BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.0552.p         (329 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_581898.1| hypothetical protein Rmet_6089 [Cupriavidus met...    82   1e-13
ref|YP_770828.1| hypothetical protein pRL70095 [Rhizobium legumi...    60   4e-07

>ref|YP_581898.1| hypothetical protein Rmet_6089 [Cupriavidus metallidurans CH34]
 gb|ABF12948.1| Hypothetical protein Rmet_6089 [Cupriavidus metallidurans CH34]
          Length = 405

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 71/207 (34%), Positives = 98/207 (47%), Gaps = 25/207 (12%)

Query: 2   FVYAAM-RASIVGYKIGLRGQIAGALLGAAALAYLYKPKSNSSSTADRIRLHWNAHSLKD 60
           ++Y  M RAS +G  +G  GQ        AAL+         S T    RL       KD
Sbjct: 37  WLYLTMQRASKLGLTLGGSGQETVRATAEAALSVCAWDGHGYSVTPAYSRL-------KD 89

Query: 61  FVGTGMKGTIGAALAYLEMQDLGYVWKGHWEDCINGSASGAHPDFVF------ASSTDVC 114
           +V   + GT+GA LA L+M   GY W  HWEDC  G  + AHPDFVF       +   VC
Sbjct: 90  YVKPFLSGTLGAGLALLQMDHAGYPWMAHWEDC-GGQTTSAHPDFVFFRAATATTPAAVC 148

Query: 115 LVDAKGSSSGQVLVEKTAKNEWTRQIRPNLGTVLRF---GNTA-TEGMVIAADL-AASGD 169
           L ++KGS +     +   + +W RQ+  N   VL     GN A TEG +++++L   +G 
Sbjct: 149 LAESKGSRA--TTTDLDVQKDWERQVWSNRHQVLTLPGGGNVAPTEGTLVSSELPGPAGK 206

Query: 170 VSLIST--YGRLNAATAPATPPVKASA 194
               ST  +G   +   PA  P  AS+
Sbjct: 207 KRFRSTLVHGVFPSGL-PAVTPATASS 232


>ref|YP_770828.1| hypothetical protein pRL70095 [Rhizobium leguminosarum bv. viciae
           3841]
 emb|CAK11622.1| hypothetical protein pRL70095 [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 336

 Score = 60.1 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 36/104 (34%), Positives = 58/104 (55%), Gaps = 5/104 (4%)

Query: 47  DRIRLHWNAHSLKDFVGTGMKGTIGAALAYLEMQDLGYVWKGHWED-CINGS-ASGAHPD 104
           DR  L   A +LKD+VG  M G +G  +AYL+M   GY W  H+E+  ++G   +   PD
Sbjct: 109 DRFALLDTARTLKDYVGKAMTGLVGDGIAYLQMVRDGYRWVDHFENHAVHGKPPTTRSPD 168

Query: 105 FVFASSTD--VCLVDAKGSS-SGQVLVEKTAKNEWTRQIRPNLG 145
           +VF+ + D  V L ++K +  + +    KT ++ +  Q+ P LG
Sbjct: 169 YVFSRTGDLFVALAESKATKGASRAAFTKTVRDGYHGQVEPYLG 212