1054] ref|YP_834573.1| P4 family phage/plasmid primase [Burkholderia cenocepacia HI2424] gb|ABF75360.1| Phage-plasmid primase P4-like protein [Burkholderia cenocepacia AU 1054] gb|ABK07680.1| phage/plasmid primase, P4 family [Burkholderia cenocepacia HI2424] Length = 746 Score = 422 bits (1086), Expect = e-116, Method: Composition-based stats. Identities = 243/629 (38%), Positives = 358/629 (56%), Gaps = 18/629 (2%) Query: 1 MSVKSAAGILPGIDVRGEGGYIVASPSQIDGVPYQWVDSKARIAIAPEALIRLVTEKKSS 60 M ++ G GID+R +GGY A PS I+G PY+WVD IA AP L+ ++ ++ Sbjct: 118 MKIQCKVGFRDGIDIRADGGYCGAPPSTIEGNPYEWVDETVPIAPAPAWLLEEFAKQGTT 177 Query: 61 PTPIDA--GAVIQEGTRNDKLMRAAVKWLKLKMDEDDVLDLLRELNGSACNPPLPDEELV 118 + A++ G RN +M A L +D + + + L E N + CNPPL + E+ Sbjct: 178 RRKRKSRKTAIVPAGNRNQSVMLHAFSLLNGGLDYERLEEELLEYNAACCNPPLSESEVS 237 Query: 119 QIVHNVFARY-----GNQVELLCTDKGDAERMADLYHNKLHYVEEKEQWLS-WTGFLWRP 172 Q+ NV + NQ TD G+A RM+DL+ ++L YV + +QWL +W+ Sbjct: 238 QVAVNVIRSHQENSGSNQ---HTTDLGNARRMSDLFGDELRYVPQTKQWLKKRESGVWQR 294 Query: 173 VGKEFVMQCLKELSNVVRKEAKQEIDSARKKALLEHALKLEGANKLENVLKLFKSEPNIL 232 V + V+ ++L ++ +E + + + + EHA E L+ ++LF+SEP I Sbjct: 295 VDELHVLLLARQLLPLIYEELSR-LSPGNRVEMFEHAKYTESNTGLKYAVELFRSEPGIA 353 Query: 233 TSVSAIDSHGSLISVANGTFDLLTNSFRAPDPSLLMTVGTNIVFDPDAKAPRWEKFISEV 292 S +D ++ V NG DL T SF DP L +T + +DPDA P WE F+ E+ Sbjct: 354 VSAGDLDQGEWMLPVRNGLIDLRTGSFMPMDPKLHITYTAAVDYDPDATCPLWEAFLLEI 413 Query: 293 MNENEALVECLQRIVGYCLTNSVAEQCIFFFYGHGANGKSTLLNILLELLGDMGTQAQGE 352 MN N LVE ++R +GY LT +E +FF +G GANGKST LN+L L GD+G QA G+ Sbjct: 414 MNRNVELVEYVRRAIGYTLTTLTSEHALFFAFGSGANGKSTFLNVLRALFGDLGAQANGD 473 Query: 353 LLLEGS----RTSSGASPDIARLEGKRLIAVSEFNDGKHLNEAQVKSLTGGDVITARYLF 408 +LL+ + +S+ AS ++ARL GKRL+A+SE +G+H +E VK TGG+ ITAR L+ Sbjct: 474 MLLDKNGGAAMSSNAASSEVARLAGKRLVAMSEVEEGRHFSEKTVKWYTGGEDITARLLY 533 Query: 409 KNQFTFKMTGKLIVASNHKPIIKGTDHGIWRRIHLIPFEVKFEKERQDKKLEQRLREELP 468 N F FK KL +A N+KP IKG DHGIWRR+ LIPF V E++D LE++LR+ELP Sbjct: 534 GNAFEFKPRFKLWLAGNYKPTIKGNDHGIWRRMKLIPFTVTIPPEKRDPDLERKLRDELP 593 Query: 469 GILNWAIEGYRKWRESG--LAIPASVARKTAEYRKEMDMLGMWLDEKCIIDSSKTISFSD 526 GILNWA+ G ++WRE+G L P ++ + +EYR EMD++ WL E D I F D Sbjct: 594 GILNWALVGCKQWRENGNKLNEPKAITNEVSEYRGEMDVVESWLSEFTRNDPDGEIHFGD 653 Query: 527 AYQSFGPWVKEYFNIDLSKNRFGRLLTERGFEKRSRPQRHYEGFELLENLPLKEQKKMEE 586 Y+ F W + +N S RFG +L ++G++ S+P R Y+G L+ +L E K Sbjct: 654 TYKFFKAWSESQYNFSYSGKRFGMILADKGYKPASKPHRVYKGLRLIVDLQFNENTKAYV 713 Query: 587 KRTWRDSMERIIKTEWPEKESRVKKEDNE 615 + D+ K +W + +D+E Sbjct: 714 GHEFIDTEIEKRKLDWQKTVLAAMTDDSE 742 >ref|ZP_02507222.1| phage/plasmid primase, P4 family protein [Burkholderia pseudomallei BCC215] Length = 761 Score = 422 bits (1085), Expect = e-116, Method: Composition-based stats. Identities = 237/619 (38%), Positives = 355/619 (57%), Gaps = 17/619 (2%) Query: 1 MSVKSAAGILPGIDVRGEGGYIVASPSQIDGVPYQWVDSKARIAIAPEALIRLV-----T 55 + V S LP +DV+ EGGY +A PS I+ PY + + I+ AP L+ L+ T Sbjct: 124 LKVPSRINFLPRVDVKAEGGYCLAPPSIINDEPYFYDEPVLPISRAPAWLLELLCSTQGT 183 Query: 56 EKKSSPTPIDAGAVIQEGTRNDKLMRAAVKWLKLKMDEDDVLDLLRELNGSACNPPLPDE 115 + + + A I G RN+ + L ++ D + + L E N + C+PPL + Sbjct: 184 KPRKRKSAKSKSATI--GNRNESVAFEGFSLLNAGLNPDLLEEELLEYNATNCDPPLSES 241 Query: 116 ELVQIVHNVFARY--GNQVELLCTDKGDAERMADLYHNKLHYVEEKEQWLSWT-GFLWRP 172 E+ QI NV + + N TD G+A+RM++LY + L YV E ++WL + WR Sbjct: 242 EVSQIAANVASSHQKNNDSVSRATDLGNAKRMSELYSDTLRYVSEMKRWLEKSPSGAWRF 301 Query: 173 VGKEFVMQCLKELSNVVRKEAKQEIDSARKKALLEHALKLEGANKLENVLKLFKSEPNIL 232 + + V+ +E+ ++ E ++ ++ ++ L++HA E L++ ++LF+SEP I Sbjct: 302 IDELRVLLLAREIIPMIHDEIRR-LNPGNRRELMDHAKYSESNKALKDAVELFRSEPGIA 360 Query: 233 TSVSAIDSHGSLISVANGTFDLLTNSFRAPDPSLLMTVGTNIVFDPDAKAPRWEKFISEV 292 S S +D + NG DL T F DP+L +T + FDPDA PRWE F+ E+ Sbjct: 361 VSASNLDEGEWMFPAKNGLVDLQTGKFMPMDPALHITQTAGVNFDPDATCPRWEAFLLEI 420 Query: 293 MNENEALVECLQRIVGYCLTNSVAEQCIFFFYGHGANGKSTLLNILLELLGDMGTQAQGE 352 MN N LVE L+R +GY LT +E +FF +G GANGKST LN+L L GD+G QA G+ Sbjct: 421 MNGNVELVEYLRRAIGYTLTCQTSEHALFFAFGSGANGKSTFLNLLRALFGDLGAQANGD 480 Query: 353 LLLEG----SRTSSGASPDIARLEGKRLIAVSEFNDGKHLNEAQVKSLTGGDVITARYLF 408 +LL+ + +S+ +S ++ARL GKRL+A+SE +G+H +E VK TGG+ I AR L+ Sbjct: 481 MLLDKNGGQAMSSNASSSEVARLVGKRLVAMSEVEEGRHFSEKTVKWYTGGEDIVARMLY 540 Query: 409 KNQFTFKMTGKLIVASNHKPIIKGTDHGIWRRIHLIPFEVKFEKERQDKKLEQRLREELP 468 +N F+F KL +A N+KP IKG DHGIWRR+ LIPF V E++D LE++LR+ELP Sbjct: 541 QNAFSFTPRFKLWLAGNYKPTIKGNDHGIWRRMKLIPFTVTIPPEKRDPDLERKLRDELP 600 Query: 469 GILNWAIEGYRKWRESG--LAIPASVARKTAEYRKEMDMLGMWLDEKCIIDSSKTISFSD 526 GILNWA+ G ++WR++G L PA + + +EYR EMD++ WL E D I F D Sbjct: 601 GILNWALVGCQQWRDNGYKLKEPAIITNEVSEYRGEMDVVESWLSEFTRDDPDGEIHFGD 660 Query: 527 AYQSFGPWVKEYFNIDLSKNRFGRLLTERGFEKRSRPQRHYEGFELLENLPLKEQKKMEE 586 AY+ F W + +N S+ R G +L ++G++ +RP R Y+G LL +L E Sbjct: 661 AYKFFKAWSEAEYNFSYSRKRLGMILQDKGYKPVARPHRVYQGLTLLVDLQFNENTGAYV 720 Query: 587 KRTWRDSMERIIKTEWPEK 605 + D + K +W K Sbjct: 721 GHEFYDYELELRKRDWQSK 739 >gb|EGD03902.1| P4 family phage/plasmid primase [Burkholderia sp. TJI49] Length = 548 Score = 393 bits (1010), Expect = e-107, Method: Composition-based stats. Identities = 211/510 (41%), Positives = 301/510 (59%), Gaps = 10/510 (1%) Query: 80 MRAAVKWLKLKMDEDDVLDLLRELNGSACNPPLPDEELVQIVHNVFARYGNQVE--LLCT 137 M A L ++ D + + L E N C PPLP+ E+ ++ NV + V + T Sbjct: 1 MLYAFSLLNGGLNPDRLEEELFEYNADCCKPPLPESEVARVAINVIKSHQENVGHIMHTT 60 Query: 138 DKGDAERMADLYHNKLHYVEEKEQWLS-WTGFLWRPVGKEFVMQCLKELSNVVRKEAKQE 196 D G+AERM++LY L YV E +QWL +W+ V + V+ ++L ++ +E Sbjct: 61 DLGNAERMSELYRETLRYVCETKQWLEKQDSGVWQRVDELHVLSLARKLIALIYEEMFL- 119 Query: 197 IDSARKKALLEHALKLEGANKLENVLKLFKSEPNILTSVSAIDSHGSLISVANGTFDLLT 256 + ++++ HA E L+N + LF+SEP I S +D L+ V NG DL + Sbjct: 120 LSPGNRQSMAMHAQYTESNTGLKNAVDLFRSEPGIALSAKDLDCGDWLLPVRNGLIDLQS 179 Query: 257 NSFRAPDPSLLMTVGTNIVFDPDAKAPRWEKFISEVMNENEALVECLQRIVGYCLTNSVA 316 +F P L +T + +DP+A P WE F+ ++MN + ALVE L+R +GY LT + Sbjct: 180 GTFTPMRPDLHITYTAAVDYDPNATCPIWEGFLLQIMNGDVALVEYLRRAIGYTLTTMTS 239 Query: 317 EQCIFFFYGHGANGKSTLLNILLELLGDMGTQAQGELLLE----GSRTSSGASPDIARLE 372 E +FF YG GANGKST LN+L L GD+G QA G++LLE G + + AS ++ARL Sbjct: 240 EHALFFAYGSGANGKSTFLNVLRALFGDLGAQANGDMLLEKNGAGGMSQNAASSEVARLM 299 Query: 373 GKRLIAVSEFNDGKHLNEAQVKSLTGGDVITARYLFKNQFTFKMTGKLIVASNHKPIIKG 432 GKRL+A+SE DG+H +E VK TGG+VITAR L++N F FK KL +A N+KP +KG Sbjct: 300 GKRLVAMSEVEDGRHFSEKTVKWYTGGEVITARMLYQNAFEFKPRFKLWLAGNYKPTVKG 359 Query: 433 TDHGIWRRIHLIPFEVKFEKERQDKKLEQRLREELPGILNWAIEGYRKWRESGLAI--PA 490 +DHGIWRR+ LIPF V E +D LE++L EELPGILNWA+ G R+WRE+G + P Sbjct: 360 SDHGIWRRMKLIPFTVTIPPEERDPDLERKLCEELPGILNWALAGCRQWRENGYKLNEPN 419 Query: 491 SVARKTAEYRKEMDMLGMWLDEKCIIDSSKTISFSDAYQSFGPWVKEYFNIDLSKNRFGR 550 +A + AEYR EMD++ WL E D I F D Y+ F W + +N S N+ GR Sbjct: 420 VIASEVAEYRSEMDVVHSWLSEFTRDDPEGEIHFGDTYKFFKSWSESQYNFSYSGNKLGR 479 Query: 551 LLTERGFEKRSRPQRHYEGFELLENLPLKE 580 +L ++G+ S+P R Y+G L+ +L E Sbjct: 480 ILKDKGYAAASKPHRVYKGLRLIVDLEFNE 509 >ref|YP_003526591.1| phage/plasmid primase, P4 family [Nitrosococcus halophilus Nc4] gb|ADE14204.1| phage/plasmid primase, P4 family [Nitrosococcus halophilus Nc4] Length = 715 Score = 364 bits (934), Expect = 3e-98, Method: Composition-based stats. Identities = 204/564 (36%), Positives = 301/564 (53%), Gaps = 13/564 (2%) Query: 7 AGILPGIDVRGEGGYIVASPSQIDGVPYQWVDSKARIAIAPEALIRLVTEKKSSPTPIDA 66 A PG+D+RG+GGY++ +PS ++G Y W++ A AP+ L+ L+ E P A Sbjct: 121 ANFRPGLDIRGDGGYVLVAPSVVEGKAYNWLNEGTPPAEAPDWLLELLHEGPKPTVPGGA 180 Query: 67 GAVIQ---EGTRNDKLMRAAVKWLKLKMDEDDVLDLLRELNGSACNPPLPDEELVQIVHN 123 ++ EG RND + R A L + ++ L+ + G CNPPLP++E ++ + + Sbjct: 181 AQALKGVAEGQRNDSVFRYAASLLHRGLRYEEAQTLIGKAAGK-CNPPLPEDEALRCLDS 239 Query: 124 VFARYGNQVELLCTDKGDAERMADLYHNKLHYVEEKEQWLSWTGFLWRPVGKEFVMQCLK 183 + RY + T+ G+AER+ D + + Y+ WL W G W+ K + Q + Sbjct: 240 AYGRYSPTPQRPLTELGNAERLVDRFGEVVRYLPAYHHWLLWNGTHWQISEKGEIEQLVH 299 Query: 184 ELSNVVRKEAKQEIDSARKKALLEHALKLEGANKLENVLKLFKSEPNILTSVSAIDSHGS 243 + ++ EA E D+ RK+ L++H E + N+L L + I + +D+ Sbjct: 300 AVVRGIKVEADAETDTTRKENLIKHGRNSERKTAISNMLSLAATLEGIALAPHQLDADPY 359 Query: 244 LISVANGTFDLLTNSFRAPDPSLLMTVGTNIVFDPDAKAPRWEKFISEVMNENEALVECL 303 V NG DL T R P+ +T ++ F P A+ PRWE F+ EVM ++ LV L Sbjct: 360 AFGVENGVVDLRTGQLRPPNTVDYLTKFGHVGFQPGAQCPRWEHFVLEVMGGDKDLVSFL 419 Query: 304 QRIVGYCLTNSVAEQCIFFFYGHGANGKSTLLNILLELLGDMGTQAQGELLLEGSRTSSG 363 QR VG L ++Q IF +G GANGKSTLL I+ L+G +A G L +R + Sbjct: 420 QRAVGATLVGGNSDQVIFILHGGGANGKSTLLRIIQTLMGSYA-RAAGNALFTVNRFQNQ 478 Query: 364 ASP--DIARLEGKRLIAVSEFNDGKHLNEAQVKSLTGGDVITARYLF-KNQFTFKMTGKL 420 P DI RL+ R++ SE +G+ LNE VK +TG D +T R + K F+ Sbjct: 479 GGPREDIVRLKDARMVLTSELGEGEILNEDLVKRMTGDDTLTGRVPYGKASIEFRPQFTP 538 Query: 421 IVASNHKPIIKGTDHGIWRRIHLIPFEVKFEKERQDKKLEQRLREELPGILNWAIEGYRK 480 +A+NHKPII+G DH IWRR+ LIPFE F ++QDK L L +ELPGILNWAI+G Sbjct: 539 WMATNHKPIIRGDDHAIWRRVKLIPFEQTFAGKKQDKGLSHALLQELPGILNWAIQGCLA 598 Query: 481 WRESGLAIPASVARKTAEYRKEMDMLGMWLDEKCIIDSSKTISFSDAYQSFGPWVKEYFN 540 W++ GL P V T EYR EMD+LG WL+E+C+ + +D YQ + W + + Sbjct: 599 WQKGGLTPPQVVEEATREYRSEMDLLGEWLEERCVQGAEHKAKNADLYQDYLDWSEAQYG 658 Query: 541 ID-----LSKNRFGRLLTERGFEK 559 I L FGR L +GF + Sbjct: 659 IRGKKHCLDPRVFGRKLAAKGFTR 682 >ref|YP_001038397.1| P4 family phage/plasmid primase [Clostridium thermocellum ATCC 27405] gb|ABN53204.1| phage/plasmid primase, P4 family [Clostridium thermocellum ATCC 27405] Length = 717 Score = 345 bits (886), Expect = 1e-92, Method: Composition-based stats. Identities = 200/573 (34%), Positives = 311/573 (54%), Gaps = 17/573 (2%) Query: 2 SVKSAAGILPGIDVRGEGGYIVASPS-QIDGVPYQWVDSKARI----AIAPEALIRLVTE 56 S+ + +PG+D R GG IVA+PS + G Y+W+ + A APE L++L+ Sbjct: 129 SIPNKTKFVPGLDTRSTGGLIVAAPSIHVSGNRYEWIKDHSPFDRTPAEAPEWLLKLMER 188 Query: 57 KKSSPTPIDAGAV---IQEGTRNDKLMRAAVKWLKLKMDEDDVLDLLRELNGSACNPPLP 113 ++ TP + ++ I EG+RN L A M E+ + L N + CNPPL Sbjct: 189 EEVLLTPFEGSSITAEIMEGSRNSTLTSLAGTMRARGMTEEGIYAALLAENNARCNPPLD 248 Query: 114 DEELVQIVHNVFARYGNQVELLC----TDKGDAERMADLYHNKLHYVEEKEQWLSWTGFL 169 + E+ IVH+V +RY + TD G+AER+ D + + + Y + WL + G Sbjct: 249 EAEVRNIVHSV-SRYQPNPPMKKHYHRTDSGNAERLRDRFGSIIRYCPAFKYWLVYDGCC 307 Query: 170 WRPVGKEFVMQCLKELSNVVRKEAKQEIDSARKKALLEHALKLEGANKLENVLKLFKSEP 229 WR E + +K +++ EA Q D A +K L+ HA++ E A +L+ ++ + + Sbjct: 308 WRKETGELMQFAIKTARDML-AEASQIEDEATRKELVHHAMQSENAGRLKAMIDVASNLE 366 Query: 230 NILTSVSAIDSHGSLISVANGTFDLLTNSFRAPDPSLLMTVGTNIVFDPDAKAPRWEKFI 289 ++ +DS ++ NG DL T M+ + + P++KAPRW +F+ Sbjct: 367 GLIIMPDELDSDIWKLNCKNGVVDLKTGELLPHKREYYMSKICPVEYSPESKAPRWIEFL 426 Query: 290 SEVMNENEALVECLQRIVGYCLTNSVAEQCIFFFYGHGANGKSTLLNILLELLGDMGTQA 349 + + + LV LQ+ VG L+ ++EQ +F YG GANGKST LN + +LLGD Sbjct: 427 NTITGGSNELVRYLQKAVGSSLSGDISEQALFVLYGTGANGKSTFLNTISDLLGDYARNT 486 Query: 350 QGELLLEGSRTSSGASPDIARLEGKRLIAVSEFNDGKHLNEAQVKSLTGGDVITARYLFK 409 E + ++ DIARL+G RL+ E N+G+ L+EA +KS TGGD ITAR+L+ Sbjct: 487 PSETFM--AKRIEAIGNDIARLQGARLVTAIEINEGQRLSEALIKSFTGGDRITARFLYG 544 Query: 410 NQFTFKMTGKLIVASNHKPIIKGTDHGIWRRIHLIPFEVKFEKERQDKKLEQRLREELPG 469 F F+ + NH+P+I+ T H IWRRI LIPF V ++++DK+L +LREELPG Sbjct: 545 EYFDFQPQFTPFLVVNHRPVIRDTSHSIWRRIKLIPFTVTIPEDKKDKQLPAKLREELPG 604 Query: 470 ILNWAIEGYRKWRESGLAIPASVARKTAEYRKEMDMLGMWLDEKCIIDSSKTISFSDAYQ 529 IL+WA+EG W++ GL +P V T YR+EMD +++E CI++ + +S Sbjct: 605 ILSWAVEGCLLWQKEGLEMPDEVKEATEGYREEMDTFSSFIEECCIVEEGRKVSNRSIRY 664 Query: 530 SFGPWVKEYFNIDLSKNRFGRLLTERGFE-KRS 561 ++ W +E + L + F +TERGF KRS Sbjct: 665 AYETWCRENGDYPLGQKLFNAKMTERGFAVKRS 697