BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0558.p (243 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001095787.1| hypothetical protein Shew_3662 [Shewanella l... 278 6e-73 ref|YP_003006475.1| hypothetical protein Dd1591_4203 [Dickeya ze... 210 2e-52 ref|YP_004011835.1| HNH nuclease [Rhodomicrobium vannielii ATCC ... 172 5e-41 ref|ZP_00989568.1| hypothetical protein V12B01_17706 [Vibrio spl... 158 8e-37 ref|YP_001763307.1| HNH nuclease [Burkholderia cenocepacia MC0-3... 132 4e-29 >ref|YP_001095787.1| hypothetical protein Shew_3662 [Shewanella loihica PV-4] gb|ABO25528.1| hypothetical protein Shew_3662 [Shewanella loihica PV-4] Length = 223 Score = 278 bits (710), Expect = 6e-73, Method: Composition-based stats. Identities = 125/224 (55%), Positives = 156/224 (69%), Gaps = 8/224 (3%) Query: 15 LHSAVQKGRRSKYCLQLWSRFIRLRDNNRCVLCHCLCLRVASIKTRLSAHHIVRKSFWSH 74 L A++K R + YCL LWS FIR RD +RC++C+ K +LSAHHI+RKSFW H Sbjct: 5 LVKAIEKQRSNSYCLSLWSMFIRERDGHRCIICNS--------KKKLSAHHIIRKSFWKH 56 Query: 75 LRYQTGNGITLCHACHKEPHQAFNGKPNLELPMDAEGGENIDLLTGLLGALVVDAKTRKI 134 L++QTGNGITLCH CHK+PH FNG+P+L PMDA+GGE IDL TG LGALV+D+ R Sbjct: 57 LKFQTGNGITLCHVCHKDPHTGFNGRPDLSQPMDAQGGEKIDLFTGYLGALVIDSYRRNQ 116 Query: 135 FRDEFYFFDARALRVFKKIQGISEQARFPGCSLEQAYLIWNQTPREMLQAMLRSFGVAIP 194 + Y F AL FKKIQGI E A F G +E+AY IWNQTPR M +A+L S GV IP Sbjct: 117 LEEYLYHFSDGALDAFKKIQGIPEAATFEGRQIEKAYQIWNQTPRGMFEAILNSVGVTIP 176 Query: 195 DDYVQTDEITFFESQTLRDSNGAAGSVLYMRYIPPTPFKSDSPD 238 +DYVQ +E+T + S TL+ +G+ V+Y RYIPPT FK + D Sbjct: 177 EDYVQNEEVTMYYSDTLKKKDGSPADVMYFRYIPPTEFKENPDD 220 >ref|YP_003006475.1| hypothetical protein Dd1591_4203 [Dickeya zeae Ech1591] gb|ACT08996.1| conserved hypothetical protein [Dickeya zeae Ech1591] Length = 195 Score = 210 bits (534), Expect = 2e-52, Method: Composition-based stats. Identities = 98/195 (50%), Positives = 130/195 (66%), Gaps = 8/195 (4%) Query: 11 ALNTLHSAVQKGRRSKYCLQLWSRFIRLRDNNRCVLCHCLCLRVASIKTRLSAHHIVRKS 70 AL L++AV KGR + YC +LWSRF+R RD RCV+CHC R+SAHHI+RKS Sbjct: 8 ALVRLNNAVSKGRSTAYCHRLWSRFVRTRDLQRCVVCHC--------SDRISAHHILRKS 59 Query: 71 FWSHLRYQTGNGITLCHACHKEPHQAFNGKPNLELPMDAEGGENIDLLTGLLGALVVDAK 130 F S R+++GNGITLC +CHK+ H FNG+P+L+ PMDAE GENI+ LLG L DA Sbjct: 60 FLSAARFESGNGITLCLSCHKKIHSTFNGRPDLQQPMDAECGENIEQTVELLGHLAADAF 119 Query: 131 TRKIFRDEFYFFDARALRVFKKIQGISEQARFPGCSLEQAYLIWNQTPREMLQAMLRSFG 190 R + D++YF + + + KK QGI E+ +FPG LEQ Y IW QTPR ML+A+L + G Sbjct: 120 ERGVLSDKYYFLSDKYIEICKKFQGIEEEVQFPGTRLEQVYWIWRQTPRGMLKALLSANG 179 Query: 191 VAIPDDYVQTDEITF 205 +P ++ Q I + Sbjct: 180 FELPSEFAQLGPIVW 194 >ref|YP_004011835.1| HNH nuclease [Rhodomicrobium vannielii ATCC 17100] gb|ADP70736.1| HNH nuclease [Rhodomicrobium vannielii ATCC 17100] Length = 238 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 98/231 (42%), Positives = 127/231 (54%), Gaps = 21/231 (9%) Query: 12 LNTLHSAVQKGRRSKYCLQLWSRFIRLRDNNRCVLCHCLCLRVASIKTRLSAHHIVRKSF 71 L L AV GR CL+ WS FIR RD RCV CH + LSAHHI RKSF Sbjct: 21 LTKLREAVVAGRSRLSCLRRWSEFIRERDGYRCVDCHS--------QEDLSAHHICRKSF 72 Query: 72 WSHLRYQTGNGITLCHACHKEPHQAFNGKPNLELPMDAEGGENIDLLTGLLGALVVDAKT 131 +S ++ TGNGITLC CHKE H FNG+PN+ LP+DAEGGE + L+ L L+ DA Sbjct: 73 FSAAQFDTGNGITLCRQCHKELHAGFNGRPNMLLPVDAEGGEKLGLMERLYSILLDDAVE 132 Query: 132 RKIFRDEFYFFDARALRVFKKIQGISEQARFPGCSLEQAYLIWNQTPREMLQAMLRSFGV 191 R + R++FYF L +K+QG FPG LEQAYLI + R++L+A+ + G Sbjct: 133 RGLMREDFYFLSDEILGFLRKMQGYEVDTYFPGSRLEQAYLILAVSERQVLRAIAEANGF 192 Query: 192 AIPDDYVQTDEITFFES---QTLRDSNG-AAGSVLYMRYIP--PTPFKSDS 236 + DE + L D G +G ++ +Y P P P KS+S Sbjct: 193 VL-------DERPLLPGGAMEVLNDEGGLGSGCIVCQKYSPRFPAPDKSES 236 >ref|ZP_00989568.1| hypothetical protein V12B01_17706 [Vibrio splendidus 12B01] gb|EAP95502.1| hypothetical protein V12B01_17706 [Vibrio splendidus 12B01] Length = 135 Score = 158 bits (399), Expect = 8e-37, Method: Composition-based stats. Identities = 69/132 (52%), Positives = 93/132 (70%) Query: 107 MDAEGGENIDLLTGLLGALVVDAKTRKIFRDEFYFFDARALRVFKKIQGISEQARFPGCS 166 MDA+GGE IDL TG LGALV+D++ R + + Y+F +AL FKKIQGI E A+F G Sbjct: 1 MDAQGGEKIDLFTGYLGALVIDSERRNLSGEHLYYFSDKALEAFKKIQGIPEAAKFEGRR 60 Query: 167 LEQAYLIWNQTPREMLQAMLRSFGVAIPDDYVQTDEITFFESQTLRDSNGAAGSVLYMRY 226 +EQA+ IWNQTPR M +A+L S GV +P+DY+Q + +T + S TL+ +G+ V+Y RY Sbjct: 61 IEQAHQIWNQTPRGMFEAILGSMGVKVPEDYIQNEAVTTYYSDTLKKEDGSPADVMYFRY 120 Query: 227 IPPTPFKSDSPD 238 IPPT FK + D Sbjct: 121 IPPTEFKENPDD 132 >ref|YP_001763307.1| HNH nuclease [Burkholderia cenocepacia MC0-3] gb|ACA89185.1| HNH nuclease [Burkholderia cenocepacia MC0-3] Length = 255 Score = 132 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 70/188 (37%), Positives = 105/188 (55%), Gaps = 16/188 (8%) Query: 15 LHSAVQKGRRSKYCLQLWSRFIRLRDNNRCVLCHCLCLRVASIKTRLSAHHIVRKSFWSH 74 L SA++KGR ++ L+LWSRFI+ RD+ RCV C+ K R+ +HHIVRK+ + Sbjct: 73 LISAIEKGRSDRWILRLWSRFIKARDSYRCVCCNS--------KERIQSHHIVRKTLYPW 124 Query: 75 LRYQTGNGITLCHACHKEPHQAFNGKPNLELPMDAEGGENIDLLTGLLGALVVDAKTRKI 134 ++ GNGITLC+ CH H+ FNG+P+L LP+ AE G++ D L G L+ DA+ R + Sbjct: 125 GAFELGNGITLCYECHGRVHEQFNGRPDLLLPLGAEQGDDQDEWAFLFGLLLDDARFRGV 184 Query: 135 FRDEFYFFDARALRVFKKIQGISEQARFPG----CSLEQAYLIWNQTPR----EMLQAML 186 +EFY+ L+ F K QG + + + A+ IW P + + ++ Sbjct: 185 DEEEFYYLGDHMLKFFVKCQGYDDLYKLVAQGELSRIRFAHEIWRSMPEAWYTDFISELI 244 Query: 187 RSFGVAIP 194 RS IP Sbjct: 245 RSHFFEIP 252