BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0554.p (424 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_002979580.1| Integrase catalytic region [Ralstonia picket... 653 0.0 ref|YP_002981007.1| Integrase catalytic subunit [Ralstonia picke... 652 0.0 ref|YP_582638.1| transposase catalytic site ISRme4 [Cupriavidus ... 648 0.0 ref|ZP_02881458.1| Integrase catalytic region [Burkholderia gram... 639 0.0 ref|ZP_02882057.1| Integrase catalytic region [Burkholderia gram... 636 e-180 >ref|YP_002979580.1| Integrase catalytic region [Ralstonia pickettii 12D] gb|ACS65926.1| Integrase catalytic region [Ralstonia pickettii 12D] Length = 508 Score = 653 bits (1685), Expect = 0.0, Method: Composition-based stats. Identities = 308/424 (72%), Positives = 356/424 (83%) Query: 1 MHADLCVLGFEGSYDRVAAFARQWKVDQLDRVSSASKGTYIPLSFDAGEAFQFDWSEDWV 60 +H DLC LGF GSYDRVAAFAR+W+ +Q ++ ++ +GT+IPL F GEAFQFDWSEDW Sbjct: 85 IHTDLCALGFTGSYDRVAAFARRWRQEQQEQARTSGRGTFIPLRFAEGEAFQFDWSEDWA 144 Query: 61 VIAGERTKLQIAHFKLSHSRAFYLKAYPIQTHEMLFDAHEHAFRVFGGIPRRGIYDNMKT 120 VIAGERTKLQ+A FKLSHSRAF+L+AY +QTHEMLFDAH HAF +GGIPRRGIYDNMKT Sbjct: 145 VIAGERTKLQVAQFKLSHSRAFFLRAYLLQTHEMLFDAHHHAFVAWGGIPRRGIYDNMKT 204 Query: 121 AVDKVKTGKQRDVNARFSAMVSHYLFDAEFCNPASGWEKGQIEKNVRDSRHRIWHTVPDF 180 AVD+V+ GK RDVN RFS MVSHYLFDAEFCNPASGWEKGQIEKNV+DSRHRIW +P F Sbjct: 205 AVDRVRLGKLRDVNLRFSTMVSHYLFDAEFCNPASGWEKGQIEKNVQDSRHRIWQRIPAF 264 Query: 181 TSLEALNHWLEDECLEFWKKLQHPEDEMSIWDVWKLETQHLMPVGQPFDGFVEHTKRVSP 240 SL ALN WL D+C+ W++ +HPE +M++W+ W LE HLMPVGQPFDGFVEHTKRVSP Sbjct: 265 GSLAALNDWLADQCVRLWQQTRHPELDMTLWEAWSLERPHLMPVGQPFDGFVEHTKRVSP 324 Query: 241 TCLITHERNRYSVPASFANRPISLRVYARHLSIVAEGRTIAEHVRYFNKDKGPGRTIYNW 300 TCL+T ERNRYSVPASFANRPISLRVYA L VAEG+ IAEHVR+ ++ PGRTIY+W Sbjct: 325 TCLVTFERNRYSVPASFANRPISLRVYANRLVFVAEGQVIAEHVRHIDRSHLPGRTIYDW 384 Query: 301 RHYLAVLQRKPGALRNGTPFKELPEGFKQLQALLLKRPAGDREMVEILSLVLFHDEDIVI 360 HYLAVLQRKPGALRNG PF ELPEGF++LQ+ LLKRP GDREMVEIL+LVL HDE V+ Sbjct: 385 HHYLAVLQRKPGALRNGAPFAELPEGFRRLQSTLLKRPGGDREMVEILALVLLHDEQAVL 444 Query: 361 NAVELSLESGAPSKQSILNILSRLLDGKPAPRIDAPAALTLAVEPMADIGRYDRLRKRGD 420 AVEL+LE+GAPSKQ+ILNILSRLL+G+P I +P AL L VEP A++GRYD LR R Sbjct: 445 TAVELALEAGAPSKQTILNILSRLLEGEPVAPITSPQALALHVEPQANVGRYDSLRDREV 504 Query: 421 QNAA 424 +AA Sbjct: 505 HHAA 508 >ref|YP_002981007.1| Integrase catalytic subunit [Ralstonia pickettii 12D] gb|ACS62335.1| Integrase catalytic region [Ralstonia pickettii 12D] Length = 508 Score = 652 bits (1683), Expect = 0.0, Method: Composition-based stats. Identities = 307/424 (72%), Positives = 356/424 (83%) Query: 1 MHADLCVLGFEGSYDRVAAFARQWKVDQLDRVSSASKGTYIPLSFDAGEAFQFDWSEDWV 60 +H DLC LGF GSYDRVAAFAR+W+ +Q ++ ++ +GT+IPL F GEAFQFDWSEDW Sbjct: 85 IHTDLCALGFTGSYDRVAAFARRWRQEQQEQARTSGRGTFIPLRFAEGEAFQFDWSEDWA 144 Query: 61 VIAGERTKLQIAHFKLSHSRAFYLKAYPIQTHEMLFDAHEHAFRVFGGIPRRGIYDNMKT 120 +IAGERTKLQ+A FKLSHSRAF+L+AY +QTHEMLFDAH HAF +GGIPRRGIYDNMKT Sbjct: 145 IIAGERTKLQVAQFKLSHSRAFFLRAYLLQTHEMLFDAHHHAFVAWGGIPRRGIYDNMKT 204 Query: 121 AVDKVKTGKQRDVNARFSAMVSHYLFDAEFCNPASGWEKGQIEKNVRDSRHRIWHTVPDF 180 AVD+V+ GK RDVN RFS MVSHYLFDAEFCNPASGWEKGQIEKNV+DSRHRIW +P F Sbjct: 205 AVDRVRQGKLRDVNLRFSTMVSHYLFDAEFCNPASGWEKGQIEKNVQDSRHRIWQRIPAF 264 Query: 181 TSLEALNHWLEDECLEFWKKLQHPEDEMSIWDVWKLETQHLMPVGQPFDGFVEHTKRVSP 240 SL ALN WL D+C+ W++ +HPE +M++W+ W LE HLMPVGQPFDGFVEHTKRVSP Sbjct: 265 GSLAALNDWLADQCVRLWQQTRHPELDMTLWEAWSLERPHLMPVGQPFDGFVEHTKRVSP 324 Query: 241 TCLITHERNRYSVPASFANRPISLRVYARHLSIVAEGRTIAEHVRYFNKDKGPGRTIYNW 300 TCL+T ERNRYSVPASFANRPISLRVYA L VAEG+ IAEHVR+ ++ PGRTIY+W Sbjct: 325 TCLVTFERNRYSVPASFANRPISLRVYADRLVFVAEGQVIAEHVRHIDRSHLPGRTIYDW 384 Query: 301 RHYLAVLQRKPGALRNGTPFKELPEGFKQLQALLLKRPAGDREMVEILSLVLFHDEDIVI 360 HYLAVLQRKPGALRNG PF ELPEGF++LQ+ LLKRP GDREMVEIL+LVL HDE V+ Sbjct: 385 HHYLAVLQRKPGALRNGAPFAELPEGFRRLQSTLLKRPGGDREMVEILALVLLHDEQAVL 444 Query: 361 NAVELSLESGAPSKQSILNILSRLLDGKPAPRIDAPAALTLAVEPMADIGRYDRLRKRGD 420 AVEL+LE+GAPSKQ+ILNILSRLL+G+P I +P AL L VEP A++GRYD LR R Sbjct: 445 TAVELALEAGAPSKQTILNILSRLLEGEPVAPITSPQALALHVEPQANVGRYDSLRDREV 504 Query: 421 QNAA 424 +AA Sbjct: 505 HHAA 508 >ref|YP_582638.1| transposase catalytic site ISRme4 [Cupriavidus metallidurans CH34] ref|YP_585506.1| transposase catalytic site ISRme4 [Cupriavidus metallidurans CH34] gb|ABF07369.1| transposase catalytic site ISRme4 [Cupriavidus metallidurans CH34] gb|ABF10237.1| transposase catalytic site ISRme4 [Cupriavidus metallidurans CH34] Length = 508 Score = 648 bits (1671), Expect = 0.0, Method: Composition-based stats. Identities = 308/424 (72%), Positives = 350/424 (82%) Query: 1 MHADLCVLGFEGSYDRVAAFARQWKVDQLDRVSSASKGTYIPLSFDAGEAFQFDWSEDWV 60 +HADLC LGF GSYDRVAAFAR+W+ +Q ++ S+ +GTYIPL F GEAFQFDWSEDW Sbjct: 85 IHADLCALGFTGSYDRVAAFARRWRQEQQEQARSSGRGTYIPLRFAEGEAFQFDWSEDWA 144 Query: 61 VIAGERTKLQIAHFKLSHSRAFYLKAYPIQTHEMLFDAHEHAFRVFGGIPRRGIYDNMKT 120 VIAGERTKLQ+A FKLSHSRAF+L+AY +QTHEMLFDAH HAF +GGIPRRGIYDNMKT Sbjct: 145 VIAGERTKLQVAQFKLSHSRAFFLRAYLLQTHEMLFDAHHHAFVAWGGIPRRGIYDNMKT 204 Query: 121 AVDKVKTGKQRDVNARFSAMVSHYLFDAEFCNPASGWEKGQIEKNVRDSRHRIWHTVPDF 180 AVD+V+ GK RDVN RF MVSHYLFDAEFCNPASGWEKGQIEKNV+DSRHRIW VP F Sbjct: 205 AVDRVRQGKLRDVNLRFGTMVSHYLFDAEFCNPASGWEKGQIEKNVQDSRHRIWQRVPAF 264 Query: 181 TSLEALNHWLEDECLEFWKKLQHPEDEMSIWDVWKLETQHLMPVGQPFDGFVEHTKRVSP 240 SL ALN WL D+C+ W++ +HPE +M+IW+ W LE HLMPVGQ FDGFVEHTKRVSP Sbjct: 265 GSLAALNDWLADQCVRLWQQTRHPELDMTIWEAWSLERPHLMPVGQAFDGFVEHTKRVSP 324 Query: 241 TCLITHERNRYSVPASFANRPISLRVYARHLSIVAEGRTIAEHVRYFNKDKGPGRTIYNW 300 TCL+ ERNRYSVPASFANRPISLRVYA L VAEG+ IAEHVR+ N+ PG T+Y+W Sbjct: 325 TCLVNFERNRYSVPASFANRPISLRVYATRLLFVAEGQVIAEHVRHINRGHHPGHTVYDW 384 Query: 301 RHYLAVLQRKPGALRNGTPFKELPEGFKQLQALLLKRPAGDREMVEILSLVLFHDEDIVI 360 RHYLAVLQRKPGALRNG PF ELPEGF++LQA LLKRP GDREMVEIL+LVL HDE V+ Sbjct: 385 RHYLAVLQRKPGALRNGAPFAELPEGFRRLQATLLKRPGGDREMVEILALVLLHDEQAVL 444 Query: 361 NAVELSLESGAPSKQSILNILSRLLDGKPAPRIDAPAALTLAVEPMADIGRYDRLRKRGD 420 AVEL+LE+GA SKQ++LNILSRLL+G P I P AL L VEP A++ RYD LR R Sbjct: 445 TAVELALEAGAASKQTVLNILSRLLEGGPVAPITTPQALALQVEPQANVARYDSLRDREV 504 Query: 421 QNAA 424 +AA Sbjct: 505 PHAA 508 >ref|ZP_02881458.1| Integrase catalytic region [Burkholderia graminis C4D1M] ref|ZP_02883251.1| Integrase catalytic region [Burkholderia graminis C4D1M] ref|ZP_02885217.1| Integrase catalytic region [Burkholderia graminis C4D1M] ref|ZP_02886308.1| Integrase catalytic region [Burkholderia graminis C4D1M] ref|ZP_02887697.1| Integrase catalytic region [Burkholderia graminis C4D1M] gb|EDT06734.1| Integrase catalytic region [Burkholderia graminis C4D1M] gb|EDT08192.1| Integrase catalytic region [Burkholderia graminis C4D1M] gb|EDT09305.1| Integrase catalytic region [Burkholderia graminis C4D1M] gb|EDT11535.1| Integrase catalytic region [Burkholderia graminis C4D1M] gb|EDT12887.1| Integrase catalytic region [Burkholderia graminis C4D1M] Length = 505 Score = 639 bits (1648), Expect = 0.0, Method: Composition-based stats. Identities = 300/424 (70%), Positives = 346/424 (81%) Query: 1 MHADLCVLGFEGSYDRVAAFARQWKVDQLDRVSSASKGTYIPLSFDAGEAFQFDWSEDWV 60 +HADLC LGF GSYDRVAAFAR+W+ +Q ++ + +GT++PL F AGEAFQFDWSEDW Sbjct: 82 IHADLCALGFTGSYDRVAAFARRWRQEQHEQAKTTGRGTFVPLRFAAGEAFQFDWSEDWA 141 Query: 61 VIAGERTKLQIAHFKLSHSRAFYLKAYPIQTHEMLFDAHEHAFRVFGGIPRRGIYDNMKT 120 VI GERTKLQ+A KLSHSRAF+L+AY +QTHEMLFDAH HAF +GGIPRRGIYDNMKT Sbjct: 142 VINGERTKLQVAQLKLSHSRAFFLRAYLLQTHEMLFDAHYHAFVAWGGIPRRGIYDNMKT 201 Query: 121 AVDKVKTGKQRDVNARFSAMVSHYLFDAEFCNPASGWEKGQIEKNVRDSRHRIWHTVPDF 180 AVD+V+ GK R+VNARFSAMVSHYLFDAEFCN ASGWEKGQIEKNV+DSRHR+W P F Sbjct: 202 AVDRVRPGKVREVNARFSAMVSHYLFDAEFCNVASGWEKGQIEKNVQDSRHRLWQKAPAF 261 Query: 181 TSLEALNHWLEDECLEFWKKLQHPEDEMSIWDVWKLETQHLMPVGQPFDGFVEHTKRVSP 240 SL ALN WL D+C+ W++ +HPE + +IWD W E HLMPVGQPFDGFVEHTKRVSP Sbjct: 262 GSLAALNDWLADQCVLLWQQTRHPEHDTTIWDAWAAERPHLMPVGQPFDGFVEHTKRVSP 321 Query: 241 TCLITHERNRYSVPASFANRPISLRVYARHLSIVAEGRTIAEHVRYFNKDKGPGRTIYNW 300 TCL+ ERNRYSVPASFANRPISLRVYA L VA G+ IAEH R N+ G TIY+W Sbjct: 322 TCLVNFERNRYSVPASFANRPISLRVYAAKLVFVAGGQVIAEHERRINRSHNHGETIYDW 381 Query: 301 RHYLAVLQRKPGALRNGTPFKELPEGFKQLQALLLKRPAGDREMVEILSLVLFHDEDIVI 360 RHYLAVLQRKPGALRNG PF E P GF++LQ +LLKRP GDREMVEIL+LVL HDE +V+ Sbjct: 382 RHYLAVLQRKPGALRNGAPFTEFPAGFRKLQGVLLKRPGGDREMVEILALVLLHDEQMVL 441 Query: 361 NAVELSLESGAPSKQSILNILSRLLDGKPAPRIDAPAALTLAVEPMADIGRYDRLRKRGD 420 AVEL+ E+GAP+KQ++LNILSRLLD P P + P A TL VEP A++GRYDRLR R D Sbjct: 442 AAVELAFEAGAPNKQTVLNILSRLLDSPPVPPLQTPQAFTLTVEPQANVGRYDRLRDRED 501 Query: 421 QNAA 424 +AA Sbjct: 502 NHAA 505 >ref|ZP_02882057.1| Integrase catalytic region [Burkholderia graminis C4D1M] ref|ZP_02882830.1| Integrase catalytic region [Burkholderia graminis C4D1M] ref|ZP_02885258.1| Integrase catalytic region [Burkholderia graminis C4D1M] gb|EDT09016.1| Integrase catalytic region [Burkholderia graminis C4D1M] gb|EDT12033.1| Integrase catalytic region [Burkholderia graminis C4D1M] gb|EDT12302.1| Integrase catalytic region [Burkholderia graminis C4D1M] Length = 505 Score = 636 bits (1641), Expect = e-180, Method: Composition-based stats. Identities = 299/424 (70%), Positives = 345/424 (81%) Query: 1 MHADLCVLGFEGSYDRVAAFARQWKVDQLDRVSSASKGTYIPLSFDAGEAFQFDWSEDWV 60 +HADLC LGF GSYDRVAAFAR+W+ +Q ++ + +GT++PL F AGEAFQFDWSEDW Sbjct: 82 IHADLCALGFTGSYDRVAAFARRWRQEQHEQAKTTGRGTFVPLRFAAGEAFQFDWSEDWA 141 Query: 61 VIAGERTKLQIAHFKLSHSRAFYLKAYPIQTHEMLFDAHEHAFRVFGGIPRRGIYDNMKT 120 VI GERTKLQ+A KLSHSRAF+L+AY +QTHEMLFDAH HAF +GGIPRRGIYDNMKT Sbjct: 142 VINGERTKLQVAQLKLSHSRAFFLRAYLLQTHEMLFDAHYHAFVAWGGIPRRGIYDNMKT 201 Query: 121 AVDKVKTGKQRDVNARFSAMVSHYLFDAEFCNPASGWEKGQIEKNVRDSRHRIWHTVPDF 180 AVD+V+ GK R+VNARFSAMVSHYLFDAEFCN ASGWEKGQIEKNV+DSRHR+W P F Sbjct: 202 AVDRVRPGKVREVNARFSAMVSHYLFDAEFCNVASGWEKGQIEKNVQDSRHRLWQKAPAF 261 Query: 181 TSLEALNHWLEDECLEFWKKLQHPEDEMSIWDVWKLETQHLMPVGQPFDGFVEHTKRVSP 240 SL ALN WL D+C+ W++ +HPE + +IWD W E HLMPVGQPFDGFVEHTKRVSP Sbjct: 262 GSLAALNDWLADQCVLLWQQTRHPEHDTTIWDAWAAERPHLMPVGQPFDGFVEHTKRVSP 321 Query: 241 TCLITHERNRYSVPASFANRPISLRVYARHLSIVAEGRTIAEHVRYFNKDKGPGRTIYNW 300 TCL+ ERNRYSVPASFANRPISLRVYA L VA G+ IAEH R N+ G TIY+W Sbjct: 322 TCLVNFERNRYSVPASFANRPISLRVYAAKLVFVAGGQVIAEHERRINRSHNHGETIYDW 381 Query: 301 RHYLAVLQRKPGALRNGTPFKELPEGFKQLQALLLKRPAGDREMVEILSLVLFHDEDIVI 360 RHYLAVLQRKPGALRNG PF E P GF++LQ +LLKRP GDREMVEIL+LVL HDE +V+ Sbjct: 382 RHYLAVLQRKPGALRNGAPFTEFPAGFRKLQGVLLKRPGGDREMVEILALVLLHDEQMVL 441 Query: 361 NAVELSLESGAPSKQSILNILSRLLDGKPAPRIDAPAALTLAVEPMADIGRYDRLRKRGD 420 AVEL+ E+GAP+K ++LNILSRLLD P P + P A TL VEP A++GRYDRLR R D Sbjct: 442 AAVELAFEAGAPNKPTVLNILSRLLDSPPVPPLQTPQAFTLTVEPQANVGRYDRLRDRED 501 Query: 421 QNAA 424 +AA Sbjct: 502 NHAA 505