BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0536.p (345 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773939.1| TRAP-type C4-dicarboxylate transport system ... 621 e-176 ref|YP_003774533.1| TRAP-type C4-dicarboxylate transport system ... 606 e-171 ref|NP_768810.1| ABC transporter substrate-binding protein [Brad... 462 e-128 ref|YP_001889841.1| TRAP dicarboxylate transporter DctP subunit ... 454 e-125 ref|YP_001239281.1| putative TRAP-type C4-dicarboxylate transpor... 438 e-121 >ref|YP_003773939.1| TRAP-type C4-dicarboxylate transport system periplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ62031.1| TRAP-type C4-dicarboxylate transport system, periplasmic component protein [Herbaspirillum seropedicae SmR1] Length = 345 Score = 621 bits (1601), Expect = e-176, Method: Composition-based stats. Identities = 308/345 (89%), Positives = 332/345 (96%) Query: 1 MKDEIASKKLSRRQILKAGAVGAALPLFSILTRPANAAEFTYKFATGQDPSHPVNKRAQE 60 M DE A K+++RR +LKAGAVGAALPLFSIL+RPA+AAEF+YKFATGQDPSHPVNKRAQE Sbjct: 1 MNDERAKKQVTRRNMLKAGAVGAALPLFSILSRPASAAEFSYKFATGQDPSHPVNKRAQE 60 Query: 61 AIDRIRNATNGRMEIKLFPANQLGSDTDLMSQIRNGGVEFFNQANTVLSTLVPAAGIVNT 120 AIDRIRNATNGR+EIKLFPANQLGSDTDLMSQ+RNGGVEFFNQANTVLSTLVPAAGIVNT Sbjct: 61 AIDRIRNATNGRLEIKLFPANQLGSDTDLMSQVRNGGVEFFNQANTVLSTLVPAAGIVNT 120 Query: 121 GFAFHDYKEVWQAMDGPLGAYVRAQIEKVGLLTMSKPWDNGFRQITTSTKAIRSAADVKG 180 GFAFHDY VW+AMDGPLGA+VRAQIEKVGLLTMSKPWDNGFRQITTSTK +R+A DVKG Sbjct: 121 GFAFHDYGAVWKAMDGPLGAHVRAQIEKVGLLTMSKPWDNGFRQITTSTKPVRNAGDVKG 180 Query: 181 LKLRVPAAPMLTSLFSALGASPTPINFNEVYSSLQTKLVEGQENPLAIISTARLYEVQKF 240 LKLRVPAAPMLTSLFSALGASPTPINFNEVYSSLQTKLVEGQENPLAIISTARLYEVQKF Sbjct: 181 LKLRVPAAPMLTSLFSALGASPTPINFNEVYSSLQTKLVEGQENPLAIISTARLYEVQKF 240 Query: 241 CTLSNHVWDAYWILGNRRAFDKLPKDIQEIVRRELDQAATDERADIASFSGMARNDLAGK 300 CT+SNHVWDAYWILGNRRAF+KLPKDIQEIVRRELD+AA+DERADIA+FSG ARNDLA K Sbjct: 241 CTISNHVWDAYWILGNRRAFEKLPKDIQEIVRRELDKAASDERADIAAFSGFARNDLASK 300 Query: 301 GLQIIDADKDSFKQALAQANFYKDMRARFGEEAWKLLESSVGTRG 345 GLQI++ADKDSFK+ALA+ANFYKDMRA+FGE+AWKLLE SVG G Sbjct: 301 GLQIVEADKDSFKEALARANFYKDMRAKFGEDAWKLLEGSVGALG 345 >ref|YP_003774533.1| TRAP-type C4-dicarboxylate transport system periplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ62625.1| TRAP-type C4-dicarboxylate transport system, periplasmic component protein [Herbaspirillum seropedicae SmR1] Length = 348 Score = 606 bits (1563), Expect = e-171, Method: Composition-based stats. Identities = 299/336 (88%), Positives = 326/336 (97%) Query: 10 LSRRQILKAGAVGAALPLFSILTRPANAAEFTYKFATGQDPSHPVNKRAQEAIDRIRNAT 69 +SRRQ+LKAGAVGAALPLFSI++RPANAAEF YKFATGQDPSHPVNKRAQ+AIDRIR AT Sbjct: 13 VSRRQLLKAGAVGAALPLFSIMSRPANAAEFNYKFATGQDPSHPVNKRAQQAIDRIREAT 72 Query: 70 NGRMEIKLFPANQLGSDTDLMSQIRNGGVEFFNQANTVLSTLVPAAGIVNTGFAFHDYKE 129 GR++IKLFPANQLGSDTDLMSQIRNGGVEFFNQA+ VLSTLVPAAGIVNTGFAFHDYKE Sbjct: 73 GGRLDIKLFPANQLGSDTDLMSQIRNGGVEFFNQASVVLSTLVPAAGIVNTGFAFHDYKE 132 Query: 130 VWQAMDGPLGAYVRAQIEKVGLLTMSKPWDNGFRQITTSTKAIRSAADVKGLKLRVPAAP 189 VWQAMDGPLGAYVRAQIEKVGLLTMSKPWDNGFRQITTSTK I++AAD+KGLKLRVPAAP Sbjct: 133 VWQAMDGPLGAYVRAQIEKVGLLTMSKPWDNGFRQITTSTKPIKTAADLKGLKLRVPAAP 192 Query: 190 MLTSLFSALGASPTPINFNEVYSSLQTKLVEGQENPLAIISTARLYEVQKFCTLSNHVWD 249 MLTSLFSALGASPTPINFNEVYSSLQTKLVEGQENPLAIISTARLYEVQKFCT+SNHVWD Sbjct: 193 MLTSLFSALGASPTPINFNEVYSSLQTKLVEGQENPLAIISTARLYEVQKFCTISNHVWD 252 Query: 250 AYWILGNRRAFDKLPKDIQEIVRRELDQAATDERADIASFSGMARNDLAGKGLQIIDADK 309 AYWILGNRRAF+KLPKDIQEIVRRELD+AATDERADIAS SG ARNDL GKG+QII+ADK Sbjct: 253 AYWILGNRRAFEKLPKDIQEIVRRELDKAATDERADIASLSGFARNDLQGKGVQIIEADK 312 Query: 310 DSFKQALAQANFYKDMRARFGEEAWKLLESSVGTRG 345 +SFK+ALA+ +FYKD+RA+FG++AWKLL++SVG+ G Sbjct: 313 NSFKEALARGSFYKDLRAKFGDDAWKLLQNSVGSLG 348 >ref|NP_768810.1| ABC transporter substrate-binding protein [Bradyrhizobium japonicum USDA 110] dbj|BAC47435.1| blr2170 [Bradyrhizobium japonicum USDA 110] Length = 355 Score = 462 bits (1188), Expect = e-128, Method: Composition-based stats. Identities = 225/348 (64%), Positives = 283/348 (81%), Gaps = 9/348 (2%) Query: 1 MKDE----IASK--KLSRRQILKAGAVGAALPLFSILTRPANAAEFTYKFATGQDPSHPV 54 MKD+ ASK +SRR +L A +PL ILTRPA+AAEF YKFATGQDP+HPV Sbjct: 8 MKDQEENMTASKPGSISRRSLLMAAT---TVPLCGILTRPASAAEFVYKFATGQDPTHPV 64 Query: 55 NKRAQEAIDRIRNATNGRMEIKLFPANQLGSDTDLMSQIRNGGVEFFNQANTVLSTLVPA 114 N RAQEAIDRIR AT+GR+EI+LFPANQLGSDT+L++Q+R+GGVEFFNQ++++L+TLVP+ Sbjct: 65 NIRAQEAIDRIREATSGRLEIRLFPANQLGSDTELLTQVRSGGVEFFNQSSSILATLVPS 124 Query: 115 AGIVNTGFAFHDYKEVWQAMDGPLGAYVRAQIEKVGLLTMSKPWDNGFRQITTSTKAIRS 174 AGIVNTGFAF DY VW+AMDG LG Y+RAQI K ++ +SK WDNGFRQ+T+S + +R+ Sbjct: 125 AGIVNTGFAFADYDSVWKAMDGDLGTYIRAQIAKTPIMAVSKAWDNGFRQVTSSGREVRT 184 Query: 175 AADVKGLKLRVPAAPMLTSLFSALGASPTPINFNEVYSSLQTKLVEGQENPLAIISTARL 234 D+K ++RVP AP+LTSLF ALGA PTPINFNEVYS+LQTK+V+GQENPL II+TARL Sbjct: 185 PDDLKNFQIRVPPAPLLTSLFKALGAGPTPINFNEVYSALQTKVVDGQENPLPIIATARL 244 Query: 235 YEVQKFCTLSNHVWDAYWILGNRRAFDKLPKDIQEIVRRELDQAATDERADIASFSGMAR 294 YEVQ C+L+ HVWD YWILGN+RAF++LPKD+QEIV RELD++A D+RADIA S R Sbjct: 245 YEVQSTCSLTGHVWDGYWILGNKRAFERLPKDVQEIVTRELDRSAVDQRADIAKLSQSLR 304 Query: 295 NDLAGKGLQIIDADKDSFKQALAQANFYKDMRARFGEEAWKLLESSVG 342 DL+ KGL+ ID D+ +F+QAL++ +FY D + +FGEEAW LE + G Sbjct: 305 ADLSTKGLKFIDVDRAAFRQALSKTSFYADWKGKFGEEAWSHLEKAAG 352 >ref|YP_001889841.1| TRAP dicarboxylate transporter DctP subunit [Burkholderia phytofirmans PsJN] gb|ACD20470.1| TRAP dicarboxylate transporter, DctP subunit [Burkholderia phytofirmans PsJN] Length = 347 Score = 454 bits (1168), Expect = e-125, Method: Composition-based stats. Identities = 220/341 (64%), Positives = 279/341 (81%), Gaps = 1/341 (0%) Query: 6 ASKKLSRRQILKAGA-VGAALPLFSILTRPANAAEFTYKFATGQDPSHPVNKRAQEAIDR 64 A + +SRR LKAGA + AA+PL+S+ R A EF+YK ATGQDP+HPVN RAQEAI+ Sbjct: 7 APQGISRRSFLKAGATLSAAVPLWSVSRRAMAAPEFSYKLATGQDPTHPVNIRAQEAINH 66 Query: 65 IRNATNGRMEIKLFPANQLGSDTDLMSQIRNGGVEFFNQANTVLSTLVPAAGIVNTGFAF 124 IR ATNGR++IKLFP NQLGSDTDL+SQ+RNGGVEFFNQA+++L+TL PAAGIVNTGFAF Sbjct: 67 IREATNGRLDIKLFPQNQLGSDTDLLSQVRNGGVEFFNQASSILATLTPAAGIVNTGFAF 126 Query: 125 HDYKEVWQAMDGPLGAYVRAQIEKVGLLTMSKPWDNGFRQITTSTKAIRSAADVKGLKLR 184 DY VW+AMDG LG Y+R QI K GL+++SK WDNGFRQI++ST+A+R+ AD+KG K+R Sbjct: 127 KDYDAVWKAMDGDLGNYIRGQIGKSGLVSVSKVWDNGFRQISSSTRALRAPADLKGFKIR 186 Query: 185 VPAAPMLTSLFSALGASPTPINFNEVYSSLQTKLVEGQENPLAIISTARLYEVQKFCTLS 244 VP APMLTSLF AL A P PINFNE+YS+LQT +VEGQENPL II+TA+LYEVQK+ +L+ Sbjct: 187 VPQAPMLTSLFKALDAGPAPINFNELYSALQTGVVEGQENPLPIIATAKLYEVQKYISLT 246 Query: 245 NHVWDAYWILGNRRAFDKLPKDIQEIVRRELDQAATDERADIASFSGMARNDLAGKGLQI 304 +HVWD YWILGNR A+++LP +++ IV RE ++AA +RADIA SG R+DL KG+ Sbjct: 247 SHVWDGYWILGNRAAWERLPAEMRTIVTREFEKAAMLQRADIAKLSGSLRDDLKAKGITF 306 Query: 305 IDADKDSFKQALAQANFYKDMRARFGEEAWKLLESSVGTRG 345 ID D++SF+ ALA+ +FY D ++++G+EAW LLE SVG G Sbjct: 307 IDVDRESFRAALAKTSFYHDWKSKYGDEAWGLLEKSVGKLG 347 >ref|YP_001239281.1| putative TRAP-type C4-dicarboxylate transport system periplasmic protein [Bradyrhizobium sp. BTAi1] gb|ABQ35375.1| putative TRAP-type C4-dicarboxylate transport system, periplasmic component [Bradyrhizobium sp. BTAi1] Length = 337 Score = 438 bits (1126), Expect = e-121, Method: Composition-based stats. Identities = 215/338 (63%), Positives = 268/338 (79%), Gaps = 3/338 (0%) Query: 8 KKLSRRQILKAGAVGAALPLFSILTRPANAAEFTYKFATGQDPSHPVNKRAQEAIDRIRN 67 K +RRQ++ A A ALP ++R A AAEFT K ATGQDPSHPVNKRA+EA DRI++ Sbjct: 3 KGTTRRQLITAAA---ALPFTFAISRYAKAAEFTMKLATGQDPSHPVNKRAREAADRIKD 59 Query: 68 ATNGRMEIKLFPANQLGSDTDLMSQIRNGGVEFFNQANTVLSTLVPAAGIVNTGFAFHDY 127 A+ GR+EI L+PANQLGSDTDL+SQ+R G V+ N A++VL+T VP AGIVNTGFAF Y Sbjct: 60 ASGGRLEINLYPANQLGSDTDLISQVRVGAVDAINIASSVLATRVPLAGIVNTGFAFSSY 119 Query: 128 KEVWQAMDGPLGAYVRAQIEKVGLLTMSKPWDNGFRQITTSTKAIRSAADVKGLKLRVPA 187 +VW+AMDG LG ++R IEK G + +SKPWDNGFRQ+T+ST+ IR+ D+K K+RVPA Sbjct: 120 DQVWKAMDGSLGDHIRKDIEKTGAIALSKPWDNGFRQVTSSTREIRTPDDLKSFKIRVPA 179 Query: 188 APMLTSLFSALGASPTPINFNEVYSSLQTKLVEGQENPLAIISTARLYEVQKFCTLSNHV 247 AP+LTSLF ALGA PTPINFNEVY+SLQTK+VEGQENPL II+TA+LYEVQK+C+L++HV Sbjct: 180 APILTSLFQALGAGPTPINFNEVYTSLQTKVVEGQENPLPIIATAKLYEVQKYCSLTSHV 239 Query: 248 WDAYWILGNRRAFDKLPKDIQEIVRRELDQAATDERADIASFSGMARNDLAGKGLQIIDA 307 WDAYWIL NR AF +LP D+Q IV RE + +A DERADIA+ S R DLA KG +D Sbjct: 240 WDAYWILCNRAAFTRLPADLQAIVTREFNASADDERADIAALSQSLRADLAAKGFTFVDV 299 Query: 308 DKDSFKQALAQANFYKDMRARFGEEAWKLLESSVGTRG 345 DK +F+ AL +++FYKD R +FGEEAW +L+S+VG G Sbjct: 300 DKTAFRAALGKSSFYKDWRGKFGEEAWTILQSNVGELG 337