BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0524.p (250 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773948.1| repressor transcription regulator protein [H... 384 e-104 ref|YP_001354594.1| transcriptional regulator [Janthinobacterium... 303 2e-80 ref|YP_001763972.1| helix-turn-helix type 11 domain-containing p... 235 5e-60 ref|YP_002232425.1| putative DNA-binding protein [Burkholderia c... 232 4e-59 ref|YP_620108.1| helix-turn-helix, type 11 [Burkholderia cenocep... 231 7e-59 >ref|YP_003773948.1| repressor transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ62040.1| repressor transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 262 Score = 384 bits (985), Expect = e-104, Method: Composition-based stats. Identities = 215/238 (90%), Positives = 224/238 (94%), Gaps = 3/238 (1%) Query: 1 MRRADRLFQITQYLRGRRLTTARQLAEWLSVSERTVYRDIRDLSLSGVPVQGEAGVGYRI 60 MRRADRLFQITQYLRGRRLTTARQLA WLSVSERT+YRDIRDLSLSGVPV GEAGVGYRI Sbjct: 28 MRRADRLFQITQYLRGRRLTTARQLATWLSVSERTIYRDIRDLSLSGVPVDGEAGVGYRI 87 Query: 61 NKTGFDLPPLMFNADEIDALVIGMRMVQAWGGPQLGASAASALAKVVLALPKEKRDFVEA 120 K G+DLPPLMFNADEIDALVIGMRMVQAWGGPQLGASAASALAKVVLALPKEKRDFVEA Sbjct: 88 -KPGYDLPPLMFNADEIDALVIGMRMVQAWGGPQLGASAASALAKVVLALPKEKRDFVEA 146 Query: 121 TPLFAPAMQDDCGQGERLEAIRQAINSRHKLLLHYTDAQQRSSQRVVWPLALAFFGGTWL 180 TPLFAPA+ D+CGQGERLEAIRQAI SRHKLLL Y+DAQQR+SQRVVWPLALAFFGGTWL Sbjct: 147 TPLFAPAVPDECGQGERLEAIRQAIGSRHKLLLDYSDAQQRASQRVVWPLALAFFGGTWL 206 Query: 181 LAAWCETRDDFRSFRLDRVRQMSEHGHYPDRNGRRLPDFVRAMQRQVRAQQSSAAAPA 238 LAAWCE R+DFRSFRLDRV+QMSE GHYPDRNGRRLPDFVRAMQRQVR Q+ A PA Sbjct: 207 LAAWCEAREDFRSFRLDRVQQMSEQGHYPDRNGRRLPDFVRAMQRQVR--QARAQGPA 262 >ref|YP_001354594.1| transcriptional regulator [Janthinobacterium sp. Marseille] gb|ABR89852.1| transcriptional regulator [Janthinobacterium sp. Marseille] Length = 229 Score = 303 bits (775), Expect = 2e-80, Method: Composition-based stats. Identities = 161/227 (70%), Positives = 190/227 (83%), Gaps = 1/227 (0%) Query: 1 MRRADRLFQITQYLRGRRLTTARQLAEWLSVSERTVYRDIRDLSLSGVPVQGEAGVGYRI 60 MRRA+RLFQI QYLRGRRLTTA QL+EWL VSERT+YRDIRDLSLSGVP++GEAGVGYR+ Sbjct: 1 MRRAERLFQIAQYLRGRRLTTALQLSEWLYVSERTIYRDIRDLSLSGVPIEGEAGVGYRV 60 Query: 61 NKTGFDLPPLMFNADEIDALVIGMRMVQAWGGPQLGASAASALAKVVLALPKEKRDFVEA 120 K GFDL PLMF++DEI+ALV GMRMVQAWGGPQL AS A+ALAK+ LALP+EKRDFVEA Sbjct: 61 -KAGFDLQPLMFSSDEIEALVAGMRMVQAWGGPQLAASGAAALAKITLALPREKRDFVEA 119 Query: 121 TPLFAPAMQDDCGQGERLEAIRQAINSRHKLLLHYTDAQQRSSQRVVWPLALAFFGGTWL 180 TPLFAP + GERLE IRQAI ++KL L Y DA+Q++S R +WPLAL F+G W Sbjct: 120 TPLFAPDFHIEACHGERLENIRQAIGKQNKLRLDYIDAKQQASCRTIWPLALYFWGSGWS 179 Query: 181 LAAWCETRDDFRSFRLDRVRQMSEHGHYPDRNGRRLPDFVRAMQRQV 227 +AAWCETR DFRSFRLDRV+ +++ G Y +GRRL DFVRAM+R++ Sbjct: 180 IAAWCETRSDFRSFRLDRVQALADGGPYAGVSGRRLADFVRAMKREM 226 >ref|YP_001763972.1| helix-turn-helix type 11 domain-containing protein [Burkholderia cenocepacia MC0-3] gb|ACA89850.1| Helix-turn-helix type 11 domain protein [Burkholderia cenocepacia MC0-3] Length = 228 Score = 235 bits (599), Expect = 5e-60, Method: Composition-based stats. Identities = 119/227 (52%), Positives = 161/227 (70%), Gaps = 1/227 (0%) Query: 2 RRADRLFQITQYLRGRRLTTARQLAEWLSVSERTVYRDIRDLSLSGVPVQGEAGVGYRIN 61 RRADRLFQI + LRGRRLTTA+QLA+WLSVS RTVYRD+RDL LSGVP++GEAG+GYR+N Sbjct: 3 RRADRLFQIAELLRGRRLTTAQQLADWLSVSPRTVYRDVRDLQLSGVPIEGEAGIGYRLN 62 Query: 62 KTGFDLPPLMFNADEIDALVIGMRMVQAWGGPQLGASAASALAKVVLALPKEKRDFVEAT 121 + LPPL F A+E+ AL G RM++ WGG + +SA SALAK+ A+P +KR ++ Sbjct: 63 RNA-SLPPLTFTAEELAALATGARMLETWGGARFASSARSALAKIASAMPADKRTALDRL 121 Query: 122 PLFAPAMQDDCGQGERLEAIRQAINSRHKLLLHYTDAQQRSSQRVVWPLALAFFGGTWLL 181 P+FAP+ D +++AI QAI++RH + Y D SQR VWPL L ++GG W + Sbjct: 122 PVFAPSFHIDETFCAKVDAIHQAIDTRHIVSFDYRDRLGAHSQRRVWPLGLVYWGGRWTI 181 Query: 182 AAWCETRDDFRSFRLDRVRQMSEHGHYPDRNGRRLPDFVRAMQRQVR 228 AWCE RDDFR+F + R+ ++ H +PD GRR+ D++R + +R Sbjct: 182 GAWCELRDDFRTFDIARMGDITVHEQFPDMEGRRIADYMRIAEAPMR 228 >ref|YP_002232425.1| putative DNA-binding protein [Burkholderia cenocepacia J2315] emb|CAR53645.1| putative DNA-binding protein [Burkholderia cenocepacia J2315] Length = 228 Score = 232 bits (592), Expect = 4e-59, Method: Composition-based stats. Identities = 117/227 (51%), Positives = 159/227 (70%), Gaps = 1/227 (0%) Query: 2 RRADRLFQITQYLRGRRLTTARQLAEWLSVSERTVYRDIRDLSLSGVPVQGEAGVGYRIN 61 RRADRLFQI + LRGRRLTTA+QLA+WLSVS RTVYRD+RDL LSGVP++GEAG+GYR+N Sbjct: 3 RRADRLFQIAELLRGRRLTTAQQLADWLSVSPRTVYRDVRDLQLSGVPIEGEAGIGYRLN 62 Query: 62 KTGFDLPPLMFNADEIDALVIGMRMVQAWGGPQLGASAASALAKVVLALPKEKRDFVEAT 121 + LPPL F A+E+ AL G RM++ WGG + + A SALA + A+P +KR ++ Sbjct: 63 RNA-SLPPLTFTAEELAALATGARMLETWGGARFASGARSALANIASAMPADKRTALDRL 121 Query: 122 PLFAPAMQDDCGQGERLEAIRQAINSRHKLLLHYTDAQQRSSQRVVWPLALAFFGGTWLL 181 P+FAP+ D +++AI QAI++RH + Y D SQR VWPL L ++GG W + Sbjct: 122 PVFAPSFHIDETFCAKVDAIHQAIDTRHIVSFGYRDRLGAHSQRRVWPLGLVYWGGRWTI 181 Query: 182 AAWCETRDDFRSFRLDRVRQMSEHGHYPDRNGRRLPDFVRAMQRQVR 228 AWCE RDDFR+F + R+ ++ H +PD GRR+ D++R + +R Sbjct: 182 GAWCELRDDFRTFDIARMGDITVHEQFPDMEGRRIADYMRIAEAPMR 228 >ref|YP_620108.1| helix-turn-helix, type 11 [Burkholderia cenocepacia AU 1054] ref|YP_834351.1| helix-turn-helix, type 11 domain-containing protein [Burkholderia cenocepacia HI2424] gb|ABF75135.1| Helix-turn-helix, type 11 [Burkholderia cenocepacia AU 1054] gb|ABK07458.1| Helix-turn-helix, type 11 domain protein [Burkholderia cenocepacia HI2424] Length = 228 Score = 231 bits (589), Expect = 7e-59, Method: Composition-based stats. Identities = 117/227 (51%), Positives = 159/227 (70%), Gaps = 1/227 (0%) Query: 2 RRADRLFQITQYLRGRRLTTARQLAEWLSVSERTVYRDIRDLSLSGVPVQGEAGVGYRIN 61 RRADRLFQI + LRGRRLTTA+QLA+WLSVS RTVYRD+RDL LSGVP++GEAG+GYR+N Sbjct: 3 RRADRLFQIAELLRGRRLTTAQQLADWLSVSPRTVYRDVRDLQLSGVPIEGEAGIGYRLN 62 Query: 62 KTGFDLPPLMFNADEIDALVIGMRMVQAWGGPQLGASAASALAKVVLALPKEKRDFVEAT 121 + LPPL F A+E+ AL G RM++ WGG + + A SALAK+ A+P +KR ++ Sbjct: 63 RNA-SLPPLTFTAEELAALATGARMLETWGGARFASGARSALAKIASAMPADKRTALDRL 121 Query: 122 PLFAPAMQDDCGQGERLEAIRQAINSRHKLLLHYTDAQQRSSQRVVWPLALAFFGGTWLL 181 P+FAP+ D +++AI QAI++RH + Y D SQR VWPL L ++GG W + Sbjct: 122 PVFAPSFHIDETFCAKVDAIHQAIDTRHIVSFDYRDRLGAHSQRRVWPLGLVYWGGRWTI 181 Query: 182 AAWCETRDDFRSFRLDRVRQMSEHGHYPDRNGRRLPDFVRAMQRQVR 228 AWCE R DFR+F + R+ ++ H +PD GRR+ D++R + +R Sbjct: 182 GAWCELRGDFRTFDIARMGDITVHEQFPDMEGRRIADYMRIAEAPMR 228