BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0550.p (387 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004351216.1| hypothetical protein PSEBR_a84 [Pseudomonas ... 448 e-124 ref|YP_728629.1| hypothetical protein H16_B0467 [Ralstonia eutro... 420 e-115 gb|EGW60766.1| Radical SAM domain protein [Dechlorosoma suillum PS] 405 e-111 ref|ZP_01463412.1| radical SAM domain protein [Stigmatella auran... 341 2e-91 ref|YP_003955726.1| radical sam domain-containing protein [Stigm... 341 2e-91 >ref|YP_004351216.1| hypothetical protein PSEBR_a84 [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gb|AEA66212.1| Conserved hypothetical protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 387 Score = 448 bits (1153), Expect = e-124, Method: Composition-based stats. Identities = 213/388 (54%), Positives = 274/388 (70%), Gaps = 5/388 (1%) Query: 1 MLKLRGKVQVFN--KTWFEPRLLTITSNANLPDVLRKKHALMLDEQSNTSTGFAATIFRN 58 MLKL GKV + P LL +++N P VLR A ++ EQ G+ + Sbjct: 1 MLKLSGKVGRIQLIEVQDRPLLLQVSTNPATPMVLRATRAFLVSEQE-LPEGYQHYLIPE 59 Query: 59 CSVDEFNPIGLGENLYLVGSDYDYLSDGDVVRLNPNTDYVSSLYRRSSNHNTVLLTERCN 118 + + L+ +DY YL GD++RL+ + L+R +S HN++L+TE+CN Sbjct: 60 SLERRVQELEGKSSFTLLPNDYHYLGHGDIIRLDGQA--IRVLFRANSGHNSLLVTEQCN 117 Query: 119 NYCLMCSQPPKDSNDNWLIEEAFDLIKLLPTQTQSLGFSGGEPTLYGSRFIELMQHAKNF 178 +YCLMCSQPPK+ +D+W+++E LI L+P +T +GFSGGEPTL G+RFI L++ K++ Sbjct: 118 HYCLMCSQPPKNIDDSWILDELEALIPLIPRETPEVGFSGGEPTLAGARFINLIRMMKSY 177 Query: 179 LPTTSLDVLSNGRGFKDEAFAQALGSVAHPDLMIGIPLYSDDPVRHDYVVQAKGAFDETI 238 LP T + VLSNGR F DE FA+ + HPD+MIGIPLYSDDP HDY+VQA GAF ET+ Sbjct: 178 LPRTVVHVLSNGRTFADECFARQYAEIDHPDIMIGIPLYSDDPDLHDYIVQAPGAFQETV 237 Query: 239 QGILNLKRFGQKVEIRIVIHKETLPRLVETCEFIARNLLFVDHVALMGLEITGFTRANLS 298 QGILNLKR QKVEIRIV+HK+++ RL + CE+IARNLLFVDHV LMGLE+ GFTRANL Sbjct: 238 QGILNLKRLSQKVEIRIVLHKQSISRLPQLCEYIARNLLFVDHVTLMGLEMIGFTRANLD 297 Query: 299 LLWADPYEYRDVLSEAASILTSYRINASIYNHQLCTINSDVFPVYRKSISDWKNEYIEKC 358 LW DP +YRDVLSEA IL +YR+N S+YNHQLC +N DV P YRKSISDWKNEY+ +C Sbjct: 298 ALWIDPTDYRDVLSEAVGILAAYRMNVSVYNHQLCLVNDDVLPYYRKSISDWKNEYVPEC 357 Query: 359 MTCSRKAECGGFFSSAVQYRYSDHITPF 386 C+RK++CGGFFSS V+ YS ITPF Sbjct: 358 EGCARKSQCGGFFSSGVRNGYSRAITPF 385 >ref|YP_728629.1| hypothetical protein H16_B0467 [Ralstonia eutropha H16] emb|CAJ95264.1| conserved hypothetical protein [Ralstonia eutropha H16] Length = 390 Score = 420 bits (1080), Expect = e-115, Method: Composition-based stats. Identities = 206/371 (55%), Positives = 262/371 (70%), Gaps = 8/371 (2%) Query: 19 RLLTITSNANLPDVLRKKHALMLDEQSNTSTGFAATIFRNCSVDEFNPIGLGENL--YLV 76 R ++++N LP LR A + TGFA N P L +++ L+ Sbjct: 26 RQFSLSTNPALPLPLRGARAYLSRSNVPAPTGFAHYFAFN-----ERPTSLTDDIPCTLL 80 Query: 77 GSDYDYLSDGDVVRLNPNTDYVSSLYRRSSNHNTVLLTERCNNYCLMCSQPPKDSNDNWL 136 ++ YL++GDVV L + + +L+R SNHN++LLTE+CNNYCLMCSQPPK +D WL Sbjct: 81 TDEFSYLAEGDVVSLTGD-GRIRALFRAESNHNSILLTEQCNNYCLMCSQPPKKVDDRWL 139 Query: 137 IEEAFDLIKLLPTQTQSLGFSGGEPTLYGSRFIELMQHAKNFLPTTSLDVLSNGRGFKDE 196 ++EA + ++L+P T+SLG +GGEPTL+G FI+L+ +N+LP TSL +LSNGR F Sbjct: 140 LDEAMETVRLIPRNTRSLGITGGEPTLFGDGFIDLLHQIRNWLPRTSLHILSNGRTFAAA 199 Query: 197 AFAQALGSVAHPDLMIGIPLYSDDPVRHDYVVQAKGAFDETIQGILNLKRFGQKVEIRIV 256 AFA+ +V HPD+MIGIP+YS DP RHDYVVQA+GAFDETI+GILNLKR QKVEIR+V Sbjct: 200 AFAEQYAAVQHPDVMIGIPVYSADPARHDYVVQAEGAFDETIRGILNLKRLNQKVEIRVV 259 Query: 257 IHKETLPRLVETCEFIARNLLFVDHVALMGLEITGFTRANLSLLWADPYEYRDVLSEAAS 316 +HK+T L EFIARNLLFVDHVALMGLE+TGFTRANL LW DP +Y+ LS A Sbjct: 260 VHKQTYKGLPALSEFIARNLLFVDHVALMGLEMTGFTRANLDALWIDPADYKTELSTAVG 319 Query: 317 ILTSYRINASIYNHQLCTINSDVFPVYRKSISDWKNEYIEKCMTCSRKAECGGFFSSAVQ 376 IL SY + S+YNHQLC +N+DV P Y KSISDWKNEY +C C+RKAECGGFFSS ++ Sbjct: 320 ILRSYGLKTSVYNHQLCLVNADVEPAYVKSISDWKNEYAPECEPCARKAECGGFFSSGIR 379 Query: 377 YRYSDHITPFS 387 YS I PF+ Sbjct: 380 NGYSKSIRPFA 390 >gb|EGW60766.1| Radical SAM domain protein [Dechlorosoma suillum PS] Length = 384 Score = 405 bits (1042), Expect = e-111, Method: Composition-based stats. Identities = 200/390 (51%), Positives = 269/390 (68%), Gaps = 11/390 (2%) Query: 1 MLKLRGKVQVFNKTWFEPR-LLTITSNANLPDVLRKKHALMLDEQSNTSTGFAATIFRNC 59 ML L GKV T R L +++N +LP LR A +++ + +GF+ + Sbjct: 1 MLTLSGKVIQLQTTMPSGRHLWVLSTNPDLPRPLRCSRAFLIN-SAVIPSGFSHYLAFGS 59 Query: 60 SVDEFNPIGLGE--NLYLVGSDYDYLSDGDVVRLNPNTDYVSSLYRRSSNHNTVLLTERC 117 P+ L E ++G+++ YL + DV+ L + + S++R +S HN+++LTE+C Sbjct: 60 V-----PVSLPERATCTVLGNEFSYLGENDVISLTSD-GRIRSMFRANSPHNSIMLTEQC 113 Query: 118 NNYCLMCSQPPKDSNDNWLIEEAFDLIKLLPTQT-QSLGFSGGEPTLYGSRFIELMQHAK 176 NNYCLMCSQPPK+ +D WL++EA +L++L+P + + SGGEPTL G FI+L+ K Sbjct: 114 NNYCLMCSQPPKNVDDRWLLDEAMELVRLIPRHAAKVMCISGGEPTLLGDGFIDLLHLLK 173 Query: 177 NFLPTTSLDVLSNGRGFKDEAFAQALGSVAHPDLMIGIPLYSDDPVRHDYVVQAKGAFDE 236 + LP +L VLSNGR F + AF++ +V HPDLM+GIP+YS DP +HDYVVQAKGAFDE Sbjct: 174 SRLPDAALHVLSNGRRFSNVAFSKKYAAVQHPDLMVGIPVYSADPAKHDYVVQAKGAFDE 233 Query: 237 TIQGILNLKRFGQKVEIRIVIHKETLPRLVETCEFIARNLLFVDHVALMGLEITGFTRAN 296 TI+GILNLKR Q+VEIR+V+HK+T L E+IARNLLFVD VALMGLE+TGFTRAN Sbjct: 234 TIRGILNLKRLNQRVEIRVVVHKQTCDGLPALAEYIARNLLFVDQVALMGLEMTGFTRAN 293 Query: 297 LSLLWADPYEYRDVLSEAASILTSYRINASIYNHQLCTINSDVFPVYRKSISDWKNEYIE 356 L LW DP EY+D LS+A IL +Y I S+YN LC ++ D+ Y KSISDWKNEY + Sbjct: 294 LESLWIDPVEYKDKLSQAVKILQNYGIKVSVYNQPLCLVSPDIEQAYVKSISDWKNEYAQ 353 Query: 357 KCMTCSRKAECGGFFSSAVQYRYSDHITPF 386 +C C+RK+ECGGFFSSA+QY YS I+PF Sbjct: 354 ECGPCTRKSECGGFFSSAIQYGYSGSISPF 383 >ref|ZP_01463412.1| radical SAM domain protein [Stigmatella aurantiaca DW4/3-1] gb|EAU65811.1| radical SAM domain protein [Stigmatella aurantiaca DW4/3-1] Length = 385 Score = 341 bits (874), Expect = 2e-91, Method: Composition-based stats. Identities = 164/301 (54%), Positives = 219/301 (72%) Query: 74 YLVGSDYDYLSDGDVVRLNPNTDYVSSLYRRSSNHNTVLLTERCNNYCLMCSQPPKDSND 133 YL+ + L++GDVVR+ P+ VS+LYR++S N++L+TERC+NYCLMCSQPP+ +D Sbjct: 72 YLLPAGLFPLAEGDVVRVEPSQGRVSTLYRKASLSNSLLVTERCDNYCLMCSQPPRPHDD 131 Query: 134 NWLIEEAFDLIKLLPTQTQSLGFSGGEPTLYGSRFIELMQHAKNFLPTTSLDVLSNGRGF 193 +WL+EE +LI L+ +T+ LG +GGEP L G + L++ K LP T++ +LSNGR F Sbjct: 132 SWLLEELMELIPLISPETRELGITGGEPGLLGEGLLRLVEGLKTHLPMTAVHMLSNGRRF 191 Query: 194 KDEAFAQALGSVAHPDLMIGIPLYSDDPVRHDYVVQAKGAFDETIQGILNLKRFGQKVEI 253 +E FAQ LG V HPDLM+GIPLYSD P HD+VVQA+GA+D+T++GILNLKR G +VE+ Sbjct: 192 SEEGFAQGLGQVRHPDLMVGIPLYSDLPEEHDHVVQARGAYDDTVRGILNLKRAGVRVEL 251 Query: 254 RIVIHKETLPRLVETCEFIARNLLFVDHVALMGLEITGFTRANLSLLWADPYEYRDVLSE 313 R+VIH T RL E FIARNLLFVDHVALMGLE+ GF + NL LW DP +Y++ L Sbjct: 252 RVVIHAFTYERLPELARFIARNLLFVDHVALMGLELMGFAKTNLLKLWVDPLDYQESLRA 311 Query: 314 AASILTSYRINASIYNHQLCTINSDVFPVYRKSISDWKNEYIEKCMTCSRKAECGGFFSS 373 + IL ++ S+YNH LC + +D+ P RKSISDWKN Y +C CS + CGGFF+S Sbjct: 312 SVRILDRAGVSTSLYNHPLCVLPTDLHPFARKSISDWKNVYFRECEGCSLREACGGFFAS 371 Query: 374 A 374 + Sbjct: 372 S 372 >ref|YP_003955726.1| radical sam domain-containing protein [Stigmatella aurantiaca DW4/3-1] gb|ADO73899.1| Radical SAM domain protein [Stigmatella aurantiaca DW4/3-1] Length = 384 Score = 341 bits (874), Expect = 2e-91, Method: Composition-based stats. Identities = 164/301 (54%), Positives = 219/301 (72%) Query: 74 YLVGSDYDYLSDGDVVRLNPNTDYVSSLYRRSSNHNTVLLTERCNNYCLMCSQPPKDSND 133 YL+ + L++GDVVR+ P+ VS+LYR++S N++L+TERC+NYCLMCSQPP+ +D Sbjct: 71 YLLPAGLFPLAEGDVVRVEPSQGRVSTLYRKASLSNSLLVTERCDNYCLMCSQPPRPHDD 130 Query: 134 NWLIEEAFDLIKLLPTQTQSLGFSGGEPTLYGSRFIELMQHAKNFLPTTSLDVLSNGRGF 193 +WL+EE +LI L+ +T+ LG +GGEP L G + L++ K LP T++ +LSNGR F Sbjct: 131 SWLLEELMELIPLISPETRELGITGGEPGLLGEGLLRLVEGLKTHLPMTAVHMLSNGRRF 190 Query: 194 KDEAFAQALGSVAHPDLMIGIPLYSDDPVRHDYVVQAKGAFDETIQGILNLKRFGQKVEI 253 +E FAQ LG V HPDLM+GIPLYSD P HD+VVQA+GA+D+T++GILNLKR G +VE+ Sbjct: 191 SEEGFAQGLGQVRHPDLMVGIPLYSDLPEEHDHVVQARGAYDDTVRGILNLKRAGVRVEL 250 Query: 254 RIVIHKETLPRLVETCEFIARNLLFVDHVALMGLEITGFTRANLSLLWADPYEYRDVLSE 313 R+VIH T RL E FIARNLLFVDHVALMGLE+ GF + NL LW DP +Y++ L Sbjct: 251 RVVIHAFTYERLPELARFIARNLLFVDHVALMGLELMGFAKTNLLKLWVDPLDYQESLRA 310 Query: 314 AASILTSYRINASIYNHQLCTINSDVFPVYRKSISDWKNEYIEKCMTCSRKAECGGFFSS 373 + IL ++ S+YNH LC + +D+ P RKSISDWKN Y +C CS + CGGFF+S Sbjct: 311 SVRILDRAGVSTSLYNHPLCVLPTDLHPFARKSISDWKNVYFRECEGCSLREACGGFFAS 370 Query: 374 A 374 + Sbjct: 371 S 371