BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0514.p (326 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773956.1| LysR family transcription regulator protein ... 516 e-144 ref|ZP_02883678.1| transcriptional regulator, LysR family [Burkh... 416 e-114 ref|YP_004228098.1| LysR family transcriptional regulator [Burkh... 409 e-112 ref|YP_003907036.1| LysR family transcriptional regulator [Burkh... 405 e-111 ref|YP_001811097.1| LysR family transcriptional regulator [Burkh... 279 4e-73 >ref|YP_003773956.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ62048.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 306 Score = 516 bits (1328), Expect = e-144, Method: Composition-based stats. Identities = 275/288 (95%), Positives = 282/288 (97%) Query: 21 MLDLAQVRCFVVAATELNFRRAAALLNMTQPPLSRQIHLLEHRLGVQLFERVGRTVRLTT 80 MLDLAQVRCFVVAATELNFRRAAALLNMTQPPLSRQIHLLEHRLGVQLFERVGRTVRLTT Sbjct: 1 MLDLAQVRCFVVAATELNFRRAAALLNMTQPPLSRQIHLLEHRLGVQLFERVGRTVRLTT 60 Query: 81 EGRVFLADASRLLQLSEQAESTVRRASQGKTGRVRVGFTGAAGYELIPELLMQARKSLPE 140 EGRVFLADASRLLQLSEQAESTVRRASQGKTGRVRVGFTGAAGYELIPELLMQAR SLPE Sbjct: 61 EGRVFLADASRLLQLSEQAESTVRRASQGKTGRVRVGFTGAAGYELIPELLMQARTSLPE 120 Query: 141 IDVVLFELISVSQLEAFTANTIDIGFLRPVSSRQPLELQLVDDEPLVLAMPQGHALAAHE 200 IDVVLFELISV+QLEAFTANTIDIGFLRPV+SRQPLELQLVD+E LVLAMPQGHALAA++ Sbjct: 121 IDVVLFELISVAQLEAFTANTIDIGFLRPVASRQPLELQLVDEEALVLAMPQGHALAAYD 180 Query: 201 RIATAQLDGQPFIMHSPTHGKYFYERIMAMLGAADVKPDFTQYIDQSHTILSLVRAGLGV 260 RIAT QLDGQPFIMHSPTHGKYFYERIMAMLGAADVKPDFTQYIDQSHTILSLVRAGLGV Sbjct: 181 RIATTQLDGQPFIMHSPTHGKYFYERIMAMLGAADVKPDFTQYIDQSHTILSLVRAGLGV 240 Query: 261 GILPASAQRFHYDRVEFRPLAGDVPRAEMSMAWRADQENPAVTAFRLM 308 GILPASAQRFHYDRVEFRPLA + PRAEMSMAWR DQ+NPAVTAFRLM Sbjct: 241 GILPASAQRFHYDRVEFRPLADEAPRAEMSMAWRPDQDNPAVTAFRLM 288 >ref|ZP_02883678.1| transcriptional regulator, LysR family [Burkholderia graminis C4D1M] gb|EDT11110.1| transcriptional regulator, LysR family [Burkholderia graminis C4D1M] Length = 312 Score = 416 bits (1069), Expect = e-114, Method: Composition-based stats. Identities = 218/288 (75%), Positives = 245/288 (85%) Query: 21 MLDLAQVRCFVVAATELNFRRAAALLNMTQPPLSRQIHLLEHRLGVQLFERVGRTVRLTT 80 MLDL QVRCFV AATELNFRRAAALL+MTQPPLSRQI LLE LGV+LFER+GRTV+LTT Sbjct: 1 MLDLGQVRCFVAAATELNFRRAAALLHMTQPPLSRQIQLLEDNLGVKLFERIGRTVKLTT 60 Query: 81 EGRVFLADASRLLQLSEQAESTVRRASQGKTGRVRVGFTGAAGYELIPELLMQARKSLPE 140 EGRVFLADA+RLL L+EQAESTVRRAS+GKTGRVR+GFTGAAGYELIPELL+ A LPE Sbjct: 61 EGRVFLADATRLLNLAEQAESTVRRASKGKTGRVRLGFTGAAGYELIPELLVAAADVLPE 120 Query: 141 IDVVLFELISVSQLEAFTANTIDIGFLRPVSSRQPLELQLVDDEPLVLAMPQGHALAAHE 200 IDVVL EL+S +Q+EAF AN ID+GFLRP+ SRQ LE LVD+EPL++A+P+ HAL E Sbjct: 121 IDVVLLELVSAAQIEAFAANAIDLGFLRPLQSRQKLEFLLVDEEPLIVALPRRHALCQFE 180 Query: 201 RIATAQLDGQPFIMHSPTHGKYFYERIMAMLGAADVKPDFTQYIDQSHTILSLVRAGLGV 260 RI QLD QPFIMHSP GKYF++RIM ML A V + QYIDQ+ TILSLVRAGLG+ Sbjct: 181 RIELKQLDEQPFIMHSPAQGKYFHDRIMGMLAAEGVNLNIAQYIDQTPTILSLVRAGLGL 240 Query: 261 GILPASAQRFHYDRVEFRPLAGDVPRAEMSMAWRADQENPAVTAFRLM 308 ILPASAQRFHYD VEFR +AG+ AEMSMAWRADQ+NPAVTAFRLM Sbjct: 241 AILPASAQRFHYDNVEFRHIAGNTIHAEMSMAWRADQDNPAVTAFRLM 288 >ref|YP_004228098.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1001] gb|ADX55038.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1001] Length = 314 Score = 409 bits (1051), Expect = e-112, Method: Composition-based stats. Identities = 217/296 (73%), Positives = 249/296 (84%) Query: 21 MLDLAQVRCFVVAATELNFRRAAALLNMTQPPLSRQIHLLEHRLGVQLFERVGRTVRLTT 80 MLDL QVRCFV AATELNFRRAAA L+MTQPPLSRQI LLE LGV+LFERVGRTV+LTT Sbjct: 1 MLDLGQVRCFVAAATELNFRRAAARLHMTQPPLSRQIQLLEDNLGVKLFERVGRTVKLTT 60 Query: 81 EGRVFLADASRLLQLSEQAESTVRRASQGKTGRVRVGFTGAAGYELIPELLMQARKSLPE 140 EGRVFLADASRLL L+EQAESTVRRAS+GKTGRVR+GFTGAAGYELIPELL+ A +LPE Sbjct: 61 EGRVFLADASRLLNLAEQAESTVRRASKGKTGRVRLGFTGAAGYELIPELLVAAADALPE 120 Query: 141 IDVVLFELISVSQLEAFTANTIDIGFLRPVSSRQPLELQLVDDEPLVLAMPQGHALAAHE 200 +DVVL EL+S +Q+EAF AN ID+GFLRP+ SRQ LE VD+EPL++A+P HAL A Sbjct: 121 VDVVLLELVSAAQIEAFAANAIDLGFLRPLPSRQKLEFVRVDEEPLIVALPTRHALCAFA 180 Query: 201 RIATAQLDGQPFIMHSPTHGKYFYERIMAMLGAADVKPDFTQYIDQSHTILSLVRAGLGV 260 ++ QLDGQPFIM SP GKYF++RIM +L A V + QYIDQ+ TILSLVRAGLG+ Sbjct: 181 QLELKQLDGQPFIMPSPAQGKYFHDRIMGILAAEGVNLNIAQYIDQTPTILSLVRAGLGL 240 Query: 261 GILPASAQRFHYDRVEFRPLAGDVPRAEMSMAWRADQENPAVTAFRLMASEYCAER 316 ILPASAQRFHYD VEFR +AG+ AEMSMAWRADQ+NPAVTAFRLMA+ Y A++ Sbjct: 241 AILPASAQRFHYDNVEFRLIAGNTLHAEMSMAWRADQDNPAVTAFRLMAAGYFADK 296 >ref|YP_003907036.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003] gb|ADN57745.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003] Length = 307 Score = 405 bits (1041), Expect = e-111, Method: Composition-based stats. Identities = 211/297 (71%), Positives = 247/297 (83%) Query: 21 MLDLAQVRCFVVAATELNFRRAAALLNMTQPPLSRQIHLLEHRLGVQLFERVGRTVRLTT 80 MLDL QVRCFV AATELNFRRAAALL+MTQPPLSRQI LLE LGV+LFER+GRTVRLTT Sbjct: 1 MLDLGQVRCFVAAATELNFRRAAALLHMTQPPLSRQIQLLEDNLGVKLFERIGRTVRLTT 60 Query: 81 EGRVFLADASRLLQLSEQAESTVRRASQGKTGRVRVGFTGAAGYELIPELLMQARKSLPE 140 EGRVFLADA+RLL L+EQAE TVRRAS+GKTGRVR+GFTGAAGYELIPELL+ A +LP+ Sbjct: 61 EGRVFLADATRLLNLAEQAEGTVRRASKGKTGRVRLGFTGAAGYELIPELLVAAANALPD 120 Query: 141 IDVVLFELISVSQLEAFTANTIDIGFLRPVSSRQPLELQLVDDEPLVLAMPQGHALAAHE 200 IDVVL EL+S +Q+EAF AN ID+GFLRP+ SRQ LE L+D+EPL++A+P H L E Sbjct: 121 IDVVLLELVSAAQIEAFAANAIDLGFLRPLPSRQKLEFVLIDEEPLIVALPTRHPLCEFE 180 Query: 201 RIATAQLDGQPFIMHSPTHGKYFYERIMAMLGAADVKPDFTQYIDQSHTILSLVRAGLGV 260 +I +LD QPFIM SP GKYF++RIM ML A +V + QYIDQ+ TILSLVRAGLG+ Sbjct: 181 QIELKRLDAQPFIMPSPAQGKYFHDRIMGMLAAENVDVNIAQYIDQTPTILSLVRAGLGL 240 Query: 261 GILPASAQRFHYDRVEFRPLAGDVPRAEMSMAWRADQENPAVTAFRLMASEYCAERA 317 ILPASAQRF Y+ VEFR +AG+ AEM MAWRADQ+NPAV AFR MA++Y A++A Sbjct: 241 AILPASAQRFRYNNVEFRLIAGNAIHAEMGMAWRADQDNPAVIAFRSMAAQYFADKA 297 >ref|YP_001811097.1| LysR family transcriptional regulator [Burkholderia ambifaria MC40-6] gb|ACB66881.1| transcriptional regulator, LysR family [Burkholderia ambifaria MC40-6] Length = 302 Score = 279 bits (714), Expect = 4e-73, Method: Composition-based stats. Identities = 148/297 (49%), Positives = 196/297 (65%) Query: 21 MLDLAQVRCFVVAATELNFRRAAALLNMTQPPLSRQIHLLEHRLGVQLFERVGRTVRLTT 80 M++L Q+RCFV A EL+F RAA L MTQPPLSRQI LLEH LG+ L ER R VRLT Sbjct: 1 MIELNQLRCFVAVAEELHFGRAAKRLFMTQPPLSRQIQLLEHALGIALLERSSRQVRLTA 60 Query: 81 EGRVFLADASRLLQLSEQAESTVRRASQGKTGRVRVGFTGAAGYELIPELLMQARKSLPE 140 G FL DA +L+ S +AE +R + G GR+ +GFT + Y +IP LL A +LP+ Sbjct: 61 AGERFLRDARHILEFSARAEQAAQRVAHGGAGRITLGFTAVSAYRMIPVLLAHAAHALPD 120 Query: 141 IDVVLFELISVSQLEAFTANTIDIGFLRPVSSRQPLELQLVDDEPLVLAMPQGHALAAHE 200 +DV L E++S Q++A + +D GF+R ++R PLE +LV EP+++A+ QG ALAA+E Sbjct: 121 VDVELREMVSTVQIDALASRMLDAGFVRQRAARHPLEYRLVQREPMLVAVAQGSALAAYE 180 Query: 201 RIATAQLDGQPFIMHSPTHGKYFYERIMAMLGAADVKPDFTQYIDQSHTILSLVRAGLGV 260 RI +LD QPFI +SP GKYF++ I M A P++ Y+ Q+HTIL LVRAGLG Sbjct: 181 RIGPDELDRQPFIAYSPNEGKYFHDMISGMFAGAGRLPNYLHYVGQTHTILGLVRAGLGA 240 Query: 261 GILPASAQRFHYDRVEFRPLAGDVPRAEMSMAWRADQENPAVTAFRLMASEYCAERA 317 ++PASA+ H D V FRPLAG AE+ +AWRAD +NPA+ F M + E A Sbjct: 241 ALVPASARELHVDGVVFRPLAGVDVAAELYLAWRADNDNPALPVFNAMVERFLTEGA 297