BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0538.p (295 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773937.1| LysR family transcription regulator protein ... 535 e-150 ref|YP_004126996.1| lysr substrate-binding protein [Alicycliphil... 385 e-105 ref|YP_548299.1| LysR family transcriptional regulator [Polaromo... 349 3e-94 ref|YP_001793285.1| LysR family transcriptional regulator [Lepto... 322 6e-86 ref|YP_003774535.1| LysR family transcription regulator protein ... 315 5e-84 >ref|YP_003773937.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ62029.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 294 Score = 535 bits (1378), Expect = e-150, Method: Composition-based stats. Identities = 276/290 (95%), Positives = 285/290 (98%) Query: 1 MIPPLTSLMAFEAIARRKSFNLAAAELHLTPSAISHQVARLEKLLGLRLFERSTKGVELT 60 MIPPLTSLMAFEAIARRKSFNLAAAELHLTPSAISHQVARLEKLLGLRLFERSTKGVELT Sbjct: 1 MIPPLTSLMAFEAIARRKSFNLAAAELHLTPSAISHQVARLEKLLGLRLFERSTKGVELT 60 Query: 61 PAGQSYLNRVAGALGAINSATDDLRHGVENSLQIHSSPSFASLWLMPRIGRFTQRYPEIA 120 PAGQSYLNRVAGALGAINSATDDLRHGVENSLQIHSSPSFASLWLMPRIGRFTQR+P+IA Sbjct: 61 PAGQSYLNRVAGALGAINSATDDLRHGVENSLQIHSSPSFASLWLMPRIGRFTQRHPDIA 120 Query: 121 FGLSASPEISDFEIGQVDLDIRCGVPHWPDLEIEPVLSEQVIPMASPDFLARHRIETPED 180 GLSASPEISDFEIGQVDLDIRCGVPHWPDLEIE VLSE+VIPMASPDFLARHRI+TP+D Sbjct: 121 LGLSASPEISDFEIGQVDLDIRCGVPHWPDLEIEAVLSERVIPMASPDFLARHRIDTPDD 180 Query: 181 LVLAPLIQSRGSLLQWPEWFARYAPDLRPERVALRFDRAMMSIEAAVQGLGVVFESDAFG 240 LVLAPLIQSRGSLLQWPEWFARYAPDLRPER+ALRFDRAMMSIEAAVQGLGVVFESDAFG Sbjct: 181 LVLAPLIQSRGSLLQWPEWFARYAPDLRPERIALRFDRAMMSIEAAVQGLGVVFESDAFG 240 Query: 241 AAHLASGRLQPVFADGMTLEITQHFAVCPARNKSRPEVVLFLQWLREESG 290 A LASGRLQPVFADG+ LEITQH+AVCPARNKSRPEV+LFLQWLREESG Sbjct: 241 AVALASGRLQPVFADGLALEITQHYAVCPARNKSRPEVMLFLQWLREESG 290 >ref|YP_004126996.1| lysr substrate-binding protein [Alicycliphilus denitrificans BC] ref|YP_004388441.1| LysR family transcriptional regulator [Alicycliphilus denitrificans K601] gb|ADV00109.1| LysR substrate-binding protein [Alicycliphilus denitrificans BC] gb|AEB84925.1| transcriptional regulator, LysR family [Alicycliphilus denitrificans K601] Length = 292 Score = 385 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 193/289 (66%), Positives = 238/289 (82%) Query: 1 MIPPLTSLMAFEAIARRKSFNLAAAELHLTPSAISHQVARLEKLLGLRLFERSTKGVELT 60 MIPPL++L AFEA+ARR+SF+LAA ELHLTPSAISHQ+A+LE LLG+RLFERS++GV+LT Sbjct: 1 MIPPLSALQAFEAVARRRSFSLAATELHLTPSAISHQLAKLENLLGVRLFERSSRGVDLT 60 Query: 61 PAGQSYLNRVAGALGAINSATDDLRHGVENSLQIHSSPSFASLWLMPRIGRFTQRYPEIA 120 PAG SYL RV ALGAI++ATD LRHGV++SL +H SPSFASLWLMPRI RF QR P I+ Sbjct: 61 PAGHSYLQRVGNALGAISTATDALRHGVQDSLYLHCSPSFASLWLMPRIARFAQRNPGIS 120 Query: 121 FGLSASPEISDFEIGQVDLDIRCGVPHWPDLEIEPVLSEQVIPMASPDFLARHRIETPED 180 LSAS SDF++G VDLDIR G+P WP LE+EP+ SE+V+P+ASP+F+ RH + TP+D Sbjct: 121 LVLSASHVHSDFQLGLVDLDIRYGLPTWPHLEVEPIFSEKVLPLASPEFIRRHALHTPQD 180 Query: 181 LVLAPLIQSRGSLLQWPEWFARYAPDLRPERVALRFDRAMMSIEAAVQGLGVVFESDAFG 240 L+ PLIQS ++ QWPEWFAR+ P RPER+AL+FDRAMMS++AAVQ LGV ES G Sbjct: 181 LLQVPLIQSMINVAQWPEWFARFEPAHRPERIALKFDRAMMSLDAAVQSLGVALESACLG 240 Query: 241 AAHLASGRLQPVFADGMTLEITQHFAVCPARNKSRPEVVLFLQWLREES 289 AH+ASGRLQPVF D M+LE+ HF V PAR+ +RPEV +FL W+REE+ Sbjct: 241 QAHIASGRLQPVFGDEMSLEVQAHFLVYPARHAARPEVRMFLDWIREEA 289 >ref|YP_548299.1| LysR family transcriptional regulator [Polaromonas sp. JS666] gb|ABE43401.1| transcriptional regulator, LysR family [Polaromonas sp. JS666] Length = 303 Score = 349 bits (895), Expect = 3e-94, Method: Composition-based stats. Identities = 175/295 (59%), Positives = 226/295 (76%) Query: 1 MIPPLTSLMAFEAIARRKSFNLAAAELHLTPSAISHQVARLEKLLGLRLFERSTKGVELT 60 M+PPL SL+AFEAIARR+SF LAA+ELHLTPSA+SHQVARLE LG++LFERS++GV+L+ Sbjct: 1 MLPPLPSLVAFEAIARRRSFALAASELHLTPSAVSHQVARLEDFLGVKLFERSSRGVKLS 60 Query: 61 PAGQSYLNRVAGALGAINSATDDLRHGVENSLQIHSSPSFASLWLMPRIGRFTQRYPEIA 120 PAG++YL RV GALGA+++ATDD+R GV NSL +H+SPSFASLWLMPRIG+F Q YP ++ Sbjct: 61 PAGEAYLLRVGGALGALSAATDDVRQGVRNSLYVHASPSFASLWLMPRIGQFAQAYPGVS 120 Query: 121 FGLSASPEISDFEIGQVDLDIRCGVPHWPDLEIEPVLSEQVIPMASPDFLARHRIETPED 180 LSAS SDFE+GQVDLDIR G+P WP L ++P+ E ++P+AS F+ RH+I TP D Sbjct: 121 LFLSASHVHSDFELGQVDLDIRYGLPAWPQLVVKPIFREPIMPLASAAFIERHQIRTPAD 180 Query: 181 LVLAPLIQSRGSLLQWPEWFARYAPDLRPERVALRFDRAMMSIEAAVQGLGVVFESDAFG 240 L+ PLIQS ++QW +WFA Y P +PER ALRFDRA+M+++AAVQGLGV ES G Sbjct: 181 LLQVPLIQSTVGVVQWADWFALYHPAKKPERFALRFDRALMALDAAVQGLGVALESAVIG 240 Query: 241 AAHLASGRLQPVFADGMTLEITQHFAVCPARNKSRPEVVLFLQWLREESGKLAST 295 H+ +GRLQPVF + + HF V P R+ R EV FL+WL + +L+ + Sbjct: 241 GGHIEAGRLQPVFDPAWAIPVQAHFVVYPERHGYRSEVAQFLEWLGTQVNELSGS 295 >ref|YP_001793285.1| LysR family transcriptional regulator [Leptothrix cholodnii SP-6] gb|ACB36520.1| transcriptional regulator, LysR family [Leptothrix cholodnii SP-6] Length = 297 Score = 322 bits (824), Expect = 6e-86, Method: Composition-based stats. Identities = 163/294 (55%), Positives = 212/294 (72%) Query: 2 IPPLTSLMAFEAIARRKSFNLAAAELHLTPSAISHQVARLEKLLGLRLFERSTKGVELTP 61 IPP+T+L AFEA+ARR+SF LAAAELHLT SAISHQV RLE LG+RLFERS GV ++P Sbjct: 4 IPPITNLQAFEAVARRRSFALAAAELHLTASAISHQVTRLEAHLGVRLFERSAHGVRISP 63 Query: 62 AGQSYLNRVAGALGAINSATDDLRHGVENSLQIHSSPSFASLWLMPRIGRFTQRYPEIAF 121 AG+SYL+R+ AL AI +AT+DLR GV NSL +HS+PS ASLWLM R+ F Q YP+I+ Sbjct: 64 AGESYLSRIGRALSAIAAATEDLRQGVRNSLYVHSAPSIASLWLMARLQGFAQAYPDISL 123 Query: 122 GLSASPEISDFEIGQVDLDIRCGVPHWPDLEIEPVLSEQVIPMASPDFLARHRIETPEDL 181 LS++ SDFE+GQ D+DIR GVP+WPDL +EP+ E ++P+ASP+F+ HR++ PE L Sbjct: 124 NLSSAHTPSDFELGQSDIDIRYGVPNWPDLVVEPLFEESIVPLASPEFIREHRLKRPEHL 183 Query: 182 VLAPLIQSRGSLLQWPEWFARYAPDLRPERVALRFDRAMMSIEAAVQGLGVVFESDAFGA 241 + LIQS S++QW +WF+ + PER ++RFDRA MS++AA QGLGV ES Sbjct: 184 LGVKLIQSNVSVVQWADWFSAFTDQHAPERFSVRFDRAQMSLDAATQGLGVALESTTIAG 243 Query: 242 AHLASGRLQPVFADGMTLEITQHFAVCPARNKSRPEVVLFLQWLREESGKLAST 295 H+A RL+PVF +++ HFAV P R+ RP V FL WL E+ K +T Sbjct: 244 RHIAERRLRPVFGLDKAIKVKAHFAVYPPRHAKRPAVEAFLAWLHGEAAKGQAT 297 >ref|YP_003774535.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ62627.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 295 Score = 315 bits (807), Expect = 5e-84, Method: Composition-based stats. Identities = 156/289 (53%), Positives = 210/289 (72%) Query: 1 MIPPLTSLMAFEAIARRKSFNLAAAELHLTPSAISHQVARLEKLLGLRLFERSTKGVELT 60 ++PPL +L AFEA+ARRKSF LAAAELHLT SA+SHQVARLE LG+RLFERS GV +T Sbjct: 3 VLPPLPNLQAFEAVARRKSFALAAAELHLTASAVSHQVARLESYLGIRLFERSAHGVRIT 62 Query: 61 PAGQSYLNRVAGALGAINSATDDLRHGVENSLQIHSSPSFASLWLMPRIGRFTQRYPEIA 120 AG++YL R+ GA+ AI +A+ D+R GV N+L IHS+PS ASLWLM R+ F + YPEI Sbjct: 63 TAGEAYLARIQGAISAITAASMDVRQGVSNTLYIHSAPSIASLWLMARLNDFARSYPEIT 122 Query: 121 FGLSASPEISDFEIGQVDLDIRCGVPHWPDLEIEPVLSEQVIPMASPDFLARHRIETPED 180 F LSA+ S+FE+G+VD+DIR G+P+WP L +EP+ E+++P+ASP F+ +R+ P D Sbjct: 123 FNLSAAHSQSNFELGEVDIDIRYGIPNWPGLVVEPLFEERIVPLASPAFIREYRLRKPAD 182 Query: 181 LVLAPLIQSRGSLLQWPEWFARYAPDLRPERVALRFDRAMMSIEAAVQGLGVVFESDAFG 240 L+ LI+S S++QW +WF +A PE+ A+RFDRA MS++AA QGLGV ES Sbjct: 183 LLGVKLIRSNVSVVQWADWFGEFADVRAPEQFAVRFDRAQMSLDAATQGLGVALESATVA 242 Query: 241 AAHLASGRLQPVFADGMTLEITQHFAVCPARNKSRPEVVLFLQWLREES 289 A HL +L+P+F +++ HFAV PA + RP V FL+WLRE++ Sbjct: 243 ARHLEEKKLKPIFGLERAIKVKAHFAVYPAHHARRPAVAAFLEWLREQA 291