BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0519.p (545 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773952.1| hypothetical protein Hsero_0525 [Herbaspiril... 931 0.0 ref|ZP_08780656.1| protein of unknown function DUF342 [Methyloba... 329 8e-88 ref|NP_951570.1| hypothetical protein GSU0512 [Geobacter sulfurr... 318 1e-84 ref|YP_385965.1| hypothetical protein Gmet_3025 [Geobacter metal... 312 1e-82 ref|YP_001232368.1| hypothetical protein Gura_3642 [Geobacter ur... 303 4e-80 >ref|YP_003773952.1| hypothetical protein Hsero_0525 [Herbaspirillum seropedicae SmR1] gb|ADJ62044.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 545 Score = 931 bits (2405), Expect = 0.0, Method: Composition-based stats. Identities = 500/545 (91%), Positives = 527/545 (96%) Query: 1 MNQATPQPLSFAFDRASGELSATWQPVQGFPPLTLAFLKQAMTDHGLTKLFFQDSVLNGF 60 MNQA PQPLSFAFDRASGELSAT+ P++GFPPLTLAFLKQAMTDHGLTKLFFQDSVLN F Sbjct: 1 MNQANPQPLSFAFDRASGELSATFTPMEGFPPLTLAFLKQAMTDHGLTKLFFQDSVLNAF 60 Query: 61 VRKAEDAKEPVTQVIAERRDGEFSLDVSDDLMTASLTLVPPYGGRAKSVEVVNAIRAAGI 120 VRKAE AKE V+QVIAERRDGEF+L+V+DDLMTASLTLVPPYGGRAKSVEVVNAIRAAGI Sbjct: 61 VRKAEGAKEAVSQVIAERRDGEFALEVADDLMTASLTLVPPYGGRAKSVEVVNAIRAAGI 120 Query: 121 TYGILHEQLRGALSAGFCNKLVVAQGLMPTPAEPARFESLLEEKEEELADIDEDAVVSYA 180 +YGILHE LR ALSAG CNKLV+AQGLMPTPAEPARFESLLEEKEEELADIDEDAVVSYA Sbjct: 121 SYGILHETLRHALSAGQCNKLVIAQGLMPTPAEPARFESLLEEKEEELADIDEDAVVSYA 180 Query: 181 DMGHILLVKVGDPLMRRTPPVPGQDGIDIRGGKVPARPIADVPFSKECIGAEPSEEDPDL 240 DMGHIL V VGDPLMRR PPVPGQDGIDIRGGKVPARPIAD+ F+KEC+GAEPS +DPDL Sbjct: 181 DMGHILQVSVGDPLMRRIPPVPGQDGIDIRGGKVPARPIADIGFAKECVGAEPSPDDPDL 240 Query: 241 LVAIVPGQPTVIKNGVKVNPVLDVENVDLSTGNLSFEGTVRVSGDVLTGMKMNVGGDVVI 300 L+A+VPGQP++IKNGVKVNPV+DVENVDLSTGNL+FEGTVRVSGDV+TGMK++VGGDVV+ Sbjct: 241 LIAMVPGQPSLIKNGVKVNPVIDVENVDLSTGNLTFEGTVRVSGDVMTGMKLHVGGDVVV 300 Query: 301 NGTVEAAEIVAGGSVTVKGGVIGHSEGVTAQAGTTAIASRISSQKSVQVMFAESAHIEAA 360 NGTVEAAEIVAGGSVTVKGGVIGHSEGV A AGTTAIASRISSQKSVQVMFAESAHIEAA Sbjct: 301 NGTVEAAEIVAGGSVTVKGGVIGHSEGVAAGAGTTAIASRISSQKSVQVMFAESAHIEAA 360 Query: 361 DDILVLGNARHCELLAGNEITVGKGNPRTGHIIGGRVEATNIIRANVIGASTTTHTRVQV 420 DDILVLGNARHCELLAGNEITVGKGNPRTGHIIGGRVEATNIIRANVIGA T HTR+QV Sbjct: 361 DDILVLGNARHCELLAGNEITVGKGNPRTGHIIGGRVEATNIIRANVIGAPTAAHTRIQV 420 Query: 421 GLDPYLEEKIAIKEQEYTRKVAELDRTIKQQSYYKLNPEKATPELLHETSDKRKALAYEV 480 GLDPYLEEKIAIKEQEY+RKVAELDRTIKQQSYYKLNP+KATPELLHETSDKRKALAYEV Sbjct: 421 GLDPYLEEKIAIKEQEYSRKVAELDRTIKQQSYYKLNPDKATPELLHETSDKRKALAYEV 480 Query: 481 KVLLEEVSQMKEGMVAAEDARIIVAKAVYEGTELRIGHEVWPVQSDLGGGTAQLFEGDIR 540 KVLLEEVSQMKEGMVAAEDARIIVAKAV+EGTELRIGHEVWPVQSDLGGGTAQLFEGDIR Sbjct: 481 KVLLEEVSQMKEGMVAAEDARIIVAKAVHEGTELRIGHEVWPVQSDLGGGTAQLFEGDIR 540 Query: 541 YNPKK 545 YNPKK Sbjct: 541 YNPKK 545 >ref|ZP_08780656.1| protein of unknown function DUF342 [Methylobacter tundripaludum SV96] gb|EGW22831.1| protein of unknown function DUF342 [Methylobacter tundripaludum SV96] Length = 559 Score = 329 bits (843), Expect = 8e-88, Method: Composition-based stats. Identities = 198/552 (35%), Positives = 318/552 (57%), Gaps = 15/552 (2%) Query: 1 MNQATPQP-LSFAFDRASGELSATWQPVQGFPPLTLAFLKQAMTDHGLTKLFFQDSVLNG 59 MN A+P L+F G+L AT++ + P L A +K + GL+ LF ++ L+ Sbjct: 1 MNDASPTDGLTFKLSD-DGKLLATFEASECKPLLDEATIKATLAKQGLSNLFLHENALSN 59 Query: 60 FVRKAEDAKEPVTQVIAERRDGEFSLDVSDDLMTASLTLVPPYGGRAKSV-EVVNAIRAA 118 V++ E I ERRDG +L + DD MTA LTL+PPYGG ++ ++ A++ Sbjct: 60 LVKRYNSPGEGFVLEIGERRDGGCTLKIDDDKMTARLTLIPPYGGAPVALFQIQLALQEK 119 Query: 119 GITYGILHEQLRGALSAGFCNKLVVAQGLMPTPAEPARFESLLEEKEEELADIDEDAVVS 178 G+ G++ +++ AL G+ + ++AQGL P ARF+SL+ + E ++E + + Sbjct: 120 GVVRGVMIKEIEAALKEGYATERIIAQGLRPVRGIDARFQSLIPQIRERKPQVNERGIAN 179 Query: 179 YADMGHILLVKVGDPLMRRTPPVPGQDGIDIRGGKVPARPIADVPFSKECIGAE---PSE 235 Y D+G +++VK GDPLM RTPP G+ G DI G + +P DV F+ G E +E Sbjct: 180 YRDLGQLIVVKPGDPLMCRTPPTEGKKGWDITGQALMPQPGQDVQFAPGLQGVELDTDAE 239 Query: 236 EDPD---LLVAIVPGQPTVIKNGVKVNPVLDVENVDLSTGNLSFEGTVRVSGDVLTGMKM 292 DPD LL+A + GQP ++ NGV V P + + VD+STGN+SF+GT+ + GDV GMK+ Sbjct: 240 LDPDNNSLLLAAIAGQPKLVPNGVVVEPTIALSLVDISTGNMSFDGTINIKGDVKDGMKI 299 Query: 293 NVGGDVVINGTVEAAEIVAGGSVTVKGGVIGHSEGVTAQAGTTAIASRISSQKSVQVMFA 352 + GDV + GTVEAAEI AGG++ +KGGVIGHSE + + I S+ S+ FA Sbjct: 300 HATGDVFVGGTVEAAEIEAGGNIVIKGGVIGHSEHSGDPNEVSTFNAIIISKGSISAHFA 359 Query: 353 ESAHIEAADDILVLGNARHCELLAGNEITVGKGNPRTGHIIGGRVEATNIIRANVIGAST 412 E+A +EA DI++ + H L A N + VGK + G IIGG A+++++ +IG+S Sbjct: 360 ENACMEAGVDIIIEEFSMHNHLTALNRVLVGKSVGKKGRIIGGITSASDLVKTAIIGSSA 419 Query: 413 TTHTRVQVGLDPYL---EEKIAIKEQEYTRKVAELDRTIKQQSYYKLNPEKATPELLHET 469 T+V+ G +PYL ++++ ++ + ++ +L + I ++ +PEK LL++ Sbjct: 420 GFVTKVRAGFNPYLQAEQDRLKLEIEALEKEQEDLKKII---AFVLAHPEKDKNGLLNKA 476 Query: 470 SDKRKALAYEVKVLLEEVSQMKEGMVAAEDARIIVAKAVYEGTELRIGHEVWPVQSDLGG 529 R+ + + L + + + M AE ++IV +AV+ G E++IG+ VW + G Sbjct: 477 LHTREKIEMDCTRLHVDRTHLLSEMTLAEHVQVIVEEAVHAGAEIQIGNAVWKNNEERGK 536 Query: 530 GTAQLFEGDIRY 541 G Q+ E +I + Sbjct: 537 GVFQIVENEIVF 548 >ref|NP_951570.1| hypothetical protein GSU0512 [Geobacter sulfurreducens PCA] gb|AAR33843.1| conserved hypothetical protein [Geobacter sulfurreducens PCA] gb|ADI83364.1| protein of unknown function DUF342 [Geobacter sulfurreducens KN400] Length = 546 Score = 318 bits (816), Expect = 1e-84, Method: Composition-based stats. Identities = 187/532 (35%), Positives = 290/532 (54%), Gaps = 2/532 (0%) Query: 9 LSFAFDRASGELSATWQPVQGFPPLTLAFLKQAMTDHGLTKLFFQDSVLNGFVRKAEDAK 68 L+F D +LSA++ P PP+ L ++KQA+ G L+ + L +++ A Sbjct: 12 LTFRLDGGGYKLSASFVPTDEKPPINLTWIKQALAAAGFADLYLYEHALVELLKRYNAAS 71 Query: 69 EPVTQVIAERRDGEFSLDVSDDLMTASLTLVPPYGGRAKSVEVV-NAIRAAGITYGILHE 127 +P T + ERR+G F++ + D + A LT++P YGG+A + E V A++ GI +G+ E Sbjct: 72 QPFTFDLGERRNGSFTITCTPDNLEARLTIIPAYGGKAVAAEQVRQALKEKGIVFGVDEE 131 Query: 128 QLRGALSAGFCNKLVVAQGLMPTPAEPARFESLLEEKEEELADIDEDAVVSYADMGHILL 187 + A++ G + L+VA+G+ P S + E + + +D V Y ++G IL Sbjct: 132 AINRAIADGVASDLLVARGIPPQSGTDGELVSFVPEIRDRQPQLLDDDRVDYRNLGQILS 191 Query: 188 VKVGDPLMRRTPPVPGQDGIDIRGGKVPARPIADVPFSKECIGAEPSEEDPDLLVAIVPG 247 V+ G+PLMRR PPV G G I G + + P DV F+ G +DP+LLVA V G Sbjct: 192 VRAGEPLMRRIPPVEGVAGTSITGKAISSPPARDVAFAPNLPGTAFDADDPNLLVAAVDG 251 Query: 248 QPTVIKNGVKVNPVLDVENVDLSTGNLSFEGTVRVSGDVLTGMKMNVGGDVVINGTVEAA 307 QP ++ NG+ V VL ++ VDLS GNL F GT+ ++GDV+ GM + GD++I G VEA+ Sbjct: 252 QPVLVANGIVVEQVLRLKLVDLSVGNLDFNGTIDIAGDVVAGMTVKASGDIIIGGVVEAS 311 Query: 308 EIVAGGSVTVKGGVIGHSEGVTAQAGTTAIASRISSQKSVQVMFAESAHIEAADDILVLG 367 I AGG++ V+GGVIG + ++ A RI + V F E+A +EA D I V Sbjct: 312 RIEAGGNIEVRGGVIGQGDTRSSAAEAGRDTVRIRAGGCVSAQFVENAFVEAGDSIQVQE 371 Query: 368 NARHCELLAGNEITVGKGNPRTGHIIGGRVEATNIIRANVIGASTTTHTRVQVGLDPYLE 427 EL+AGN+I VG GH+IGG +A N++RA +G+ HT V VG+DP++ Sbjct: 372 FCMQSELVAGNQIVVGHDGGSKGHVIGGSCQAINLVRAVTLGSHAGVHTTVSVGVDPHVR 431 Query: 428 EKIAIKEQEYTRKVAELDRTIKQQSYYKLNPEKATPELLHETSDKRKALAYEVKVLLEEV 487 E+ + + K E+D K+ YY P A PE + T + R L + L E Sbjct: 432 ERFSTVRLKLQEKEREMDELAKKLEYYVSLPS-AQPEQVARTREARDKLQSVISELTGEK 490 Query: 488 SQMKEGMVAAEDARIIVAKAVYEGTELRIGHEVWPVQSDLGGGTAQLFEGDI 539 ++++ + A+++V + G + IG +V+ V DLG ++ EG I Sbjct: 491 KRLQKRLEQVASAQVVVEREALVGVVISIGAKVFQVDEDLGATVFRIEEGAI 542 >ref|YP_385965.1| hypothetical protein Gmet_3025 [Geobacter metallireducens GS-15] gb|ABB33240.1| protein of unknown function DUF342 [Geobacter metallireducens GS-15] Length = 546 Score = 312 bits (799), Expect = 1e-82, Method: Composition-based stats. Identities = 180/540 (33%), Positives = 294/540 (54%), Gaps = 2/540 (0%) Query: 1 MNQATPQPLSFAFDRASG-ELSATWQPVQGFPPLTLAFLKQAMTDHGLTKLFFQDSVLNG 59 M ++ P F A +L A + P + L FL+ A+ G LF D L Sbjct: 1 MGESPSNPSGLTFRLADDRKLKAIYVPAAEKASVNLGFLRHALVAGGFADLFIYDHALVE 60 Query: 60 FVRKAEDAKEPVTQVIAERRDGEFSLDVSDDLMTASLTLVPPYGGRAKSVEVVN-AIRAA 118 +++ A + + E+RDG + + + D + A LTL PYGG+ E ++ A+R Sbjct: 61 LIKRYNAATQEFVYDVGEQRDGTYIIRNTPDNIEAYLTLTRPYGGKPVCPEQLHQALREQ 120 Query: 119 GITYGILHEQLRGALSAGFCNKLVVAQGLMPTPAEPARFESLLEEKEEELADIDEDAVVS 178 G+ YG+L +++ A+ AG L++A+G+ P A SL+ + + ++ ++ V Sbjct: 121 GVIYGVLTDEIETAIEAGEATDLLIARGIPPEQGTDAELVSLIPQARDRQPELQDNETVD 180 Query: 179 YADMGHILLVKVGDPLMRRTPPVPGQDGIDIRGGKVPARPIADVPFSKECIGAEPSEEDP 238 Y D G I VK GDPLMRR PP PG+ G +I G +VPA P D+ F+ G + +DP Sbjct: 181 YRDRGEISSVKAGDPLMRRIPPTPGKPGTNIMGKEVPAPPAKDLKFTPNLPGTTFAPDDP 240 Query: 239 DLLVAIVPGQPTVIKNGVKVNPVLDVENVDLSTGNLSFEGTVRVSGDVLTGMKMNVGGDV 298 DLL+A + GQP ++ NGV + PV+ ++NVDLS+GN+SF+G+V +SGD+ GM + GD+ Sbjct: 241 DLLIAAIDGQPVLVANGVMIEPVIKIKNVDLSSGNISFKGSVDISGDITPGMTVRATGDI 300 Query: 299 VINGTVEAAEIVAGGSVTVKGGVIGHSEGVTAQAGTTAIASRISSQKSVQVMFAESAHIE 358 + G VE A + A G + V+GG+IG E + + + I ++ +++ +F E++ +E Sbjct: 301 TVGGVVEGATLEAEGDIVVRGGIIGPGENRDPKGKSGQERALIRAKGNIEALFVENSLVE 360 Query: 359 AADDILVLGNARHCELLAGNEITVGKGNPRTGHIIGGRVEATNIIRANVIGASTTTHTRV 418 A I + G A L+AG ++ VG+ GHIIGG +A + I+A +G+ HT V Sbjct: 361 AGGMIQIAGFAMQSNLVAGTQVVVGQEGTTKGHIIGGSCQAVSRIQAVTLGSHAGVHTTV 420 Query: 419 QVGLDPYLEEKIAIKEQEYTRKVAELDRTIKQQSYYKLNPEKATPELLHETSDKRKALAY 478 VG++P+++EK++ + + ELD K+ Y+ P K +PE ++ET + L Sbjct: 421 SVGVNPHVKEKLSTVKLKIAEAERELDELTKRLDYFASTPLKGSPEQINETRQAKDKLVT 480 Query: 479 EVKVLLEEVSQMKEGMVAAEDARIIVAKAVYEGTELRIGHEVWPVQSDLGGGTAQLFEGD 538 + L E ++++ + A DA I V +AV G + IG + V+ D+ GG E D Sbjct: 481 ALSELKGERKRLEKRLEQASDALIRVERAVLSGVVISIGTKTLEVKDDMEGGITFRLEDD 540 >ref|YP_001232368.1| hypothetical protein Gura_3642 [Geobacter uraniireducens Rf4] gb|ABQ27795.1| protein of unknown function DUF342 [Geobacter uraniireducens Rf4] Length = 544 Score = 303 bits (777), Expect = 4e-80, Method: Composition-based stats. Identities = 188/534 (35%), Positives = 287/534 (53%), Gaps = 1/534 (0%) Query: 9 LSFAFDRASGELSATWQPVQGFPPLTLAFLKQAMTDHGLTKLFFQDSVLNGFVRKAEDAK 68 L+F G+L AT++PV P+ ++ QA+ L+ LF D L+ V++ A Sbjct: 11 LTFQISPDGGKLLATYEPVAQKVPIDTDWVWQALDAQNLSDLFILDDALSNLVKRCAVAA 70 Query: 69 EPVTQVIAERRDGEFSLDVSDDLMTASLTLVPPYGGRA-KSVEVVNAIRAAGITYGILHE 127 + T I ERRDG +L V+ DLM+A +T+ YGG A S +++ A++ I GILH+ Sbjct: 71 DRFTMQIGERRDGTLALTVAPDLMSAYITITSAYGGNAVTSEQILQALQEQKIVSGILHD 130 Query: 128 QLRGALSAGFCNKLVVAQGLMPTPAEPARFESLLEEKEEELADIDEDAVVSYADMGHILL 187 ++ A+ K +A+G P P E ++F SL+ E E D+ V Y ++G I+ Sbjct: 131 EIEKAVGEREVLKREIAKGRSPQPGEDSQFISLIPEMRERCPLADDTDNVDYRNLGGIVS 190 Query: 188 VKVGDPLMRRTPPVPGQDGIDIRGGKVPARPIADVPFSKECIGAEPSEEDPDLLVAIVPG 247 VK GDPLMRR P G G +I G +P D+ F+ G +E D DLL+A + G Sbjct: 191 VKSGDPLMRRYPATKGTPGENILGTPLPTTDGNDIAFTPNLSGTVFAENDSDLLLAAISG 250 Query: 248 QPTVIKNGVKVNPVLDVENVDLSTGNLSFEGTVRVSGDVLTGMKMNVGGDVVINGTVEAA 307 P + +G+ V PV++++NVDLS+GNL FEGTV ++GDV GM++ GD++I G EAA Sbjct: 251 LPVQVDHGIIVEPVINLKNVDLSSGNLHFEGTVNIAGDVKAGMEVKATGDIIIGGVAEAA 310 Query: 308 EIVAGGSVTVKGGVIGHSEGVTAQAGTTAIASRISSQKSVQVMFAESAHIEAADDILVLG 367 +I AGG++ +KGGVIG E + S + + SV F E+A I A DI + Sbjct: 311 KIEAGGNIEIKGGVIGQREVRNQKGELNPDISYVHAGGSVTAQFVENACIIAGRDINIRE 370 Query: 368 NARHCELLAGNEITVGKGNPRTGHIIGGRVEATNIIRANVIGASTTTHTRVQVGLDPYLE 427 A EL AGNE+ VG+ + GHIIGG AT ++ A + G+ TR++VG+DP + Sbjct: 371 VAMKSELTAGNEVIVGEQGMKKGHIIGGVCRATTLVHAIIAGSPANVSTRIEVGVDPSIS 430 Query: 428 EKIAIKEQEYTRKVAELDRTIKQQSYYKLNPEKATPELLHETSDKRKALAYEVKVLLEEV 487 EK++I +Q+ K + T K +Y + NP K + E+ L + Sbjct: 431 EKLSIVKQQLEEKEKRQEETAKTLAYIRDNPAKVDAGMARLKERVYNIQQAEITELTGQK 490 Query: 488 SQMKEGMVAAEDARIIVAKAVYEGTELRIGHEVWPVQSDLGGGTAQLFEGDIRY 541 ++++ + +ARI + + VY G L +G + ++ DL T E I Y Sbjct: 491 KRLQKRLELVNNARIEIERTVYFGVHLMVGDKTLLIEDDLESKTFTRGEEGIAY 544