BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.0548.p         (107 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EGW60768.1| hypothetical protein DsuiDRAFT_02518 [Dechlorosom...    71   7e-11
ref|ZP_01463397.1| hypothetical protein STIAU_6232 [Stigmatella ...    64   6e-09
ref|YP_003955728.1| hypothetical protein STAUR_6144 [Stigmatella...    63   2e-08

>gb|EGW60768.1| hypothetical protein DsuiDRAFT_02518 [Dechlorosoma suillum PS]
          Length = 96

 Score = 70.9 bits (172), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 42/94 (44%), Positives = 59/94 (62%), Gaps = 2/94 (2%)

Query: 4  TTLKFDAEIYSVLAIEKGCYRLSDVLSSVIAKDGNDFLVEITFLGKGKTTEGMDATLARL 63
          T L+ D+ +Y + A++K  YR  D L+ +I++  N  + EI  +   K +  +D  LA  
Sbjct: 3  TLLELDSSVYFLEAVQKAAYRFIDRLTVLISQTENKVVCEIEPVPGLKLS--LDEVLADF 60

Query: 64 KNEILDQNLREKIKVETAATRNLILAYAFSRTGL 97
          K E+LDQ LR KIK ET   RNL+LAYAFSR+GL
Sbjct: 61 KRELLDQQLRIKIKAETTDVRNLVLAYAFSRSGL 94


>ref|ZP_01463397.1| hypothetical protein STIAU_6232 [Stigmatella aurantiaca DW4/3-1]
 gb|EAU65796.1| hypothetical protein STIAU_6232 [Stigmatella aurantiaca DW4/3-1]
          Length = 119

 Score = 64.3 bits (155), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 39/100 (39%), Positives = 52/100 (52%), Gaps = 2/100 (2%)

Query: 3   VTTLKFDAEIYSVLAIEKGCYRLSDVLSSVIA-KDGNDFLVEITFLGKGKTTEGMDATLA 61
           V  L  D  +Y + A++K  YR ++  + V+   DG    V   F    +  E +DA   
Sbjct: 21  VVRLTLDLRVYRLAAVQKASYRFAEHFTVVLGTSDGQLLPVTCLFRPDTRKAEALDAVRC 80

Query: 62  RLKNEILDQNLREKIKVETAATRNLILAYAFSRTGLISND 101
             + E+LDQ LRE+I  ET   R LILA AFSRT LI  D
Sbjct: 81  YFQ-ELLDQELREQIGEETRPVRALILAQAFSRTDLIRRD 119


>ref|YP_003955728.1| hypothetical protein STAUR_6144 [Stigmatella aurantiaca DW4/3-1]
 gb|ADO73901.1| uncharacterized protein [Stigmatella aurantiaca DW4/3-1]
          Length = 109

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/100 (39%), Positives = 52/100 (52%), Gaps = 2/100 (2%)

Query: 3   VTTLKFDAEIYSVLAIEKGCYRLSDVLSSVIA-KDGNDFLVEITFLGKGKTTEGMDATLA 61
           V  L  D  +Y + A++K  YR ++  + V+   DG    V   F    +  E +DA   
Sbjct: 11  VVRLTLDLRVYRLAAVQKASYRFAEHFTVVLGTSDGQLLPVTCLFRPDTRKAEALDAVRC 70

Query: 62  RLKNEILDQNLREKIKVETAATRNLILAYAFSRTGLISND 101
             + E+LDQ LRE+I  ET   R LILA AFSRT LI  D
Sbjct: 71  YFQ-ELLDQELREQIGEETRPVRALILAQAFSRTDLIRRD 109