BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.0520.p         (132 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_623736.1| hypothetical protein Bcen_3873 [Burkholderia ce...   137   4e-31
ref|YP_001779419.1| hypothetical protein Bcenmc03_5808 [Burkhold...   137   5e-31
ref|YP_002234287.1| hypothetical protein BCAM1675 [Burkholderia ...   135   2e-30
ref|ZP_04941636.1| hypothetical protein BCPG_03146 [Burkholderia...   134   7e-30
ref|ZP_02908894.1| conserved hypothetical protein [Burkholderia ...   132   1e-29

>ref|YP_623736.1| hypothetical protein Bcen_3873 [Burkholderia cenocepacia AU 1054]
 ref|YP_838123.1| hypothetical protein Bcen2424_4496 [Burkholderia cenocepacia
           HI2424]
 gb|ABF78763.1| conserved hypothetical protein [Burkholderia cenocepacia AU 1054]
 gb|ABK11230.1| conserved hypothetical protein [Burkholderia cenocepacia HI2424]
          Length = 129

 Score =  137 bits (346), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 70/127 (55%), Positives = 93/127 (73%), Gaps = 1/127 (0%)

Query: 5   LPHPDLAQLRALAADSAAITVDCNCRAADSSGWISLPLSLPETQLVDVATLIADPYDEPT 64
           LP+ D   L  L A++A +T  C C     +GW +LPLSLP+TQL++VATL      EPT
Sbjct: 4   LPYLDHDALLTLTAEAAHVTQPCTCTKTSLAGWTTLPLSLPDTQLIEVATLAPPGEPEPT 63

Query: 65  FTEYHPQGTRYASPEAPIAPAWYPYNRCNIARCTQCGRHYLRYMEAGGYFVDRRIRSLNA 124
           + EYHP GTRYAS +APIAP  +PYNRC ++RC+ CGR +LRY E GGYF+D+RIR+L+ 
Sbjct: 64  YAEYHPAGTRYASDDAPIAPRHFPYNRCTVSRCSTCGRLFLRYQEGGGYFIDQRIRALD- 122

Query: 125 PALIVEA 131
           PAL+++A
Sbjct: 123 PALVIDA 129


>ref|YP_001779419.1| hypothetical protein Bcenmc03_5808 [Burkholderia cenocepacia MC0-3]
 gb|ACA94929.1| conserved hypothetical protein [Burkholderia cenocepacia MC0-3]
          Length = 129

 Score =  137 bits (345), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 71/127 (55%), Positives = 92/127 (72%), Gaps = 1/127 (0%)

Query: 5   LPHPDLAQLRALAADSAAITVDCNCRAADSSGWISLPLSLPETQLVDVATLIADPYDEPT 64
           LP+ D   L  L A++A +T  C C     +GW +LPLSLP+TQL++VATL      EPT
Sbjct: 4   LPYLDHDALLKLTAEAAHVTQPCTCTKTSLAGWTTLPLSLPDTQLIEVATLAPPGEPEPT 63

Query: 65  FTEYHPQGTRYASPEAPIAPAWYPYNRCNIARCTQCGRHYLRYMEAGGYFVDRRIRSLNA 124
           + EYHP GTRYAS +APIAP  +PYNRC ++RC  CGR +LRY E GGYF+D+RIR+L+ 
Sbjct: 64  YAEYHPAGTRYASDDAPIAPRHFPYNRCTVSRCRTCGRLFLRYQEGGGYFIDQRIRALD- 122

Query: 125 PALIVEA 131
           PAL+V+A
Sbjct: 123 PALVVDA 129


>ref|YP_002234287.1| hypothetical protein BCAM1675 [Burkholderia cenocepacia J2315]
 emb|CAR55532.1| conserved hypothetical protein [Burkholderia cenocepacia J2315]
          Length = 129

 Score =  135 bits (339), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 70/127 (55%), Positives = 92/127 (72%), Gaps = 1/127 (0%)

Query: 5   LPHPDLAQLRALAADSAAITVDCNCRAADSSGWISLPLSLPETQLVDVATLIADPYDEPT 64
           LP+ D   L  L A++A +T  C C     +GW +LPLSLP+TQL++VATL+     EPT
Sbjct: 4   LPYLDHDALLTLTAEAAHVTQPCTCTKTSLAGWTTLPLSLPDTQLLEVATLMPPGDAEPT 63

Query: 65  FTEYHPQGTRYASPEAPIAPAWYPYNRCNIARCTQCGRHYLRYMEAGGYFVDRRIRSLNA 124
           + EYHP GT YAS +APIAP  +PYNRC ++RC  CGR +LRY E GGYF+D+RIR+L+ 
Sbjct: 64  YAEYHPAGTHYASDDAPIAPRHFPYNRCTVSRCRPCGRLFLRYQEGGGYFIDQRIRALD- 122

Query: 125 PALIVEA 131
           PAL+V+A
Sbjct: 123 PALVVDA 129


>ref|ZP_04941636.1| hypothetical protein BCPG_03146 [Burkholderia cenocepacia PC184]
 gb|EAY64807.1| hypothetical protein BCPG_03146 [Burkholderia cenocepacia PC184]
          Length = 162

 Score =  134 bits (336), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 70/127 (55%), Positives = 91/127 (71%), Gaps = 1/127 (0%)

Query: 5   LPHPDLAQLRALAADSAAITVDCNCRAADSSGWISLPLSLPETQLVDVATLIADPYDEPT 64
           LP+ D   L  L  ++A +T  C C     +GW +LPLSLP+TQL++VATL      EPT
Sbjct: 37  LPYLDHDALLTLTDEAAHVTQSCTCTKTSLAGWTTLPLSLPDTQLIEVATLAPPGDAEPT 96

Query: 65  FTEYHPQGTRYASPEAPIAPAWYPYNRCNIARCTQCGRHYLRYMEAGGYFVDRRIRSLNA 124
           + EYHP GTRYAS +APIAP  +PYNRC ++RC  CGR +LRY E GGYF+D+RIR+L+ 
Sbjct: 97  YAEYHPAGTRYASDDAPIAPRHFPYNRCTVSRCRTCGRLFLRYQEGGGYFIDQRIRALD- 155

Query: 125 PALIVEA 131
           PAL+V+A
Sbjct: 156 PALVVDA 162


>ref|ZP_02908894.1| conserved hypothetical protein [Burkholderia ambifaria MEX-5]
 gb|EDT39967.1| conserved hypothetical protein [Burkholderia ambifaria MEX-5]
          Length = 133

 Score =  132 bits (333), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 77/127 (60%), Positives = 92/127 (72%), Gaps = 1/127 (0%)

Query: 5   LPHPDLAQLRALAADSAAITVDCNCRAADSSGWISLPLSLPETQLVDVATLIADPYDEPT 64
           LP+ D A L  LAA++A +T  C C     +GW SLPLSLP TQL +VATL      EPT
Sbjct: 4   LPYLDHAALLKLAAEAAGVTQPCTCTKTSLAGWTSLPLSLPHTQLAEVATLAPPDEPEPT 63

Query: 65  FTEYHPQGTRYASPEAPIAPAWYPYNRCNIARCTQCGRHYLRYMEAGGYFVDRRIRSLNA 124
           + EYHP GTRY S +APIAP  +PYNRCNI+RC  CGR YLRY E GGYF+D+RIR+L+ 
Sbjct: 64  YDEYHPAGTRYGSDDAPIAPRHFPYNRCNISRCVTCGRLYLRYQEGGGYFIDQRIRALD- 122

Query: 125 PALIVEA 131
           PALIV+A
Sbjct: 123 PALIVDA 129