BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0521.p (282 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773951.1| LysR family transcription regulator protein ... 469 e-130 ref|YP_586312.1| LysR family transcriptional regulator [Cupriavi... 357 1e-96 ref|YP_558996.1| LysR family transcriptional regulator [Burkhold... 355 4e-96 ref|ZP_06845612.1| transcriptional regulator, LysR family [Burkh... 354 9e-96 ref|YP_001862690.1| LysR family transcriptional regulator [Burkh... 353 1e-95 >ref|YP_003773951.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ62043.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 297 Score = 469 bits (1208), Expect = e-130, Method: Composition-based stats. Identities = 271/281 (96%), Positives = 278/281 (98%) Query: 1 MLNPLWLQTFATAATSSSFTEAGRQLGLTQSTVSDHIRRLEESLGRRLFVRDTHSLALTA 60 MLNP+WLQTF+TAA+S+SFTEAGRQLGLTQSTVSDHIRRLEESLGRRLFVRDTHSLALTA Sbjct: 16 MLNPIWLQTFSTAASSASFTEAGRQLGLTQSTVSDHIRRLEESLGRRLFVRDTHSLALTA 75 Query: 61 DGESLLVHARLILQAHARAEAQFSAPRLRGRVRFGTSDDLAMGPLPDMLAAFRSQHPEVE 120 DGESLLVHARLILQAHARAEAQFSAPRLRGRVRFGTSDDLAMGPLPDMLAAFRSQHPEVE Sbjct: 76 DGESLLVHARLILQAHARAEAQFSAPRLRGRVRFGTSDDLAMGPLPDMLAAFRSQHPEVE 135 Query: 121 LEITIGLTSELYASLDQGKLDLLVGKRRAGESRGHSMFSTPMQWLTRPDTLVDLTEPLPL 180 LEITIGLTS+LYASLDQGKLDLLVGKRR+GESRGHSMFSTPMQWLTRPDTLVDL EPLPL Sbjct: 136 LEITIGLTSDLYASLDQGKLDLLVGKRRSGESRGHSMFSTPMQWLTRPDTLVDLAEPLPL 195 Query: 181 ILLPEPSITRAATLQALGKSGYHWRIVCTSGSHAGCMAAARGGLGLAALPQHLASRDLVV 240 ILLPEPSITRAATLQALGKSG+HWRIVCTSGSHAGCMAAARGGLGLAALPQHLASRDLV Sbjct: 196 ILLPEPSITRAATLQALGKSGHHWRIVCTSGSHAGCMAAARGGLGLAALPQHLASRDLVP 255 Query: 241 PLNHAALPRLPDVEYVALTARRLSRPADTLYQILMASRLSR 281 PLNHAALP LPDVEYVALTARRLSRPADTLYQILMASRLSR Sbjct: 256 PLNHAALPALPDVEYVALTARRLSRPADTLYQILMASRLSR 296 >ref|YP_586312.1| LysR family transcriptional regulator [Cupriavidus metallidurans CH34] gb|ABF11043.1| transcriptional regulator, LysR family [Cupriavidus metallidurans CH34] Length = 298 Score = 357 bits (917), Expect = 1e-96, Method: Composition-based stats. Identities = 183/279 (65%), Positives = 228/279 (81%) Query: 1 MLNPLWLQTFATAATSSSFTEAGRQLGLTQSTVSDHIRRLEESLGRRLFVRDTHSLALTA 60 MLNP+W+QTFAT AT+ SFT+AGRQLGL+QS+VSDHIRRLE S+ RRLFVRDTHSLALT Sbjct: 14 MLNPVWIQTFATVATARSFTDAGRQLGLSQSSVSDHIRRLEGSVSRRLFVRDTHSLALTP 73 Query: 61 DGESLLVHARLILQAHARAEAQFSAPRLRGRVRFGTSDDLAMGPLPDMLAAFRSQHPEVE 120 DGE+LLVHARLIL++ ARAE+QFS PRL+GRVR GTS+DLA GPLP++LAAFR+ HP+VE Sbjct: 74 DGEALLVHARLILESLARAESQFSGPRLQGRVRLGTSEDLAQGPLPNVLAAFRATHPDVE 133 Query: 121 LEITIGLTSELYASLDQGKLDLLVGKRRAGESRGHSMFSTPMQWLTRPDTLVDLTEPLPL 180 LEITIG+TS+LY ++ G LDL+VGKRR GE RG +F ++WL RP T+VD+ +PLPL Sbjct: 134 LEITIGMTSKLYEWMEAGTLDLIVGKRREGERRGVPLFRGRLEWLARPGTVVDVRQPLPL 193 Query: 181 ILLPEPSITRAATLQALGKSGYHWRIVCTSGSHAGCMAAARGGLGLAALPQHLASRDLVV 240 IL+ EPS+TR+ L L K+G+ WR+VCTS SH+GC+AAARGGLG+ ++L LV Sbjct: 194 ILVNEPSVTRSVVLDTLAKNGWRWRVVCTSSSHSGCIAAARGGLGITVRAENLTGGGLVP 253 Query: 241 PLNHAALPRLPDVEYVALTARRLSRPADTLYQILMASRL 279 P+N ALP LPDVE++ L ARRL+ PADTL Q++ S L Sbjct: 254 PVNFDALPALPDVEFITLAARRLTEPADTLLQLIRKSDL 292 >ref|YP_558996.1| LysR family transcriptional regulator [Burkholderia xenovorans LB400] gb|ABE30944.1| transcriptional regulator, LysR family [Burkholderia xenovorans LB400] Length = 286 Score = 355 bits (912), Expect = 4e-96, Method: Composition-based stats. Identities = 185/279 (66%), Positives = 231/279 (82%) Query: 1 MLNPLWLQTFATAATSSSFTEAGRQLGLTQSTVSDHIRRLEESLGRRLFVRDTHSLALTA 60 MLNP+WL+TF+T A SFTEAGR+LGLTQS+VS+HIRRLEES+GRRLFVRDTHSLA+T Sbjct: 1 MLNPIWLKTFSTVAACHSFTEAGRRLGLTQSSVSEHIRRLEESVGRRLFVRDTHSLAMTP 60 Query: 61 DGESLLVHARLILQAHARAEAQFSAPRLRGRVRFGTSDDLAMGPLPDMLAAFRSQHPEVE 120 DGE++L HA +ILQA ARAE+QF APRL+GRVR G+SDD+A+GPLP +LAAFR+ HP+VE Sbjct: 61 DGEAMLAHASVILQALARAESQFRAPRLKGRVRLGSSDDVALGPLPTVLAAFRNAHPDVE 120 Query: 121 LEITIGLTSELYASLDQGKLDLLVGKRRAGESRGHSMFSTPMQWLTRPDTLVDLTEPLPL 180 LEITIG+T +LY LD G +DLLVGKRR G+ RG +F+ ++WL R TLVDL++PLPL Sbjct: 121 LEITIGMTGKLYELLDAGAIDLLVGKRRLGDRRGVPLFTGRLEWLARAGTLVDLSQPLPL 180 Query: 181 ILLPEPSITRAATLQALGKSGYHWRIVCTSGSHAGCMAAARGGLGLAALPQHLASRDLVV 240 IL+ EPS+TRA L AL ++G+ W++VCTS SHAGC+AAARGGLG+ PQ+LA+R L Sbjct: 181 ILVAEPSVTRAVVLDALAEAGFRWQVVCTSSSHAGCIAAARGGLGIMVRPQYLAARGLAA 240 Query: 241 PLNHAALPRLPDVEYVALTARRLSRPADTLYQILMASRL 279 PLN A+LP LP VE++AL A+RLSRPA TL ++L S L Sbjct: 241 PLNAASLPALPSVEFIALAAKRLSRPAGTLLKLLHDSDL 279 >ref|ZP_06845612.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1] gb|EFG66762.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1] Length = 286 Score = 354 bits (908), Expect = 9e-96, Method: Composition-based stats. Identities = 184/279 (65%), Positives = 230/279 (82%) Query: 1 MLNPLWLQTFATAATSSSFTEAGRQLGLTQSTVSDHIRRLEESLGRRLFVRDTHSLALTA 60 MLNP+WL+TF+T A SFTEAGR+LGLTQS+VS+HIRRLEES+GRRLFVRDTHSLA+T Sbjct: 1 MLNPIWLKTFSTVAACHSFTEAGRRLGLTQSSVSEHIRRLEESVGRRLFVRDTHSLAMTP 60 Query: 61 DGESLLVHARLILQAHARAEAQFSAPRLRGRVRFGTSDDLAMGPLPDMLAAFRSQHPEVE 120 DGE++L HA +ILQA RAE+QF APRL+GRVR G+SDD+A+GPLP +LAAFR+ HP+VE Sbjct: 61 DGEAMLAHASVILQALTRAESQFRAPRLKGRVRLGSSDDVALGPLPTVLAAFRNAHPDVE 120 Query: 121 LEITIGLTSELYASLDQGKLDLLVGKRRAGESRGHSMFSTPMQWLTRPDTLVDLTEPLPL 180 LEITIG+T +LY LD G +DLLVGKRR G+ RG +F+ ++WL R TLVDL++PLPL Sbjct: 121 LEITIGMTGKLYELLDAGAIDLLVGKRRLGDRRGVPLFTGRLEWLARAGTLVDLSQPLPL 180 Query: 181 ILLPEPSITRAATLQALGKSGYHWRIVCTSGSHAGCMAAARGGLGLAALPQHLASRDLVV 240 IL+ EPS+TRA L AL ++G+ W++VCTS SHAGC+AAARGGLG+ PQ+LA+R L Sbjct: 181 ILVAEPSVTRAVVLDALAEAGFRWQVVCTSSSHAGCIAAARGGLGIMVRPQYLAARGLAA 240 Query: 241 PLNHAALPRLPDVEYVALTARRLSRPADTLYQILMASRL 279 PLN A+LP LP VE++AL A+RLSRPA TL ++L S L Sbjct: 241 PLNTASLPALPSVEFIALAAKRLSRPAGTLLKLLHDSDL 279 >ref|YP_001862690.1| LysR family transcriptional regulator [Burkholderia phymatum STM815] gb|ACC75644.1| transcriptional regulator, LysR family [Burkholderia phymatum STM815] Length = 286 Score = 353 bits (907), Expect = 1e-95, Method: Composition-based stats. Identities = 181/280 (64%), Positives = 225/280 (80%) Query: 1 MLNPLWLQTFATAATSSSFTEAGRQLGLTQSTVSDHIRRLEESLGRRLFVRDTHSLALTA 60 MLNPLWL+TFAT SFTEAG++LGL QS+VS+HIRRLEES+GRRLFVRDTHSLA+TA Sbjct: 1 MLNPLWLRTFATVTNCRSFTEAGKRLGLNQSSVSEHIRRLEESVGRRLFVRDTHSLAMTA 60 Query: 61 DGESLLVHARLILQAHARAEAQFSAPRLRGRVRFGTSDDLAMGPLPDMLAAFRSQHPEVE 120 DGE+LLVHA +ILQA RAE+QF PRL+GRVR GTSDD+A+G LP +LAAFR HP+VE Sbjct: 61 DGEALLVHANVILQAMNRAESQFRKPRLKGRVRLGTSDDIALGALPTVLAAFRHAHPDVE 120 Query: 121 LEITIGLTSELYASLDQGKLDLLVGKRRAGESRGHSMFSTPMQWLTRPDTLVDLTEPLPL 180 L+ITIG+TS LY LD G +DLLVGKRR GE RG + + ++W+ RP T+VDL +PLPL Sbjct: 121 LDITIGMTSRLYELLDAGSIDLLVGKRRLGERRGTPLLRSRLEWIARPGTVVDLNQPLPL 180 Query: 181 ILLPEPSITRAATLQALGKSGYHWRIVCTSGSHAGCMAAARGGLGLAALPQHLASRDLVV 240 +L+ EPS+TRA L AL + G+ W ++CTS SHAGC+AAARGGLGL A Q++++R L Sbjct: 181 VLVAEPSVTRAVVLNALAEKGFGWEVICTSSSHAGCIAAARGGLGLTAKSQYVSARGLSP 240 Query: 241 PLNHAALPRLPDVEYVALTARRLSRPADTLYQILMASRLS 280 P+N A+LP LPDVE++AL A+RLS PA TL ++L S LS Sbjct: 241 PVNSASLPALPDVEFIALAAKRLSHPAGTLLELLQGSDLS 280