BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0526.p (501 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773944.1| SAM-dependent methyltransferase [Herbaspiril... 828 0.0 ref|YP_002297072.1| hypothetical protein RC1_0828 [Rhodospirillu... 494 e-137 ref|ZP_06369332.1| conserved hypothetical protein [Desulfovibrio... 469 e-130 ref|YP_611231.1| methyltransferase type 11 [Ruegeria sp. TM1040]... 453 e-125 ref|YP_004111546.1| methyltransferase regulatory domain-containi... 449 e-124 >ref|YP_003773944.1| SAM-dependent methyltransferase [Herbaspirillum seropedicae SmR1] gb|ADJ62036.1| SAM-dependent methyltransferase protein [Herbaspirillum seropedicae SmR1] Length = 525 Score = 828 bits (2138), Expect = 0.0, Method: Composition-based stats. Identities = 431/503 (85%), Positives = 465/503 (92%), Gaps = 3/503 (0%) Query: 1 MNPARLPLAFAFHGLQAPAIQTACELGFGQGLSTNFHAAASTTRWWGNDFNPLQAAFAQE 60 MNPARLPLAFAFHGLQAPA+QTACELGFGQGLS+N HAAASTTRWWGNDFNP QAAFAQE Sbjct: 22 MNPARLPLAFAFHGLQAPAVQTACELGFGQGLSSNIHAAASTTRWWGNDFNPRQAAFAQE 81 Query: 61 LAAASGSGAQLEDSSFSHFCRRDDLPDFDFIALHGIWSWVSEDNREIILDFIDRKLKPGG 120 LAAASGSGAQLEDSSFS FCRRDDLPDFDFIALHGIWSWVS++NR+II DFIDRKLKPGG Sbjct: 82 LAAASGSGAQLEDSSFSRFCRRDDLPDFDFIALHGIWSWVSQENRDIIFDFIDRKLKPGG 141 Query: 121 VLYLSYNTQPGWSAFMPLRDLLVQHTQLAGNEERGLPTAARIEAALAFATRLFETDPVYA 180 VLY+SYNTQPGWSAFMPLR+LLVQHTQ +GNEE+GLPTAARI+AALAFA RLFE DPVYA Sbjct: 142 VLYISYNTQPGWSAFMPLRELLVQHTQQSGNEEQGLPTAARIDAALAFAARLFEADPVYA 201 Query: 181 QTNPFMRDRLKMLQQQSRSYLAHEYFNRDWHAEPFAEIHRRFSQAGLQFACPAHYIDHLD 240 Q NPFMRDRLK+LQQQSRSYLAHEYFNRDWH E FA++HRRFS AGL+FACPAHY+DHLD Sbjct: 202 QANPFMRDRLKVLQQQSRSYLAHEYFNRDWHVESFADMHRRFSGAGLEFACPAHYVDHLD 261 Query: 241 MANLTPAQRQCLAEIDDPVLYQSTRDFMVNQTFRRDYWVRGGQVLDERQRVQALALQSVV 300 MANLTPAQRQ L EI DPVL QS RDFMVNQ FRRDYWVRG Q LD+RQRVQALALQSV+ Sbjct: 262 MANLTPAQRQQLYEITDPVLQQSVRDFMVNQQFRRDYWVRGAQALDDRQRVQALALQSVI 321 Query: 301 LLTEPDKVPLTIQNVAAEITLNRLIYEPILQALSDYQPHTLVDLAASLAHRNLNLSQVID 360 LLTEPDKVPLTIQNVA+EITLNRLIYEPILQALSDYQPHTLVDLAASLAHRNLNL+QV+D Sbjct: 322 LLTEPDKVPLTIQNVASEITLNRLIYEPILQALSDYQPHTLVDLAASLAHRNLNLAQVLD 381 Query: 361 SALMLIGTGHAAPLPPELDAATQAQIARRTADLNAYLLQRAALVLP---ESQEGDIAHLV 417 S LMLIGTGHAAPLP E DAAT+AQI RRT DLNA+LLQRAAL P + +EG+I HL Sbjct: 382 SVLMLIGTGHAAPLPAEPDAATRAQIERRTGDLNAWLLQRAALASPAGEQGEEGEITHLS 441 Query: 418 SPLTGGGVKVDRVEQLFLLAREVCGDDVEAWPAQAWQHIAAQGKRLVRDGVRLEAEDENL 477 SP+ GGGV+VDRVEQLFLLAR+ CGDDV+AWPAQ W++IAAQGKRL+R+GVRLE E ENL Sbjct: 442 SPVIGGGVRVDRVEQLFLLARQSCGDDVDAWPAQVWRYIAAQGKRLLREGVRLEGEAENL 501 Query: 478 AELATQARLFARTRLPLLRALQV 500 AELATQARLFARTRLPLL+AL V Sbjct: 502 AELATQARLFARTRLPLLKALGV 524 >ref|YP_002297072.1| hypothetical protein RC1_0828 [Rhodospirillum centenum SW] gb|ACI98259.1| conserved hypothetical protein [Rhodospirillum centenum SW] Length = 511 Score = 494 bits (1271), Expect = e-137, Method: Composition-based stats. Identities = 250/501 (49%), Positives = 337/501 (67%), Gaps = 13/501 (2%) Query: 1 MNPARLPLAFAFHGLQAPAIQTACELGFGQGLSTNFHAAASTTRWWGNDFNPLQAAFAQE 60 +NP R+ LAF GL P + TACELGFGQGLS HAA ST W G DFNP QAAFA + Sbjct: 22 LNPQRVGLAFLNRGLVFPEVTTACELGFGQGLSVAIHAAGSTAGWHGTDFNPAQAAFAGD 81 Query: 61 LAAASGSGAQLEDSSFSHFCRRDDLPDFDFIALHGIWSWVSEDNREIILDFIDRKLKPGG 120 L AASG+ A+L D +F+ FC R DLPDFDFI LHGIWSW+S+ NR +I+DF+ R+LK GG Sbjct: 82 LVAASGADARLRDDAFAEFCTRPDLPDFDFIGLHGIWSWISDANRAVIVDFVRRRLKVGG 141 Query: 121 VLYLSYNTQPGWSAFMPLRDLLVQHTQLAGNEERGLPTAARIEAALAFATRLFETDPVYA 180 VLY+SYNT PGW+AF P+R L+ H L G E RG+ R++ A+ FA +L T+P+++ Sbjct: 142 VLYISYNTLPGWAAFAPMRHLMTGHADLLGAEGRGI--VNRVDGAIDFAEKLLATNPLFS 199 Query: 181 QTNPFMRDRLKMLQQQSRSYLAHEYFNRDWHAEPFAEIHRRFSQAGLQFACPAHYIDHLD 240 + NP + +RLK +++Q+R YLAHEYFNRDWH FA + A L +AC AHY+DHLD Sbjct: 200 RANPLVGERLKKMKEQNRHYLAHEYFNRDWHPMHFATMADWLDGAKLDYACSAHYLDHLD 259 Query: 241 MANLTPAQRQCLAEIDDPVLYQSTRDFMVNQTFRRDYWVRGGQVLDERQRVQALALQSVV 300 NLTPAQ+ LAE+ DP+ ++ RDFMVNQ FRRDYWV+G + + +RV+AL + V+ Sbjct: 260 AVNLTPAQQTFLAEVPDPMFRETVRDFMVNQQFRRDYWVKGARRMSPLERVEALKTRRVM 319 Query: 301 LLTEPDKVPLTIQNVAAEITLNRLIYEPILQALSDYQPHTLVDLAASLAHRNLNLSQVID 360 L T D+V + I E +LN +Y P+L L+D +PH+L + SL + L+ +Q+++ Sbjct: 320 LATARDQVSMKIAGALGEASLNDAVYGPVLDLLADLRPHSLGQMEQSLRGKGLSFNQIVE 379 Query: 361 SALMLIGTGHAAPLPPELDAATQAQIARRTADLNAYLLQRAALVLPESQEGDIAHLVSPL 420 + L+L G GH L D A A++ R+T LNA+L +A GDIA+L SP+ Sbjct: 380 ACLVLTGVGH---LYAVHDDAVAAKVRRQTDRLNAHLCGKA------RSGGDIAYLASPV 430 Query: 421 TGGGVKVDRVEQLFLLAREVCGDDVEA-WPAQAWQHIAAQGKRLVRDGVRLEAEDENLAE 479 TGGG+ VDR++QLF +A V G A W W+ +++QG++LV++G LE + NLAE Sbjct: 431 TGGGIIVDRIQQLF-VASIVQGRKQPADWAGDVWKTLSSQGQKLVKEGKPLETAEANLAE 489 Query: 480 LATQARLFARTRLPLLRALQV 500 L QAR FA RLP LRALQ+ Sbjct: 490 LTAQARTFADRRLPALRALQI 510 >ref|ZP_06369332.1| conserved hypothetical protein [Desulfovibrio sp. FW1012B] gb|EFC20592.1| conserved hypothetical protein [Desulfovibrio sp. FW1012B] Length = 511 Score = 469 bits (1207), Expect = e-130, Method: Composition-based stats. Identities = 238/501 (47%), Positives = 327/501 (65%), Gaps = 11/501 (2%) Query: 1 MNPARLPLAFAFHGLQAPAIQTACELGFGQGLSTNFHAAASTTRWWGNDFNPLQAAFAQE 60 +NP R+ LAF GL+ P TACELGFGQGLS N HA A+ T+W G DFNP QA FA+E Sbjct: 22 LNPLRVKLAFLNAGLRFPETGTACELGFGQGLSVNIHATAAVTQWHGTDFNPSQAGFARE 81 Query: 61 LAAASGSGAQLEDSSFSHFCRRDDLPDFDFIALHGIWSWVSEDNREIILDFIDRKLKPGG 120 LA ASG GA+L D +F+ F + DLPDFDFI +HGIWSW+S+ NR +I+DF+ RKLK GG Sbjct: 82 LATASGGGARLYDDAFADFATKPDLPDFDFIGVHGIWSWISDANRAVIVDFVRRKLKVGG 141 Query: 121 VLYLSYNTQPGWSAFMPLRDLLVQHTQLAGNEERGLPTAARIEAALAFATRLFETDPVYA 180 VLY+SYNT PGW+AF P+R L+ +H + G + +G+ RIE AL F +L +P++A Sbjct: 142 VLYISYNTLPGWAAFAPMRHLMTEHATMMGCQGQGI--VPRIEGALDFCDKLLAVEPLFA 199 Query: 181 QTNPFMRDRLKMLQQQSRSYLAHEYFNRDWHAEPFAEIHRRFSQAGLQFACPAHYIDHLD 240 + NP + +R K L +Q+R YLAHEYFNRDW F + S A L +AC AHY+DH+D Sbjct: 200 KANPQIGERFKKLAEQNRHYLAHEYFNRDWEPMHFRTMAEWLSPAKLDYACSAHYLDHVD 259 Query: 241 MANLTPAQRQCLAEIDDPVLYQSTRDFMVNQTFRRDYWVRGGQVLDERQRVQALALQSVV 300 NLT AQ+ L I D + +S RDFMVNQ FRRDYWV+G + L+ ++ + L Q VV Sbjct: 260 ALNLTAAQQAFLQGIPDRLFRESVRDFMVNQQFRRDYWVKGARRLNALEQAETLRQQRVV 319 Query: 301 LLTEPDKVPLTIQNVAAEITLNRLIYEPILQALSDYQPHTLVDLAASLAHRNLNLSQVID 360 LLT V L + E +LN IY PIL AL+D++P T+ + ++A ++LN +Q++ Sbjct: 320 LLTHRADVSLKVAGALGEASLNETIYAPILDALADHKPKTIGQIEQAVAGKDLNFAQLMQ 379 Query: 361 SALMLIGTGHAAPLPPELDAATQAQIARRTADLNAYLLQRAALVLPESQEGDIAHLVSPL 420 + ++L G+G A D AT + ++T LNA+L+Q++ D+++L SP+ Sbjct: 380 AVMVLAGSGQIAAAQ---DEATIGKARKQTDKLNAHLMQKS------RGSTDVSYLASPV 430 Query: 421 TGGGVKVDRVEQLFLLAREVCGDDVEAWPAQAWQHIAAQGKRLVRDGVRLEAEDENLAEL 480 TGGG V+R +QLFLLA+ E W WQ ++A +RL++DG LE+ ++NLAEL Sbjct: 431 TGGGTGVNRFKQLFLLAKASGRKTPEDWAGTVWQLLSAHNQRLIKDGATLESPEDNLAEL 490 Query: 481 ATQARLFARTRLPLLRALQVA 501 QAR FA LP+L AL +A Sbjct: 491 TAQAREFAAKELPILHALGIA 511 >ref|YP_611231.1| methyltransferase type 11 [Ruegeria sp. TM1040] gb|ABF61969.1| Hypothetical protein sll1526 [Ruegeria sp. TM1040] Length = 511 Score = 453 bits (1165), Expect = e-125, Method: Composition-based stats. Identities = 234/501 (46%), Positives = 316/501 (63%), Gaps = 11/501 (2%) Query: 1 MNPARLPLAFAFHGLQAPAIQTACELGFGQGLSTNFHAAASTTRWWGNDFNPLQAAFAQE 60 +NP R+ LAF GL P + ACELGFGQGLSTN HAAAS T W G DFNP QA FAQE Sbjct: 22 LNPVRIQLAFLNAGLAPPRVGAACELGFGQGLSTNIHAAASVTTWHGTDFNPSQAGFAQE 81 Query: 61 LAAASGSGAQLEDSSFSHFCRRDDLPDFDFIALHGIWSWVSEDNREIILDFIDRKLKPGG 120 LA G+GAQL D +F FC R+DLP+FDFIALHGIWSW+S++NR +I+DF+ RKLK GG Sbjct: 82 LATDCGNGAQLFDQAFDEFCAREDLPEFDFIALHGIWSWISDENRAVIVDFLRRKLKVGG 141 Query: 121 VLYLSYNTQPGWSAFMPLRDLLVQHTQLAGNEERGLPTAARIEAALAFATRLFETDPVYA 180 VLY+SYNT PGW+ F P+R L+ +H G +G+ ++I A+ F +F+ D Y Sbjct: 142 VLYISYNTLPGWAGFAPMRHLMTEHAARFGTNGQGI--VSQINGAIEFGAHMFDLDARYT 199 Query: 181 QTNPFMRDRLKMLQQQSRSYLAHEYFNRDWHAEPFAEIHRRFSQAGLQFACPAHYIDHLD 240 + ++R L++Q R YLAHEYFN+DW FA++ R A L+FAC A+Y+D +D Sbjct: 200 KAVVGAKERFDKLKEQDRHYLAHEYFNQDWLPMYFADMARWLEPAKLEFACSANYLDAVD 259 Query: 241 MANLTPAQRQCLAEIDDPVLYQSTRDFMVNQTFRRDYWVRGGQVLDERQRVQALALQSVV 300 + NLT Q+ LA I DP+ Q+ RDF+VNQ FR+DYWVRG + L R +AL V+ Sbjct: 260 LINLTQEQQDHLAGIPDPLFRQTVRDFLVNQQFRKDYWVRGARQLTALDRSEALRECRVI 319 Query: 301 LLTEPDKVPLTIQNVAAEITLNRLIYEPILQALSDYQPHTLVDLAASLAHRNLNLSQVID 360 L + VPL + + TL IY+PIL+ L D +PH+L + A++A +N +Q++ Sbjct: 320 LTVAVEDVPLEVTGTLLKATLQDAIYQPILKVLGDQKPHSLGQIEAAVASEGVNFAQLLQ 379 Query: 361 SALMLIGTGHAAPLPPELDAATQAQIARRTADLNAYLLQRAALVLPESQEGDIAHLVSPL 420 + +LIG G AP DA ++ ++ LN L+ +A D+ +L SPL Sbjct: 380 AITLLIGAGSVAPAS---DAEASSKRKKQVQRLNTKLMLKA------RSSNDLRYLTSPL 430 Query: 421 TGGGVKVDRVEQLFLLAREVCGDDVEAWPAQAWQHIAAQGKRLVRDGVRLEAEDENLAEL 480 TGG + V R +QLFLLA++ E W WQ +AAQG+ LV+ G L+ +ENLAEL Sbjct: 431 TGGAITVPRFQQLFLLAKQNGQKIPEDWAKWVWQVLAAQGQSLVKGGKTLQTPEENLAEL 490 Query: 481 ATQARLFARTRLPLLRALQVA 501 TQA F LP+L+ALQ+A Sbjct: 491 TTQAEEFETKALPVLKALQIA 511 >ref|YP_004111546.1| methyltransferase regulatory domain-containing protein [Desulfurispirillum indicum S5] gb|ADU64990.1| Methyltransferase regulatory domain, predicted [Desulfurispirillum indicum S5] Length = 511 Score = 449 bits (1155), Expect = e-124, Method: Composition-based stats. Identities = 227/501 (45%), Positives = 317/501 (63%), Gaps = 11/501 (2%) Query: 1 MNPARLPLAFAFHGLQAPAIQTACELGFGQGLSTNFHAAASTTRWWGNDFNPLQAAFAQE 60 +NP R LAF GLQ P I ACELGFGQG+S N H AAS W+G DFNP Q +FAQ+ Sbjct: 22 LNPRRCQLAFLHSGLQPPQIYNACELGFGQGVSINLHGAASGIPWFGTDFNPAQVSFAQD 81 Query: 61 LAAASGSGAQLEDSSFSHFCRRDDLPDFDFIALHGIWSWVSEDNREIILDFIDRKLKPGG 120 LAA SG+ L D +F+ + RRD LP FD+I LHGIWSW++E NR++I+DFI KLKPGG Sbjct: 82 LAAQSGAAVHLADDTFADYVRRDGLPLFDYIGLHGIWSWINESNRQVIVDFIRCKLKPGG 141 Query: 121 VLYLSYNTQPGWSAFMPLRDLLVQHTQLAGNEERGLPTAARIEAALAFATRLFETDPVYA 180 ++Y+SYN+QPGW+A +P R+LL H G GLP AARI+ A+ FA L +P+YA Sbjct: 142 IVYISYNSQPGWAAMIPWRELLTTHANRMGAP--GLPIAARIDQAMGFARDLMAANPLYA 199 Query: 181 QTNPFMRDRLKMLQQQSRSYLAHEYFNRDWHAEPFAEIHRRFSQAGLQFACPAHYIDHLD 240 Q NP + R + + +Q R YLAHEYFNRDW ++ + +A L +AC AHY+DH+D Sbjct: 200 QANPIVAKRFEDMGKQDRHYLAHEYFNRDWLPMSVMQLSAQLKEARLDYACSAHYLDHID 259 Query: 241 MANLTPAQRQCLAEIDDPVLYQSTRDFMVNQTFRRDYWVRGGQVLDERQRVQALALQSVV 300 NLT Q+Q L++I DP++ + RDF +NQ FRRDYW +G + L ++ AL V+ Sbjct: 260 ALNLTSEQQQLLSKIHDPIMKEMVRDFCMNQQFRRDYWSKGLRRLAPLEQAAALREHVVI 319 Query: 301 LLTEPDKVPLTIQNVAAEITLNRLIYEPILQALSDYQPHTLVDLAASLAHRNLNLSQVID 360 L P + L I+ E +N +Y PIL+ L D++P ++ + +LA RN+ L Q++ Sbjct: 320 LTQHPQDISLKIKGALGEAVMNESVYGPILEYLGDWKPRSIQQIEQALASRNITLIQIVQ 379 Query: 361 SALMLIGTGHAAPLPPELDAATQAQIARRTADLNAYLLQRAALVLPESQEGDIAHLVSPL 420 + L+L G+G A E T AQ+ T LN ++ A +I+ L SP+ Sbjct: 380 AVLVLSGSGSLAACQDEKTIET-AQV--YTDRLNQHICDMA------RSRSEISFLASPV 430 Query: 421 TGGGVKVDRVEQLFLLAREVCGDDVEAWPAQAWQHIAAQGKRLVRDGVRLEAEDENLAEL 480 GGGV V+R+ QLFLLA + + + W AWQ + +QG++LV++G LE+ ++NLAEL Sbjct: 431 IGGGVPVNRIHQLFLLAVRLGHTEPQQWAQYAWQILGSQGQKLVKEGKTLESTEDNLAEL 490 Query: 481 ATQARLFARTRLPLLRALQVA 501 + A+ FA RLP+L+AL V Sbjct: 491 SRNAQEFAEKRLPVLKALAVG 511