BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0557.p (306 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004547528.1| hypothetical protein Sinme_0142 [Sinorhizobi... 181 1e-43 ref|ZP_05135230.1| conserved hypothetical protein [Stenotrophomo... 137 2e-30 ref|ZP_02195653.1| hypothetical protein 1103602000597_AND4_09882... 135 8e-30 ref|YP_002954833.1| hypothetical protein DMR_34560 [Desulfovibri... 132 5e-29 ref|ZP_06684497.1| conserved hypothetical protein [Achromobacter... 131 1e-28 >ref|YP_004547528.1| hypothetical protein Sinme_0142 [Sinorhizobium meliloti AK83] gb|AEG51914.1| hypothetical protein Sinme_0142 [Sinorhizobium meliloti AK83] Length = 293 Score = 181 bits (459), Expect = 1e-43, Method: Composition-based stats. Identities = 106/297 (35%), Positives = 160/297 (53%), Gaps = 13/297 (4%) Query: 6 MQFFWVNIGETHNEVIEGSFLWAPKSSLNKNGTTIFRKHWDNVGEVRAGDVIFCCYKKQI 65 M ++WV+ +TH + +G +LWAPKS N + +HW N+ VR GDVIF K+ I Sbjct: 1 MAYWWVSQNQTHRQERDGGYLWAPKSGANG----VVFQHWSNMTRVRPGDVIFSYAKQSI 56 Query: 66 NFIATAIADAYDEKRPMSRSFKD-WDAKGYRVDVSLTYLEMALHRDEISLDFSIQFDERT 124 I A + AYD +P F+ W G+RVDV + A+ D +R Sbjct: 57 GAIGVAASAAYDAPQP--DEFEGAWHGDGWRVDVIYRAVFPAVPISTFVDDLIPHLPDRN 114 Query: 125 EPSVFTKERTLSQIYMARLPLDAGLFLLEKTQQLSNFQNALID-LGNTGPRSISKTTREA 183 P TK++ Q Y+ +P AG + ++ ++ + + D L P +TTREA Sbjct: 115 SP--ITKQKKGVQGYLFAVPPKAGQLICDQVAVVAPVEQIVADTLQQAVP---DETTREA 169 Query: 184 LIQSRIGQGQFRRDVIKHWHGRCALTGLKNIDLLIASHIDAWALCNNDARLDPNNGLLLA 243 L+++R+GQG++RRD+++HW G+CA+TGL+ LL ASHI W +N RLD NG +L Sbjct: 170 LVKARVGQGRWRRDLLRHWSGQCAVTGLEIEALLRASHIKPWRDADNRERLDVLNGFILG 229 Query: 244 AHIDKLFDRGLIAFTDAGDLCISKKLSDDDCKILGLEQYSKLTKITPDNRNYLLKHR 300 D FD GLI+F + G + IS +L + G+ +K+ + D+R YL HR Sbjct: 230 PAYDVAFDAGLISFENDGSIMISPRLPANQLLAAGVSDSAKVQALVDDHRFYLAHHR 286 >ref|ZP_05135230.1| conserved hypothetical protein [Stenotrophomonas sp. SKA14] gb|EED39291.1| conserved hypothetical protein [Stenotrophomonas sp. SKA14] Length = 304 Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats. Identities = 105/316 (33%), Positives = 155/316 (49%), Gaps = 33/316 (10%) Query: 6 MQFFWVNIGETHNEVIEGSFLWAPKSSLNKNGTTIFRKHWDNVGEVRAGDVIFCCYKKQI 65 M ++WVN +T +G FLW+PK + + + + +N+ R GDVIF KQI Sbjct: 1 MAYWWVNQKKTFEASAKGGFLWSPKKKTDGHRSAFY----ENMTLARPGDVIFAFADKQI 56 Query: 66 NFIATAIADAYDEKRPMSRSFK----DWDAKGYRVDVSLTYLEMAL----HRDEISLDFS 117 +A + RP SFK DW+ G+ V V +E+ L H D + Sbjct: 57 RALAIVSGAHAEMARP--ESFKTADSDWNNDGWMVPVQYQLVEVPLEVRNHMDLLGQHLP 114 Query: 118 IQFDERTEPSVFTKERTLSQIYMARLP--LDAGLFLLEKT--QQLSNFQ------NALID 167 ++ +PS E Y+ +P + L L KT ++L +Q +A+ Sbjct: 115 YKYAP-IKPSGKANE-----AYLCPVPEGMADDLLNLLKTDREELRQWQEDVPVSSAIRS 168 Query: 168 LGNTGPRSISKTTREALIQSRIGQGQFRRDVIKHWHGRCALTGLKNIDLLIASHIDAWAL 227 + N ++S T ++ LI +R+GQG+FR +V + C +TG N + LIASHI W+ Sbjct: 169 IQNDA--TLSTTQKKQLINARVGQGKFRSNV-RDIEPMCRVTGTTNPNFLIASHIKRWSE 225 Query: 228 CNNDARLDPNNGLLLAAHIDKLFDRGLIAFTDAGDLCISKKLSDDDCKILGLEQYSKLTK 287 +N RLD NNGL+LA HID+LFDR LI+FTD G + S+ L D LEQ Sbjct: 226 SDNRERLDGNNGLMLAPHIDRLFDRWLISFTDDGVMIFSEALPDGIRAEWALEQKIAPKP 285 Query: 288 ITPDNRNYLLKHRLRF 303 + YL +HR R Sbjct: 286 FNAEQMRYLSEHRERL 301 >ref|ZP_02195653.1| hypothetical protein 1103602000597_AND4_09882 [Vibrio sp. AND4] gb|EDP59474.1| hypothetical protein AND4_09882 [Vibrio sp. AND4] Length = 307 Score = 135 bits (340), Expect = 8e-30, Method: Composition-based stats. Identities = 102/313 (32%), Positives = 162/313 (51%), Gaps = 27/313 (8%) Query: 6 MQFFWVNIGETHNEVIEGSFLWAPKSSLNKNGTTIFRKHWDNVGEVRAGDVIFCCYKKQI 65 M ++WV+ +T + EG ++W+PK N+NGT +++N+ V+ GDV+F K I Sbjct: 1 MNYWWVSQKQTFKQEFEGGYMWSPKQ--NRNGTQ--SHYYNNMTLVKPGDVVFSFAKGLI 56 Query: 66 NFIATAIADAYDEKRP--MSRSFKDWDAKGYRVDVSLTYLEMALHRDEISLDFSIQFDER 123 I + AY +P + DW G++VD+ +E + R + +D SI+ Sbjct: 57 LSIGIVRSHAYSYTKPTEFGAAGDDWADDGWKVDLEYHLVENKI-RPKAHID-SIRPLLP 114 Query: 124 TEPSVFTKERTLSQIYMARLPLDAG-----LFLLEKTQQLSNF----QNA----LIDLGN 170 + S +Q Y+ +PLD L E + + F +NA +I+ Sbjct: 115 QKYSPLQDNGNGNQAYLFLVPLDLASKVVELIGSEAEEIIFGFADTTENATASDVIEHQI 174 Query: 171 TGPRSISKTTREALIQSRIGQGQFRRDVIKHWHGRCALTGLKNIDLLIASHIDAWALCNN 230 SI +T + +++SR GQG FR ++ C +TG+++ + LIASHI WA +N Sbjct: 175 FNDASIDETEKHQVVKSRRGQGIFRSR-LEQVESLCRVTGVQSKNHLIASHIKPWAASSN 233 Query: 231 DARLDPNNGLLLAAHIDKLFDRGLIAFTDAGDLCISKKLSDDDCKILGLEQ--YSKLTKI 288 RLD +NGLLLA H+D LFD+G I+F D G++ +SKKL+ D K + Q Y +K+ Sbjct: 234 QERLDGHNGLLLAPHVDHLFDKGYISFEDNGEMIVSKKLNLDVLKAWSITQGNYGHFSKL 293 Query: 289 TPDNRNYLLKHRL 301 + YL HRL Sbjct: 294 ---QQEYLSYHRL 303 >ref|YP_002954833.1| hypothetical protein DMR_34560 [Desulfovibrio magneticus RS-1] dbj|BAH76947.1| hypothetical protein [Desulfovibrio magneticus RS-1] Length = 317 Score = 132 bits (333), Expect = 5e-29, Method: Composition-based stats. Identities = 95/317 (29%), Positives = 153/317 (48%), Gaps = 27/317 (8%) Query: 6 MQFFWVNIGETHNEVIEGSFLWAPKSSLNKNGTTIFRKHWDNVGEVRAGDVIFCCYKKQI 65 M ++WVN +T I G +LW+PK K+G + ++ + +++ GD++F Y +I Sbjct: 1 MTYWWVNQNQTAEHEILGGYLWSPK--YKKDGRNNY--FYNTMRQIQVGDIVFSYYSTRI 56 Query: 66 NF--IATAIADAYDEKRPMSRSFKDWDAKGYRVDVSLTYLEMALHRDEISLDFSIQFDER 123 IATA+A + + + + W+ G+ V V T + E+ + R Sbjct: 57 QHLGIATAVAASCPKPDEFGSTGESWNIDGWIVPVKWTKIPNPFRPKELINELRPHLPGR 116 Query: 124 TEPSVFTKERTLSQIYMARLPLDAGLFLLEKTQQLSN--FQNALIDLGNTGP-------- 173 P L +Y+ +P L+ + L+ + A + + GP Sbjct: 117 YSPIQKDTGDGLQGVYLTLVPDSMADVLMRQIGDLAPQVKEAAAGQVEDDGPIQRVDDAI 176 Query: 174 -------RSISKTTREALIQSRIGQGQFRRDVIKHWHGRCALTGLKNIDLLIASHIDAWA 226 SI T +EAL+++R GQG+FR+++ G C +TG+ + LL ASHI W Sbjct: 177 EKIIRISTSIDSTEKEALVKARKGQGRFRKNLESIEPG-CRITGVTDSKLLKASHIKPWR 235 Query: 227 LC-NNDARLDPNNGLLLAAHIDKLFDRGLIAFTDAGDLCISKKLSDDDCKILGLE--QYS 283 C +N+ RLD NGLLL ID LFDRGLI F D GDL +S +++ D LG++ Q Sbjct: 236 SCASNEERLDGYNGLLLTPTIDHLFDRGLIGFNDNGDLLVSARIAADQLMRLGIDSGQLL 295 Query: 284 KLTKITPDNRNYLLKHR 300 + + + +YL HR Sbjct: 296 NVGRFSKKQADYLAYHR 312 >ref|ZP_06684497.1| conserved hypothetical protein [Achromobacter piechaudii ATCC 43553] gb|EFF78598.1| conserved hypothetical protein [Achromobacter piechaudii ATCC 43553] Length = 331 Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats. Identities = 82/273 (30%), Positives = 140/273 (51%), Gaps = 27/273 (9%) Query: 6 MQFFWVNIGETHNEVIEGSFLWAPKSSLNKNGTTIFRKHWDNVGEVRAGDVIFCCYKKQI 65 M F+WVN +++ + + G ++W P+ + + R W NV +VR GDVIF ++ + Sbjct: 28 MSFWWVNHSKSYKKELSGGYIWCPQV----HAGDVQRVPWLNVAKVRPGDVIFSYAEQHV 83 Query: 66 NFIATAIADAYDEKRPMSRSFKDWDAKGYRVDVSLTYLEMALHRDEISLDFSIQ-FDERT 124 + A A+ + W +G+ E+++ +++ FS++ + + Sbjct: 84 RAVGVARTHAFTTAAKPGYAEMGWGQEGW---------EVSIQWEQLPTGFSVKPYIDVV 134 Query: 125 EPSVFTKERTLSQ------IYMARLPLDAGLFLLEKT---QQLSNFQNALIDLGNTGPRS 175 P + K L Y++ + + G +LL + L + A ++L Sbjct: 135 RPFLAAKHAPLKNNGDAQLAYLSSISDEFGTWLLHNVGVNETLLVGRAAELELN---AMH 191 Query: 176 ISKTTREALIQSRIGQGQFRRDVIKHWHGRCALTGLKNIDLLIASHIDAWALCNNDARLD 235 I +T R L Q+R+GQG +RRDV+ +C LT + + + LIASHI W C+N+ RLD Sbjct: 192 IPETQRMCLHQARVGQGAYRRDVLL-IEPKCRLTAISDPNFLIASHIKPWKDCSNEERLD 250 Query: 236 PNNGLLLAAHIDKLFDRGLIAFTDAGDLCISKK 268 +NGL+LA H+D+LFDRG I+F +GDL + K Sbjct: 251 GHNGLMLAPHVDRLFDRGWISFDSSGDLLVQPK 283