BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0525.p (274 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773945.1| two-component response regulator with GGDEF ... 330 2e-88 ref|YP_002947547.1| diguanylate cyclase [Variovorax paradoxus S1... 159 3e-37 ref|YP_004752514.1| putative GGDEF domain-containing protein [Co... 158 8e-37 ref|YP_003157981.1| diguanylate cyclase [Desulfomicrobium bacula... 156 4e-36 ref|YP_001100015.1| GGDEF domain-containing protein [Herminiimon... 147 2e-33 >ref|YP_003773945.1| two-component response regulator with GGDEF domain [Herbaspirillum seropedicae SmR1] gb|ADJ62037.1| two-component response regulator with GGDEF domain (diguanylate cyclase) protein [Herbaspirillum seropedicae SmR1] Length = 277 Score = 330 bits (845), Expect = 2e-88, Method: Composition-based stats. Identities = 220/273 (80%), Positives = 244/273 (89%), Gaps = 1/273 (0%) Query: 1 MSLSRQLQTRLTLSGTAAALLTAIVLTALAMNGSTQGLAVAAVVLVLVSALLSWVLARQL 60 MSLS+ LQTRL+L+ A LLTA VLT LA + VAA+ LVL +ALLSW+L RQL Sbjct: 1 MSLSQTLQTRLSLATAAMVLLTAAVLTVLATTAPAS-MVVAAIALVLAAALLSWLLLRQL 59 Query: 61 LQPLSGLEAGMQQLQEEHKQLVEQRDDARTHLEEMEKTLARVGLEDALTGLANRRQFERG 120 L+PLSGLEA +Q LQ+E QLVE+RDDAR HLEEMEKTLARVGLEDALTGLANRRQFERG Sbjct: 60 LRPLSGLEANLQALQQERVQLVEERDDARVHLEEMEKTLARVGLEDALTGLANRRQFERG 119 Query: 121 LLEEFNRAARTNLSLAIIMIDIDLFDEYNASYGRMAGDKVLRRVGSAIRDTNVRPEDLLS 180 LLEEFNRAART+LSLA+IMIDIDLFDEYN SYGRMAGDKVLRRVGSAIRDTNVRPEDLLS Sbjct: 120 LLEEFNRAARTSLSLAVIMIDIDLFDEYNDSYGRMAGDKVLRRVGSAIRDTNVRPEDLLS 179 Query: 181 RFGTQEIAVLLPGSRLDGALIVAERIRKSIEQLNIEHSASPTGRVTISIGIAAVAPQRQV 240 RFG QEIAVLLPGSRL+GALIVAERIRKSIE L+I HSASPTGRVTISIGI++VAPQRQV Sbjct: 180 RFGAQEIAVLLPGSRLEGALIVAERIRKSIELLDIPHSASPTGRVTISIGISSVAPQRQV 239 Query: 241 DEPDTVLRESEKALALAKAAGRDCIRTTDDFRK 273 DEP+TVLRE+E++LALAK+AGRDCIRT +D R+ Sbjct: 240 DEPETVLREAEESLALAKSAGRDCIRTVEDLRR 272 >ref|YP_002947547.1| diguanylate cyclase [Variovorax paradoxus S110] gb|ACS22281.1| diguanylate cyclase [Variovorax paradoxus S110] Length = 512 Score = 159 bits (403), Expect = 3e-37, Method: Composition-based stats. Identities = 94/223 (42%), Positives = 140/223 (62%), Gaps = 17/223 (7%) Query: 43 VVLVLVSALLSWVLARQLLQPLSGLEAGMQQLQEEHKQLVEQRDDARTHLEEMEKTLARV 102 V+L L+ + W L RQ QLQ + + Q AR LE + KTL + Sbjct: 293 VLLSLIVGFIGWRLVRQF------------QLQTRTEAELRQ---ARDALETLNKTLNTL 337 Query: 103 GLEDALTGLANRRQFERGLLEEFNRAARTNLSLAIIMIDIDLFDEYNASYGRMAGDKVLR 162 +ED LTGLANRRQF+ L E++RAAR +LA+IM+D+D F +YN YG AGD+ L+ Sbjct: 338 AMEDGLTGLANRRQFDVALDSEYSRAARNASTLALIMMDVDCFKQYNDIYGHAAGDECLQ 397 Query: 163 RVGSAI-RDTNVRPEDLLSRFGTQEIAVLLPGSRLDGALIVAERIRKSIEQLNIEHSASP 221 +G I R + RP DL +R+G +E+AVLLP + + GA+++AERIR ++ +L IEH+ + Sbjct: 398 TIGRTIARVASRRPGDLAARYGGEELAVLLPNTDVAGAVMLAERIRSAVRELKIEHAGTA 457 Query: 222 TGRVTISIGIAAVAPQRQV-DEPDTVLRESEKALALAKAAGRD 263 G VT+S G+ A++PQ + +P ++R ++KAL AK+ GR+ Sbjct: 458 DGFVTLSAGVDALSPQAGIGGQPKELIRSADKALYAAKSGGRN 500 >ref|YP_004752514.1| putative GGDEF domain-containing protein [Collimonas fungivorans Ter331] gb|AEK61691.1| putative GGDEF domain protein [Collimonas fungivorans Ter331] Length = 521 Score = 158 bits (400), Expect = 8e-37, Method: Composition-based stats. Identities = 81/181 (44%), Positives = 125/181 (69%) Query: 92 LEEMEKTLARVGLEDALTGLANRRQFERGLLEEFNRAARTNLSLAIIMIDIDLFDEYNAS 151 L + + L ++ L+D+LTGLANRRQF+ L +EF+RA RT SLA++MID+D F +YN Sbjct: 341 LRMLNRHLEQLALQDSLTGLANRRQFDNALRDEFSRAMRTENSLALVMIDVDYFKQYNDI 400 Query: 152 YGRMAGDKVLRRVGSAIRDTNVRPEDLLSRFGTQEIAVLLPGSRLDGALIVAERIRKSIE 211 YG +AGD+ LR++ ++ + RP DL +R+G +E+ VLLP + L GA+ VAE+IR +I Sbjct: 401 YGHLAGDECLRQISEIVKASKNRPGDLAARYGGEELVVLLPDTNLAGAVAVAEKIRVAIC 460 Query: 212 QLNIEHSASPTGRVTISIGIAAVAPQRQVDEPDTVLRESEKALALAKAAGRDCIRTTDDF 271 L+IEH +S G VT+S G+ A P R + P +++ +++AL AK+AGR+ + ++ D Sbjct: 461 NLHIEHPSSTFGLVTVSAGVDAFVPVRDDNIPFELIQAADRALYAAKSAGRNRVCSSADP 520 Query: 272 R 272 R Sbjct: 521 R 521 >ref|YP_003157981.1| diguanylate cyclase [Desulfomicrobium baculatum DSM 4028] gb|ACU89565.1| diguanylate cyclase [Desulfomicrobium baculatum DSM 4028] Length = 339 Score = 156 bits (394), Expect = 4e-36, Method: Composition-based stats. Identities = 88/213 (41%), Positives = 133/213 (62%), Gaps = 5/213 (2%) Query: 54 WVLARQLLQPLSGLEAGMQQLQEEHKQLVEQRDDARTHLEEMEKTLARVGLEDALTGLAN 113 W +AR L + L A + L E+ + + QR LEE L+ + L D LTG+AN Sbjct: 125 WGMARDLTRFLVSQNA-LVHLNEQLEAKILQRT---RELEEANHRLSELSLTDGLTGIAN 180 Query: 114 RRQFERGLLEEFNRAARTNLSLAIIMIDIDLFDEYNASYGRMAGDKVLRRVGSAIRDTNV 173 RR+F+ L EE++R+ART +LA+IM+DID F +YN YG GD LRRV +R + Sbjct: 181 RRRFDAALAEEWSRSARTGSTLALIMLDIDHFKKYNDHYGHQQGDDCLRRVAEVLRSSAR 240 Query: 174 RPEDLLSRFGTQEIAVLLPGSRLDGALIVAERIRKSIEQLNIEHSASPTGRVTISIGIAA 233 R DL+SR+G +E ++LP + L GA +AER+R+ +E +++ H S GRVT S+G+AA Sbjct: 241 RQGDLVSRYGGEEFCMILPDTALPGAFEIAERLRREVENMDMPHVLSDVGRVTASMGVAA 300 Query: 234 VAPQRQVDEPDTVLRESEKALALAKAAGRDCIR 266 P + + P +LR ++++L AK+ GR+C+R Sbjct: 301 SMPCKAM-SPAELLRRADESLYQAKSEGRNCVR 332 >ref|YP_001100015.1| GGDEF domain-containing protein [Herminiimonas arsenicoxydans] emb|CAL61890.1| conserved hypothetical protein, GGDEF domain [Herminiimonas arsenicoxydans] Length = 519 Score = 147 bits (371), Expect = 2e-33, Method: Composition-based stats. Identities = 83/182 (45%), Positives = 118/182 (64%), Gaps = 2/182 (1%) Query: 88 ARTHLEEMEKTLARVGLEDALTGLANRRQFERGLLEEFNRAARTNLSLAIIMIDIDLFDE 147 AR LE LA + L D+LTGLANRR+F+ L +EF RA R SLA+IM+D+D F + Sbjct: 332 ARDDLERSNGELAALALLDSLTGLANRRRFDAALDDEFARAMRNQTSLALIMLDVDHFKK 391 Query: 148 YNASYGRMAGDKVLRRVGSAIRDTNVRPEDLLSRFGTQEIAVLLPGSRLDGALIVAERIR 207 YN YG GD+ L+ + ++ R DL++R+G +E +LLPG+ GA VAER+R Sbjct: 392 YNDRYGHPQGDECLKEISKILKTATARTGDLVARYGGEEFVILLPGTDRAGAAAVAERVR 451 Query: 208 KSIEQLNIEHSASPTGRVTISIGIAAVAPQRQVDEPDTVLRESEKALALAKAAGRD--CI 265 +I+ LN+EH+ +P G VT S+GIAA+ PQRQ + P ++ +++AL AK GR+ CI Sbjct: 452 LAIQALNMEHAETPDGIVTASLGIAALIPQRQQNSPQQLVHAADQALYKAKEDGRNQSCI 511 Query: 266 RT 267 T Sbjct: 512 ST 513