BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0535.p (208 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773940.1| transmembrane protein [Herbaspirillum serope... 332 2e-89 ref|YP_004751152.1| hypothetical protein CFU_0492 [Collimonas fu... 258 5e-67 ref|YP_004715026.1| hypothetical protein PSTAB_2656 [Pseudomonas... 240 1e-61 ref|ZP_05133358.1| bicyclomycin/multidrug efflux system [Stenotr... 225 3e-57 ref|YP_001973876.1| putative transmembrane protein [Stenotrophom... 223 1e-56 >ref|YP_003773940.1| transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ62032.1| transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 208 Score = 332 bits (851), Expect = 2e-89, Method: Composition-based stats. Identities = 189/208 (90%), Positives = 199/208 (95%) Query: 1 MLLHTIYLIAICAEAISGALMGIRKDMDIFGICLIGTVAALGGGTVRDILIGHYPLGWVA 60 MLLHTIYLIAICAEAISGALMGIRKDMDIFG+CLIGTVAALGGGT+RDILIGHYPLGWVA Sbjct: 1 MLLHTIYLIAICAEAISGALMGIRKDMDIFGVCLIGTVAALGGGTMRDILIGHYPLGWVA 60 Query: 61 HPEYLGFTICAAIVAAVAARALHHFKSAFLVVDALGLVAFTIIGCDIARSFDNFHPAIVV 120 HPEYL FTICAA+VAAVAARALHHFKSAFLVVDALGLVAFT+IGCDIAR F +FHPAIVV Sbjct: 61 HPEYLAFTICAAVVAAVAARALHHFKSAFLVVDALGLVAFTVIGCDIARGFADFHPAIVV 120 Query: 121 MLGMVTGVFGGLLRDVLCNEIPLVLRREIYASVSLLTGTLYVLILHWQIDGRIATLSSLL 180 MLGMVTGVFGGLLRDVLCNEIPLVLRREIYASVSLLTG YV +LH Q+D RIAT+SSLL Sbjct: 121 MLGMVTGVFGGLLRDVLCNEIPLVLRREIYASVSLLTGATYVGVLHLQVDPRIATMSSLL 180 Query: 181 LGFSVRLLAIRFHWELPRMDKEHVRGFD 208 LGF+VRLLAIRFHWELPRMDK+ VRGFD Sbjct: 181 LGFAVRLLAIRFHWELPRMDKDRVRGFD 208 >ref|YP_004751152.1| hypothetical protein CFU_0492 [Collimonas fungivorans Ter331] gb|AEK60329.1| hypothetical protein CFU_0492 [Collimonas fungivorans Ter331] Length = 207 Score = 258 bits (658), Expect = 5e-67, Method: Composition-based stats. Identities = 136/208 (65%), Positives = 173/208 (83%), Gaps = 1/208 (0%) Query: 1 MLLHTIYLIAICAEAISGALMGIRKDMDIFGICLIGTVAALGGGTVRDILIGHYPLGWVA 60 MLLHTIYLIAI AEA+SGA+MG+R+DMD+FGIC++GT+ ALGGG++RDIL+G+YPLGW+A Sbjct: 1 MLLHTIYLIAIVAEAMSGAIMGMRRDMDLFGICVVGTITALGGGSMRDILLGNYPLGWIA 60 Query: 61 HPEYLGFTICAAIVAAVAARALHHFKSAFLVVDALGLVAFTIIGCDIARSFDNFHPAIVV 120 HPEYL FTI AA+V A+ AR LHH +S FLVVD LGLVAF++IGCD+AR+ P IV+ Sbjct: 61 HPEYLLFTIGAAVVTALVARFLHHLRSVFLVVDGLGLVAFSVIGCDVARA-AGMAPGIVI 119 Query: 121 MLGMVTGVFGGLLRDVLCNEIPLVLRREIYASVSLLTGTLYVLILHWQIDGRIATLSSLL 180 + GM+TGVFGGLLRDVLCNEIPLVL+RE+YA+++L TG LYV +L W +D A L ++ Sbjct: 120 LAGMITGVFGGLLRDVLCNEIPLVLQRELYATIALFTGALYVGLLWWDVDSSAAPLIAIG 179 Query: 181 LGFSVRLLAIRFHWELPRMDKEHVRGFD 208 GF VRLLA+RFHW+LP + +RGF+ Sbjct: 180 AGFLVRLLALRFHWKLPSFNGSGIRGFE 207 >ref|YP_004715026.1| hypothetical protein PSTAB_2656 [Pseudomonas stutzeri ATCC 17588 = LMG 11199] gb|AEA84674.1| conserved hypothetical protein [Pseudomonas stutzeri DSM 4166] gb|AEJ05937.1| hypothetical protein PSTAB_2656 [Pseudomonas stutzeri ATCC 17588 = LMG 11199] Length = 208 Score = 240 bits (612), Expect = 1e-61, Method: Composition-based stats. Identities = 126/207 (60%), Positives = 166/207 (80%), Gaps = 1/207 (0%) Query: 2 LLHTIYLIAICAEAISGALMGIRKDMDIFGICLIGTVAALGGGTVRDILIGHYPLGWVAH 61 LLHTIYLIAI AEA+SGA+MG+R+ MD+FGICL+GTV ALGGGT RD+L+GHYP+GW+AH Sbjct: 3 LLHTIYLIAITAEAMSGAIMGMRRGMDLFGICLLGTVTALGGGTARDVLLGHYPVGWIAH 62 Query: 62 PEYLGFTICAAIVAAVAARALHHFKSAFLVVDALGLVAFTIIGCDIARSFDNFHPAIVVM 121 PEYL FTI AAIV AR LHH + FL+VD LGLVAFT+IGCD+A HP+IVV+ Sbjct: 63 PEYLTFTIGAAIVTGFIARHLHHLRMVFLLVDGLGLVAFTVIGCDVAMGM-GAHPSIVVL 121 Query: 122 LGMVTGVFGGLLRDVLCNEIPLVLRREIYASVSLLTGTLYVLILHWQIDGRIATLSSLLL 181 G++TG+FGGL+RDVLCN++P+VL+RE+YA+V+L TG YV +L +I+ +ATL++L Sbjct: 122 AGVITGIFGGLMRDVLCNQVPMVLQRELYATVALFTGVFYVGMLWLEINTTLATLAALGS 181 Query: 182 GFSVRLLAIRFHWELPRMDKEHVRGFD 208 GF R+LA+ F W+LP + + +RG + Sbjct: 182 GFLFRVLAMTFSWKLPDFNGKDIRGLE 208 >ref|ZP_05133358.1| bicyclomycin/multidrug efflux system [Stenotrophomonas sp. SKA14] gb|EED37419.1| bicyclomycin/multidrug efflux system [Stenotrophomonas sp. SKA14] Length = 205 Score = 225 bits (574), Expect = 3e-57, Method: Composition-based stats. Identities = 117/198 (59%), Positives = 155/198 (78%), Gaps = 1/198 (0%) Query: 1 MLLHTIYLIAICAEAISGALMGIRKDMDIFGICLIGTVAALGGGTVRDILIGHYPLGWVA 60 MLL IYLIAI AEA++GAL R+ MD+FG+ +I V ALGGG++RDIL+GHYPLGWV Sbjct: 1 MLLSIIYLIAISAEAMTGALSAGRRRMDLFGVVMIACVTALGGGSLRDILLGHYPLGWVK 60 Query: 61 HPEYLGFTICAAIVAAVAARALHHFKSAFLVVDALGLVAFTIIGCDIARSFDNFHPAIVV 120 HPEYLGFT+CAA++A AR +HHF+ FLV+D LGL+AFT+IGC IAR + P IV+ Sbjct: 61 HPEYLGFTVCAALIATWVARWMHHFRRTFLVLDGLGLIAFTLIGCSIAREAGHATP-IVL 119 Query: 121 MLGMVTGVFGGLLRDVLCNEIPLVLRREIYASVSLLTGTLYVLILHWQIDGRIATLSSLL 180 + GM+TG FGG+LRD+LCNE+PL+ ++E+YA +SLLTG +Y+L+LHW + A L L Sbjct: 120 IAGMLTGAFGGVLRDILCNEVPLIFQKELYAIISLLTGAVYLLLLHWGVADATAILCCLG 179 Query: 181 LGFSVRLLAIRFHWELPR 198 GF++RLLAI + WE+P+ Sbjct: 180 GGFALRLLAIHYRWEMPK 197 >ref|YP_001973876.1| putative transmembrane protein [Stenotrophomonas maltophilia K279a] ref|YP_004794191.1| hypothetical protein BurJV3_3652 [Burkholderia sp. JV3] emb|CAQ47593.1| putative transmembrane protein [Stenotrophomonas maltophilia K279a] gb|AEM52965.1| Uncharacterized protein family UPF0126 [Burkholderia sp. JV3] Length = 205 Score = 223 bits (568), Expect = 1e-56, Method: Composition-based stats. Identities = 116/198 (58%), Positives = 154/198 (77%), Gaps = 1/198 (0%) Query: 1 MLLHTIYLIAICAEAISGALMGIRKDMDIFGICLIGTVAALGGGTVRDILIGHYPLGWVA 60 MLL IYLIAI AEA++GAL R+ MD+FG+ +I V ALGGG++RDIL+GHYPLGWV Sbjct: 1 MLLSIIYLIAISAEAMTGALSAGRRRMDLFGVVMIACVTALGGGSLRDILLGHYPLGWVK 60 Query: 61 HPEYLGFTICAAIVAAVAARALHHFKSAFLVVDALGLVAFTIIGCDIARSFDNFHPAIVV 120 HPEYLGFT+CAA++A AR +HHF+ FLV+D LGL+AFT+IGC IAR + P IV+ Sbjct: 61 HPEYLGFTVCAALIATWVARWMHHFRRTFLVLDGLGLIAFTLIGCSIAREAGHAMP-IVL 119 Query: 121 MLGMVTGVFGGLLRDVLCNEIPLVLRREIYASVSLLTGTLYVLILHWQIDGRIATLSSLL 180 + GM+TG FGG+LRD+LCNE+PL+ ++E+YA ++LLTG Y+L+LHW + A L L Sbjct: 120 IAGMLTGAFGGVLRDILCNEVPLIFQKELYAIIALLTGAAYLLLLHWGVADATAILCCLG 179 Query: 181 LGFSVRLLAIRFHWELPR 198 GF++RLLAI + WE+P+ Sbjct: 180 GGFALRLLAIHYRWEMPK 197