BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0531.p (550 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773941.1| aerotaxis sensor receptor transmembrane prot... 821 0.0 ref|YP_001352217.1| aerotaxis sensor receptor (chemotaxis transd... 537 e-150 ref|YP_003773881.1| aerotaxis sensor receptor transmembrane prot... 522 e-146 ref|YP_001098794.1| aerotaxis sensor receptor, senses cellular r... 506 e-141 ref|YP_546041.1| methyl-accepting chemotaxis sensory transducer ... 470 e-130 >ref|YP_003773941.1| aerotaxis sensor receptor transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ62033.1| aerotaxis sensor receptor (chemotaxis transducer) transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 554 Score = 821 bits (2121), Expect = 0.0, Method: Composition-based stats. Identities = 485/554 (87%), Positives = 515/554 (92%), Gaps = 4/554 (0%) Query: 1 MRTNLPITTNERLLEDGKSIVSKTDLQGNITYVNPYFVEISGFDEAELIGAPQNIVRHPE 60 MR NLPITT ERLLEDGKSIVSKTDLQGNI YVNPYF+EISGF+E ELIGAPQNIVRHPE Sbjct: 1 MRKNLPITTTERLLEDGKSIVSKTDLQGNILYVNPYFIEISGFEEEELIGAPQNIVRHPE 60 Query: 61 MPREAFADMWATLKEGLPWNGLVKNRCKNGDYYWVQANVTPVRENGRAVGYMSVRTRPSR 120 MPREAFADMWATLKEGLPWNGLVKNRCKNGDYYWVQANVTPVRENGRAVGYMSVRTRPSR Sbjct: 61 MPREAFADMWATLKEGLPWNGLVKNRCKNGDYYWVQANVTPVRENGRAVGYMSVRTRPSR 120 Query: 121 EQVQAADSAYRAFVGGQARGLRIRRGAVARTGFIGWLQGLRDLPLAKRLGWMMGVLTLMF 180 EQVQAA++AYR F GQARGLR+ RGAV RTG GWLQGLR+LP+A+RLGW MGVLTLMF Sbjct: 121 EQVQAAEAAYRKFSAGQARGLRVHRGAVVRTGLTGWLQGLRELPVARRLGWTMGVLTLMF 180 Query: 181 ILGGAVAGSAVQTAGGSPYAVWLGTLGGAALLLGSWAVLHASVVAPLQRAIKSVHGLAGG 240 ILGGAVAG+AV +AGGSP+AVWLGT GA +LL SWA+LHAS+VAPLQRAIK+VHGLAGG Sbjct: 181 ILGGAVAGNAVMSAGGSPFAVWLGTAAGALMLLASWAMLHASIVAPLQRAIKAVHGLAGG 240 Query: 241 DLDLHIDTDARGDMGLLLQALQQLNVNLRAIIGDVRRNVESMTISTGEIASGNMDLSSRT 300 DLD HIDT ARGDMGLLLQALQQLNVNLRAIIGDVRRNVESMTISTGEIA+GNMDLS RT Sbjct: 241 DLDSHIDTTARGDMGLLLQALQQLNVNLRAIIGDVRRNVESMTISTGEIANGNMDLSGRT 300 Query: 301 ESQASALEETASSVEQFAATVRQNADSAANADRQAQSASSIAQRGSHSVQRMGKTMEEID 360 E+QASALEETASSVE+FAATVRQNADSAANADRQAQSAS+IAQRG SVQRMG+TMEEID Sbjct: 301 EAQASALEETASSVEEFAATVRQNADSAANADRQAQSASAIAQRGGSSVQRMGRTMEEID 360 Query: 361 AASHKIVDIIGLIDGISFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAK 420 AASHKIVDIIGLIDGISFQTNILALNAAVEAARAGEQGRGFAVVA+EVRTLAQRSAAAAK Sbjct: 361 AASHKIVDIIGLIDGISFQTNILALNAAVEAARAGEQGRGFAVVAAEVRTLAQRSAAAAK 420 Query: 421 DIKGLIDDSRAKVESGNQLVRETAQAMGDLGGAVENMAVTMAEITVASNEQSGGIEQLNQ 480 DIKGLIDDSRAKVESGNQLVRETAQAMG+LGGAVENMAVTMAEITVASNEQSGGIEQLNQ Sbjct: 421 DIKGLIDDSRAKVESGNQLVRETAQAMGELGGAVENMAVTMAEITVASNEQSGGIEQLNQ 480 Query: 481 AVNAIDETTQQNAALVEQAAAAAENLRDQSIKLSQAMSVFKISYSAPR----SPASASAN 536 AVNAIDETTQQNAALVEQAAAAAENLRDQ++KLSQA+SVFKISY+ R +P ++ A Sbjct: 481 AVNAIDETTQQNAALVEQAAAAAENLRDQAVKLSQAVSVFKISYAVSRAANVAPDTSVAL 540 Query: 537 TATRQKETTLALAQ 550 Q LALA+ Sbjct: 541 PPASQGPRKLALAR 554 >ref|YP_001352217.1| aerotaxis sensor receptor (chemotaxis transducer) transmembrane protein [Janthinobacterium sp. Marseille] gb|ABR89860.1| aerotaxis sensor receptor (chemotaxis transducer) transmembrane protein [Janthinobacterium sp. Marseille] Length = 555 Score = 537 bits (1384), Expect = e-150, Method: Composition-based stats. Identities = 316/521 (60%), Positives = 392/521 (75%), Gaps = 1/521 (0%) Query: 1 MRTNLPITTNERLLEDGKSIVSKTDLQGNITYVNPYFVEISGFDEAELIGAPQNIVRHPE 60 MRTNLP+T+NE L+DG S+VSKTD +G ITYVNP F+E SGF E ELIG P N++RHP+ Sbjct: 1 MRTNLPVTSNEYFLQDGSSLVSKTDTKGRITYVNPAFMEASGFQEEELIGKPHNLIRHPD 60 Query: 61 MPREAFADMWATLKEGLPWNGLVKNRCKNGDYYWVQANVTPVRENGRAVGYMSVRTRPSR 120 MP EAF DMW TLKEGLPW GLVKNR KNGD+YWV ANVTPVREN V +MSVR++P+R Sbjct: 61 MPEEAFGDMWQTLKEGLPWTGLVKNRRKNGDFYWVNANVTPVRENNEIVAFMSVRSKPNR 120 Query: 121 EQVQAADSAYRAFVGGQARGLRIRRGAVARTGFIGWLQGLRDLPLAKRLGWMMGVLTLMF 180 EQV+ AD+ Y F QA+GL IRRGAV TG G L LRD+ L ++ M L + Sbjct: 121 EQVEGADAIYARFKADQAKGLAIRRGAVVSTGIFGKLAALRDIGLGSKIALGMMTLIALI 180 Query: 181 ILGGAVAGSAVQTAGGSPYAVWLGTLGGAALLLGSWAVLHASVVAPLQRAIKSVHGLAGG 240 G VA +AV+ A + T G + L WA LHASVV PL+ I +AGG Sbjct: 181 AALGFVATTAVENAARMGWYAG-ATAAGVCVALLLWASLHASVVRPLRTLIAETRVIAGG 239 Query: 241 DLDLHIDTDARGDMGLLLQALQQLNVNLRAIIGDVRRNVESMTISTGEIASGNMDLSSRT 300 DL D DMG L QALQQ+NVNLR+++GD+R NV+S+TI+T EIA+GNMDLS RT Sbjct: 240 DLTFDFAVDRHDDMGQLQQALQQMNVNLRSVMGDIRTNVDSITIATREIAAGNMDLSGRT 299 Query: 301 ESQASALEETASSVEQFAATVRQNADSAANADRQAQSASSIAQRGSHSVQRMGKTMEEID 360 ESQAS+LEETASS+EQFA+TV+QNADSA+ A+ QSAS +A +G V+++G TM+EI Sbjct: 300 ESQASSLEETASSMEQFASTVKQNADSASQANELVQSASEVAGKGGAVVEKVGATMDEIS 359 Query: 361 AASHKIVDIIGLIDGISFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAK 420 A++ KIVDII LIDGI+FQTNILALNAAVEAARAGEQG+GFAVVASEVR+LAQRSA+AAK Sbjct: 360 ASAKKIVDIISLIDGIAFQTNILALNAAVEAARAGEQGKGFAVVASEVRSLAQRSASAAK 419 Query: 421 DIKGLIDDSRAKVESGNQLVRETAQAMGDLGGAVENMAVTMAEITVASNEQSGGIEQLNQ 480 +IKGLIDDS KV++GN+LV + M D+ +V+ + M EITVAS EQS GI+Q+N Sbjct: 420 EIKGLIDDSVEKVDAGNRLVSDAMTTMDDIVSSVQRVTGIMNEITVASREQSNGIDQVNL 479 Query: 481 AVNAIDETTQQNAALVEQAAAAAENLRDQSIKLSQAMSVFK 521 A++ +DE TQQNAALVE+AAAAA +L +Q+ L+Q++SVF+ Sbjct: 480 AISQMDEVTQQNAALVEEAAAAAASLEEQTFHLTQSISVFR 520 >ref|YP_003773881.1| aerotaxis sensor receptor transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ61973.1| aerotaxis sensor receptor transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 520 Score = 522 bits (1344), Expect = e-146, Method: Composition-based stats. Identities = 304/525 (57%), Positives = 390/525 (74%), Gaps = 9/525 (1%) Query: 1 MRTNLPITTNERLLEDGKSIVSKTDLQGNITYVNPYFVEISGFDEAELIGAPQNIVRHPE 60 MR N+P+T ERLL DGK+IVSKTDL+GNITYVNPYF+EISGF+E EL+GAPQN++RHP+ Sbjct: 1 MRMNMPVTGQERLLIDGKAIVSKTDLKGNITYVNPYFIEISGFEENELLGAPQNLIRHPD 60 Query: 61 MPREAFADMWATLKEGLPWNGLVKNRCKNGDYYWVQANVTPVRENGRAVGYMSVRTRPSR 120 MP EAFADMWAT+K G PW GLVKNR KNGD+YWV+ANVTP+RENG+ VGYMSVRT+P R Sbjct: 61 MPAEAFADMWATIKGGTPWTGLVKNRSKNGDHYWVRANVTPIRENGQIVGYMSVRTKPER 120 Query: 121 EQVQAADSAYRAFVGGQARGLRIRRGAVARTGFIGWLQGLRDLPLAKRLGWMMGVLTLMF 180 + V A+ Y + GQA+G+ + RG V RTG GWL L + L RL MG++ L Sbjct: 121 DAVAGAEKLYASIRRGQAKGIALHRGEVVRTGLAGWLGKLSRMQLNSRLNLSMGIM-LAI 179 Query: 181 ILGGAVAGSAVQTAGGSPYAVWLGTLGGAALLLG--SWAVLHASVVAPLQRAIKSVHGLA 238 L VAG A + + W+ L AA LL W L +++ PL +A+ H + Sbjct: 180 QLAVVVAGMA------ALHQWWISALAAAAALLSIVQWIALRNALIKPLHQALDITHAIT 233 Query: 239 GGDLDLHIDTDARGDMGLLLQALQQLNVNLRAIIGDVRRNVESMTISTGEIASGNMDLSS 298 GGDL + I+T ++G LL++L+Q+NVNL AIIGDVR NVE++T++T EIASGN+DLS Sbjct: 234 GGDLSVRIETTRHDELGRLLRSLRQMNVNLTAIIGDVRSNVETITLATREIASGNLDLSR 293 Query: 299 RTESQASALEETASSVEQFAATVRQNADSAANADRQAQSASSIAQRGSHSVQRMGKTMEE 358 RTE+QA+ LEETASS+ + A+TVRQNAD A A+ A +AS+IA RG +V G TM E Sbjct: 294 RTEAQAANLEETASSMHELASTVRQNADHAVQANDLAGTASAIAMRGGDAVASTGTTMNE 353 Query: 359 IDAASHKIVDIIGLIDGISFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAA 418 I +SHKIVDII LID I+FQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSAAA Sbjct: 354 ISESSHKIVDIISLIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAA 413 Query: 419 AKDIKGLIDDSRAKVESGNQLVRETAQAMGDLGGAVENMAVTMAEITVASNEQSGGIEQL 478 AK+IK LID S KV+ GN+ V + M D+ +V+ ++ M EI A+ +QS GI Q+ Sbjct: 414 AKEIKELIDASVEKVDIGNRQVEQATSTMRDIVASVQRVSGIMGEIKEATQQQSAGINQV 473 Query: 479 NQAVNAIDETTQQNAALVEQAAAAAENLRDQSIKLSQAMSVFKIS 523 ++A+ +D +TQQNA+LVE+AAAAA +L++Q+++L QA+SVFK + Sbjct: 474 HEAITQMDASTQQNASLVEEAAAAAGSLQEQTVRLLQAISVFKFN 518 >ref|YP_001098794.1| aerotaxis sensor receptor, senses cellular redox state or proton motive force [Herminiimonas arsenicoxydans] emb|CAL60665.1| Aerotaxis receptor [Herminiimonas arsenicoxydans] Length = 553 Score = 506 bits (1302), Expect = e-141, Method: Composition-based stats. Identities = 297/533 (55%), Positives = 389/533 (72%), Gaps = 5/533 (0%) Query: 1 MRTNLPITTNERLLEDGKSIVSKTDLQGNITYVNPYFVEISGFDEAELIGAPQNIVRHPE 60 MRTNLP+T E +L D S+VSKTD +G I+YVNP F+E SGF E EL+G P N++RHP+ Sbjct: 1 MRTNLPVTNAEFILRDEMSLVSKTDTKGRISYVNPAFIEASGFTEEELLGKPHNLIRHPD 60 Query: 61 MPREAFADMWATLKEGLPWNGLVKNRCKNGDYYWVQANVTPVRENGRAVGYMSVRTRPSR 120 MP +AF DMW TL++GLPW G+VKNR KNGD+YWV ANVTPVRE + V YMSVR++PSR Sbjct: 61 MPEQAFGDMWQTLQQGLPWTGMVKNRRKNGDFYWVNANVTPVREEQKIVAYMSVRSKPSR 120 Query: 121 EQVQAADSAYRAFVGGQARGLRIRRGAVARTGFIGWLQGLRDLPLAKRLGWMMGVLTLMF 180 EQV A Y F G A+GL I+RG V +G G L L+++ L R+G M L + Sbjct: 121 EQVDATAKIYARFKAGTAKGLMIKRGEVVASGLFGKLASLKNIGLGARIGISMSALIALI 180 Query: 181 ILGGAVAGSAVQTAGGSPYAVWLG--TLGGAALLLGSWAVLHASVVAPLQRAIKSVHGLA 238 + G A +AV+ A ++ W G T+ GA +++ +WA L+ S++ PL R I +A Sbjct: 181 MTLGFAAATAVENAA---WSYWYGAATIVGAVIVILTWAGLYFSIMRPLDRLISKTRVIA 237 Query: 239 GGDLDLHIDTDARGDMGLLLQALQQLNVNLRAIIGDVRRNVESMTISTGEIASGNMDLSS 298 GGD + D D DMG L QALQQ+NVNLR+++GD+R+NV+S+TI+T EIA GNMDLS Sbjct: 238 GGDFTANFDVDRHDDMGQLQQALQQMNVNLRSVMGDIRQNVDSITIATHEIAEGNMDLSR 297 Query: 299 RTESQASALEETASSVEQFAATVRQNADSAANADRQAQSASSIAQRGSHSVQRMGKTMEE 358 RTE+QAS+LEETASS++QFA+TV+QNAD+A A+R SAS +A +G V+++G TM E Sbjct: 298 RTEAQASSLEETASSMQQFASTVKQNADNAQQANRLVLSASEVAGKGGAVVEKVGATMNE 357 Query: 359 IDAASHKIVDIIGLIDGISFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAA 418 I A++ +IVDII LIDGI+FQTNILALNAAVEAARAGEQG+GFAVVA EVR+LAQRSA A Sbjct: 358 ISASAKRIVDIISLIDGIAFQTNILALNAAVEAARAGEQGKGFAVVAGEVRSLAQRSANA 417 Query: 419 AKDIKGLIDDSRAKVESGNQLVRETAQAMGDLGGAVENMAVTMAEITVASNEQSGGIEQL 478 A++IK LIDDS KV GN+LV + M + +V+++ M EIT AS EQS GIEQ+ Sbjct: 418 AREIKHLIDDSVDKVGVGNRLVGDAMATMEGIVNSVKSVTDIMNEITQASREQSDGIEQV 477 Query: 479 NQAVNAIDETTQQNAALVEQAAAAAENLRDQSIKLSQAMSVFKISYSAPRSPA 531 N A++ +D+ TQQNAALVE+AAAAA +L++Q+ LSQ++S+FK + A P Sbjct: 478 NLAISHMDQVTQQNAALVEEAAAAAASLKEQTEHLSQSISIFKTTGGATMVPG 530 >ref|YP_546041.1| methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor [Methylobacillus flagellatus KT] gb|ABE50200.1| methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor [Methylobacillus flagellatus KT] Length = 598 Score = 470 bits (1210), Expect = e-130, Method: Composition-based stats. Identities = 281/542 (51%), Positives = 364/542 (67%), Gaps = 12/542 (2%) Query: 1 MRTNLPITTNERLLEDGKSIVSKTDLQGNITYVNPYFVEISGFDEAELIGAPQNIVRHPE 60 MR N+P+T NE L+DG+SI+S TDLQG ITY+N F+E+SGF E ELIG+P N+VRHP+ Sbjct: 1 MRINMPVTNNEYFLQDGQSILSTTDLQGKITYINQDFIEVSGFTEDELIGSPHNLVRHPD 60 Query: 61 MPREAFADMWATLKEGLPWNGLVKNRCKNGDYYWVQANVTPVRENGRAVGYMSVRTRPSR 120 MP EAFADMWATLK GLPW G+VKNR KNGDYYWV AN TP+R+NG VGYMSVR +PSR Sbjct: 61 MPPEAFADMWATLKAGLPWTGMVKNRRKNGDYYWVLANATPMRQNGNVVGYMSVRVKPSR 120 Query: 121 EQVQAADSAYRAFVGGQARGLRIRRGAVARTGFIGWLQGLRDLPLAKRLGWMMGVLTLMF 180 +QV+ A Y + GL++ RG + +T FI ++ + L ++ +T + Sbjct: 121 QQVEQASQIYARLRENKHHGLKLHRGEILKTDFISRVRRAMQMTLKTQVA-----VTTIA 175 Query: 181 ILGGAVAGSAVQTAGGSPYAVWLGTLGGAALLLGSWAVLHASVVAPLQRAIKSVHGLAGG 240 IL V A G V G L +L L SV+ PL+ A + LA G Sbjct: 176 ILLAMVVVIAATFNGLDISFVVGGALVAMVAMLSLAVSLSNSVIKPLREATDIANALASG 235 Query: 241 DLDLHIDTDARGDMGLLLQALQQLNVNLRAIIGDVRRNVESMTISTGEIASGNMDLSSRT 300 DL + G+LL+AL Q+NVN+ A+I D+R N++ + EIA+GN DLS+RT Sbjct: 236 DLSHKFSASKTDETGMLLRALNQMNVNIVAMITDIRTNMQRINTGVNEIANGNNDLSART 295 Query: 301 ESQASALEETASSVEQFAATVRQNADSAANADRQAQSASSIAQRGSHSVQRMGKTMEEID 360 ESQAS+LEETASS+E+ A+TV+QNAD+A A++ SASS+A RG + + M I Sbjct: 296 ESQASSLEETASSMEELASTVKQNADNARQANQLVISASSVAARGGEVIGEVRDRMRLIS 355 Query: 361 AASHKIVDIIGLIDGISFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAK 420 +++KI DIIG+IDGI+FQTNILALNAAVEAARAGEQGRGFAVVASEVR LA RSAAAAK Sbjct: 356 ESANKISDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAHRSAAAAK 415 Query: 421 DIKGLIDDSRAKVESGNQLVRETAQAMGDLGGAVENMAVTMAEITVASNEQSGGIEQLNQ 480 +IKGLI DS +VE+G + V + M ++ +V N+ MAEI+ AS EQS GI+Q+N Sbjct: 416 EIKGLISDSVERVEAGVEFVDQAGTTMTEIVASVRNVTDIMAEISAASIEQSAGIDQVNH 475 Query: 481 AVNAIDETTQQNAALVEQAAAAAENLRDQSIKLSQAMSVFKISYSA-------PRSPASA 533 AVN +DE TQ+NAALVE++AAAA+ LR ++L +A SVFK+ PR+ A Sbjct: 476 AVNDMDEVTQRNAALVEESAAAADALRQDVLQLERAASVFKLGNGRDTPLERDPRAQAKE 535 Query: 534 SA 535 SA Sbjct: 536 SA 537