BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0549.p (502 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004351215.1| hypothetical protein PSEBR_a83 [Pseudomonas ... 568 e-160 gb|EGW60767.1| Radical SAM domain protein [Dechlorosoma suillum PS] 566 e-159 ref|YP_728630.1| putative arylsulfatase regulator [Ralstonia eut... 560 e-157 ref|YP_003955727.1| hypothetical protein STAUR_6143 [Stigmatella... 512 e-143 ref|ZP_01463422.1| radical SAM domain protein [Stigmatella auran... 489 e-136 >ref|YP_004351215.1| hypothetical protein PSEBR_a83 [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gb|AEA66211.1| Conserved hypothetical protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 468 Score = 568 bits (1465), Expect = e-160, Method: Composition-based stats. Identities = 274/479 (57%), Positives = 352/479 (73%), Gaps = 13/479 (2%) Query: 24 LLPFSFSELDQARYVLTNIAGQYFTSREVRSGQYFVVSKEDLHSFANHKLPSTSSTYIDL 83 +LPF F L+ Y++TN+ G+Y V+ +LH L + + L Sbjct: 1 MLPFKFDRLEGDNYIITNMTGEYLE-----------VAMPELHVLLAKDLATEHPLFASL 49 Query: 84 RARHFLADSHSRMAPDLLAIKLRTRSERLADFTSLHIFVVTLRCEHSCPYCQVSRQSEDK 143 RA+HF+ + + DLLA+KLRTR RL FTSLHIFVVTLRC+HSCPYCQVSRQ + + Sbjct: 50 RAKHFIRYADEQAPLDLLALKLRTRLSRLTGFTSLHIFVVTLRCDHSCPYCQVSRQMDGE 109 Query: 144 ETFDMSVSHANASLAIAMRSPAKNLKIEFQGGESLLNFELIKHIVIEAKRLNENAVESKN 203 +FDM+ A+ +L RSP +KIEFQGGE LLNF++++++V AKR N + E ++ Sbjct: 110 TSFDMTPDMADKALDFVFRSPNPAIKIEFQGGEPLLNFQMVRYVVKAAKRRNLD--EKRD 167 Query: 204 LGFVIATNLAIITDEILHFCKAHDIYISTSLDGPKALHNKNRPRPGGDSYERVTAGIDRV 263 L FVIAT L+++TDE+L FC HDI +STSLDGP LHN NRPR G DS+ER AG+ + Sbjct: 168 LEFVIATTLSLLTDEVLAFCYEHDIILSTSLDGPADLHNANRPRVGRDSFERFEAGLAKA 227 Query: 264 RNYLGREKVSALMTTTEAALSQVKEIINEYLDRNFNGIFLRPLSPYGFAIKTKSYRAYNT 323 RN LG ++VSALMTTT+ +L +V+EII+EY+ FNGIFLR LSPYGFAIKT+ + Y+T Sbjct: 228 RNVLGVDRVSALMTTTDKSLPRVREIIDEYVRLGFNGIFLRALSPYGFAIKTRKFMTYDT 287 Query: 324 NRWLDFYFEGLEYIIELNRQGIEFREQYAATILRKMLTSTDPGYVDLMSPAGVAVGAIVY 383 RWL+FY EGL YI+ELN+ GI F E YA+ IL+KMLTS DPGYVDLM+PAG + AIV+ Sbjct: 288 ERWLEFYKEGLAYILELNKAGIPFVEHYASLILKKMLTSNDPGYVDLMNPAGAGIAAIVF 347 Query: 384 NYDGSVFASDESRMLAEMGDQKFRLGNVADNSYEEIFLNDTLLEALDDSFAQSVPMCTDC 443 NYDGSV+ASDESRMLAEMGDQ FRLG++ +SYE+I L+D LL+AL+ SF S PMC+DC Sbjct: 348 NYDGSVYASDESRMLAEMGDQTFRLGSILTDSYEDIILSDVLLDALEQSFTLSAPMCSDC 407 Query: 444 AFEPFCGSDPVFHWGQHRDLVGRKTESEFCQRNMSIFKYLIEKMESDRFVRALFLKWAN 502 AFEP+CG++PVFH RD++GRK ES FC+RNMSIFK+LI M+SD R LF++WAN Sbjct: 408 AFEPYCGAEPVFHHAIFRDVLGRKAESSFCKRNMSIFKHLIGLMKSDVSTRHLFMQWAN 466 >gb|EGW60767.1| Radical SAM domain protein [Dechlorosoma suillum PS] Length = 486 Score = 566 bits (1459), Expect = e-159, Method: Composition-based stats. Identities = 275/502 (54%), Positives = 360/502 (71%), Gaps = 18/502 (3%) Query: 1 MSKFHPIAFYENPSDRLLNPEYDLLPFSFSELDQARYVLTNIAGQYFTSREVRSGQYFVV 60 MSKF + Y + + Y+LLPF F L+ VLTN G++ + Sbjct: 1 MSKFQGLDAYISTTG-----AYELLPFRFERLEGGEVVLTNAVGEFA-----------FL 44 Query: 61 SKEDLHSFANHKLPSTSSTYIDLRARHFLADSHSRMAPDLLAIKLRTRSERLADFTSLHI 120 +E L + +H+LP T S Y LR +H L + +LLA+K RTR LA+FT+LH+ Sbjct: 45 PQEKLQALVDHQLPPTDSDYAMLRMKHILREPGDEATLELLALKTRTRLSHLANFTNLHL 104 Query: 121 FVVTLRCEHSCPYCQVSRQSEDKETFDMSVSHANASLAIAMRSPAKNLKIEFQGGESLLN 180 FVV+LRC+HSC YCQVSRQSEDK FDM+ A+ SL I RSP + +KIEFQGGE LLN Sbjct: 105 FVVSLRCDHSCQYCQVSRQSEDKAAFDMTRETADKSLDIVFRSPNQAIKIEFQGGEPLLN 164 Query: 181 FELIKHIVIEAKRLNENAVESKNLGFVIATNLAIITDEILHFCKAHDIYISTSLDGPKAL 240 F LI+++V +A++ N E +NL FVI T L++ TD+IL +C+ H I +S+SLDGP+ L Sbjct: 165 FPLIQYVVEKAEQ--RNVAEQRNLQFVITTTLSLATDDILGYCRDHSIILSSSLDGPEDL 222 Query: 241 HNKNRPRPGGDSYERVTAGIDRVRNYLGREKVSALMTTTEAALSQVKEIINEYLDRNFNG 300 HNKNRPRPG DSY R G++R R+ +G + VSALMTT+ A++++VK+II+EY+ FNG Sbjct: 223 HNKNRPRPGRDSYARFVDGLNRARDIVGYDAVSALMTTSPASIARVKDIIDEYVRLGFNG 282 Query: 301 IFLRPLSPYGFAIKTKSYRAYNTNRWLDFYFEGLEYIIELNRQGIEFREQYAATILRKML 360 IFLR LSPYGFA+KTKSY+AYNT +WL F+ EGL+YIIELN+ GI F E Y+ +L KML Sbjct: 283 IFLRHLSPYGFALKTKSYQAYNTEQWLKFFKEGLDYIIELNKAGIPFIEHYSNILLTKML 342 Query: 361 TSTDPGYVDLMSPAGVAVGAIVYNYDGSVFASDESRMLAEMGDQKFRLGNVADNSYEEIF 420 TSTDPG+VDL +P+G + A+V+NYDG V+ASDESRML EMGD FRLGNV +NSYEEIF Sbjct: 343 TSTDPGFVDLSNPSGAGITAVVFNYDGEVYASDESRMLKEMGDASFRLGNVHENSYEEIF 402 Query: 421 LNDTLLEALDDSFAQSVPMCTDCAFEPFCGSDPVFHWGQHRDLVGRKTESEFCQRNMSIF 480 + LL AL++SF SVPMCTDCAFEP+CG+DPVFH G + D++GRK ESEFC+R + Sbjct: 403 TAEGLLTALEESFTLSVPMCTDCAFEPWCGADPVFHHGMYGDMLGRKPESEFCKRTTGVA 462 Query: 481 KYLIEKMESDRFVRALFLKWAN 502 KYL+E M+ D+ + LF++W N Sbjct: 463 KYLLEIMKKDQEAKELFMRWVN 484 >ref|YP_728630.1| putative arylsulfatase regulator [Ralstonia eutropha H16] emb|CAJ95265.1| conserved hypothetical protein, putative arylsulfatase regulator [Ralstonia eutropha H16] Length = 487 Score = 560 bits (1442), Expect = e-157, Method: Composition-based stats. Identities = 267/502 (53%), Positives = 361/502 (71%), Gaps = 17/502 (3%) Query: 1 MSKFHPIAFYENPSDRLLNPEYDLLPFSFSELDQARYVLTNIAGQYFTSREVRSGQYFVV 60 M+KF + Y++ + Y LLPF F LD V TN G++ + Sbjct: 1 MNKFRSLESYQSKN----AGRYQLLPFRFEALDNENVVATNAVGEFA-----------FL 45 Query: 61 SKEDLHSFANHKLPSTSSTYIDLRARHFLADSHSRMAPDLLAIKLRTRSERLADFTSLHI 120 S+ L H+L + YI LR+RHFL ++ + +LL +K RT+ +L++FT+LHI Sbjct: 46 SRRQLEDLVAHRLSPSDPDYITLRSRHFLREAGDEASLELLTLKTRTKFSKLSNFTNLHI 105 Query: 121 FVVTLRCEHSCPYCQVSRQSEDKETFDMSVSHANASLAIAMRSPAKNLKIEFQGGESLLN 180 FV +LRC+HSC YCQVSRQSE+K FDM+ A+ +L + RSP +KIEFQGGE LLN Sbjct: 106 FVASLRCDHSCQYCQVSRQSENKAAFDMTPETADKALDLVFRSPNPAIKIEFQGGEPLLN 165 Query: 181 FELIKHIVIEAKRLNENAVESKNLGFVIATNLAIITDEILHFCKAHDIYISTSLDGPKAL 240 FELI+++V +A+++N+ VE ++L FVI T L++ TDEIL FC+ H I++S+SLDGP L Sbjct: 166 FELIRYVVKKAEKINK--VEGRDLQFVITTTLSLATDEILEFCRDHKIFLSSSLDGPADL 223 Query: 241 HNKNRPRPGGDSYERVTAGIDRVRNYLGREKVSALMTTTEAALSQVKEIINEYLDRNFNG 300 HNKNRPRPG DS+ER +G+ R R+ +G + VSALMTT+ A+L++V++II+EYL F+G Sbjct: 224 HNKNRPRPGRDSHERFVSGLKRARDMVGYDSVSALMTTSPASLNRVRDIIDEYLKHGFDG 283 Query: 301 IFLRPLSPYGFAIKTKSYRAYNTNRWLDFYFEGLEYIIELNRQGIEFREQYAATILRKML 360 IFLR LSPYGFA+KTKS++AYNT RWL+FY EG++YI+ LN+ G F E Y+ +L KM+ Sbjct: 284 IFLRHLSPYGFALKTKSFQAYNTERWLEFYKEGMDYILALNKAGTPFTEYYSTLLLTKMM 343 Query: 361 TSTDPGYVDLMSPAGVAVGAIVYNYDGSVFASDESRMLAEMGDQKFRLGNVADNSYEEIF 420 ++ DPG+VDLM+PAG + A+V+NYDG V+ASDESRML EMGD FR+GNV NSYEEIF Sbjct: 344 SAEDPGFVDLMTPAGAGIAAVVFNYDGDVYASDESRMLREMGDTTFRIGNVHQNSYEEIF 403 Query: 421 LNDTLLEALDDSFAQSVPMCTDCAFEPFCGSDPVFHWGQHRDLVGRKTESEFCQRNMSIF 480 D LL AL+DSF S PMC+DCAFEP+CGSDPVFH G + D++GRK ES+FC+R M I Sbjct: 404 TADALLTALEDSFTASAPMCSDCAFEPWCGSDPVFHHGMYGDVLGRKPESDFCKRVMGIT 463 Query: 481 KYLIEKMESDRFVRALFLKWAN 502 KYL++KM +D R +F++W N Sbjct: 464 KYLLDKMRNDEAAREIFMRWVN 485 >ref|YP_003955727.1| hypothetical protein STAUR_6143 [Stigmatella aurantiaca DW4/3-1] gb|ADO73900.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1] Length = 480 Score = 512 bits (1319), Expect = e-143, Method: Composition-based stats. Identities = 248/481 (51%), Positives = 331/481 (68%), Gaps = 13/481 (2%) Query: 20 PEYDLLPFSFSELDQARYVLTNIAGQYFTSREVRSGQYFVVSKEDLHSFANHKLPSTSST 79 P+Y L PF FS LD RYV+TN G++ V+S+E L +F LP S T Sbjct: 12 PDYRLAPFRFSPLDDRRYVVTN-----------DVGEHVVLSREHLVAFVQRTLPPDSPT 60 Query: 80 YIDLRARHFLADSHSRMAPDLLAIKLRTRSERLADFTSLHIFVVTLRCEHSCPYCQVSRQ 139 Y L++RHF+ D SR+A DLLA+K RTR+E+LA FT LHIFVVTLRC+HSC YCQVSRQ Sbjct: 61 YKALKSRHFMFDRQSRVALDLLALKYRTRAEQLAAFTGLHIFVVTLRCDHSCQYCQVSRQ 120 Query: 140 SEDKETFDMSVSHANASLAIAMRSPAKNLKIEFQGGESLLNFELIKHIVIEAKRLNENAV 199 ED+ FDM+ HA+ +L + +SP+ LKIEFQGGE LLNF LI+H+V A LN+ Sbjct: 121 VEDRARFDMTREHADRALDLVFQSPSPALKIEFQGGEPLLNFGLIRHVVERALTLNQPL- 179 Query: 200 ESKNLGFVIATNLAIITDEILHFCKAHDIYISTSLDGPKALHNKNRPRPGGDSYERVTAG 259 ++L FVIATNL+ +++E+L FCK H I++STSLDGP+ALHN RP GG+S++R G Sbjct: 180 -GRDLQFVIATNLSRLSEEMLAFCKQHGIFLSTSLDGPEALHNAQRPVRGGNSHQRTVEG 238 Query: 260 IDRVRNYLGREKVSALMTTTEAALSQVKEIINEYLDRNFNGIFLRPLSPYGFAIKTKSYR 319 I R R LG + VSALMTTT +L +V+EII+EY+ F+ +FLR LSPYGFA++ K + Sbjct: 239 IRRAREALGDQAVSALMTTTRTSLDRVEEIIDEYVHLGFHSVFLRNLSPYGFAVRGKGGQ 298 Query: 320 AYNTNRWLDFYFEGLEYIIELNRQGIEFREQYAATILRKMLTSTDPGYVDLMSPAGVAVG 379 Y+ +RW+ FY GL +I+ELN +G RE++ +L+K+ + YVDL SPAG+ +G Sbjct: 299 DYDVDRWIAFYQRGLAHILELNAKGYALREEFTTLLLQKLFSPQGSNYVDLQSPAGLGIG 358 Query: 380 AIVYNYDGSVFASDESRMLAEMGDQKFRLGNVADNSYEEIFLNDTLLEALDDSFAQSVPM 439 A+VYNYDG+V+ASDE RMLAEMGD FRLG+VA + + + ++TLL L D+ + VPM Sbjct: 359 ALVYNYDGAVYASDEGRMLAEMGDLSFRLGHVATDGHAALLTSETLLAHLSDTMPEGVPM 418 Query: 440 CTDCAFEPFCGSDPVFHWGQHRDLVGRKTESEFCQRNMSIFKYLIEKMESDRFVRALFLK 499 C+DCAF P CG+DPVFH D VG K S FC++ M++ ++LI +E D R L Sbjct: 419 CSDCAFLPLCGADPVFHRATQGDAVGHKAFSAFCKKQMAVLRHLITLLEDDPPARETLLG 478 Query: 500 W 500 W Sbjct: 479 W 479 >ref|ZP_01463422.1| radical SAM domain protein [Stigmatella aurantiaca DW4/3-1] gb|EAU65821.1| radical SAM domain protein [Stigmatella aurantiaca DW4/3-1] Length = 441 Score = 489 bits (1260), Expect = e-136, Method: Composition-based stats. Identities = 232/442 (52%), Positives = 312/442 (70%), Gaps = 2/442 (0%) Query: 59 VVSKEDLHSFANHKLPSTSSTYIDLRARHFLADSHSRMAPDLLAIKLRTRSERLADFTSL 118 ++S+E L +F LP S TY L++RHF+ D SR+A DLLA+K RTR+E+LA FT L Sbjct: 1 MLSREHLVAFVQRTLPPDSPTYKALKSRHFMFDRQSRVALDLLALKYRTRAEQLAAFTGL 60 Query: 119 HIFVVTLRCEHSCPYCQVSRQSEDKETFDMSVSHANASLAIAMRSPAKNLKIEFQGGESL 178 HIFVVTLRC+HSC YCQVSRQ ED+ FDM+ HA+ +L + +SP+ LKIEFQGGE L Sbjct: 61 HIFVVTLRCDHSCQYCQVSRQVEDRARFDMTREHADRALDLVFQSPSPALKIEFQGGEPL 120 Query: 179 LNFELIKHIVIEAKRLNENAVESKNLGFVIATNLAIITDEILHFCKAHDIYISTSLDGPK 238 LNF LI+H+V A LN+ ++L FVIATNL+ +++E+L FCK H I++STSLDGP+ Sbjct: 121 LNFGLIRHVVERALTLNQPL--GRDLQFVIATNLSRLSEEMLAFCKQHGIFLSTSLDGPE 178 Query: 239 ALHNKNRPRPGGDSYERVTAGIDRVRNYLGREKVSALMTTTEAALSQVKEIINEYLDRNF 298 ALHN RP GG+S++R GI R R LG + VSALMTTT +L +V+EII+EY+ F Sbjct: 179 ALHNAQRPVRGGNSHQRTVEGIRRAREALGDQAVSALMTTTRTSLDRVEEIIDEYVHLGF 238 Query: 299 NGIFLRPLSPYGFAIKTKSYRAYNTNRWLDFYFEGLEYIIELNRQGIEFREQYAATILRK 358 + +FLR LSPYGFA++ K + Y+ +RW+ FY GL +I+ELN +G RE++ +L+K Sbjct: 239 HSVFLRNLSPYGFAVRGKGGQDYDVDRWIAFYQRGLAHILELNAKGYALREEFTTLLLQK 298 Query: 359 MLTSTDPGYVDLMSPAGVAVGAIVYNYDGSVFASDESRMLAEMGDQKFRLGNVADNSYEE 418 + + YVDL SPAG+ +GA+VYNYDG+V+ASDE RMLAEMGD FRLG+VA + + Sbjct: 299 LFSPQGSNYVDLQSPAGLGIGALVYNYDGAVYASDEGRMLAEMGDLSFRLGHVATDGHAA 358 Query: 419 IFLNDTLLEALDDSFAQSVPMCTDCAFEPFCGSDPVFHWGQHRDLVGRKTESEFCQRNMS 478 + ++TLL L D+ + VPMC+DCAF P CG+DPVFH D VG K S FC++ M+ Sbjct: 359 LLTSETLLAHLSDTMPEGVPMCSDCAFLPLCGADPVFHRATQGDAVGHKAFSAFCKKQMA 418 Query: 479 IFKYLIEKMESDRFVRALFLKW 500 + ++LI +E D R L W Sbjct: 419 VLRHLITLLEDDPPARETLLGW 440