BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0513.p (317 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773957.1| D-isomer specific 2-hydroxyacid dehydrogenas... 580 e-163 ref|ZP_02883677.1| D-isomer specific 2-hydroxyacid dehydrogenase... 470 e-130 ref|YP_004228099.1| D-isomer specific 2-hydroxyacid dehydrogenas... 466 e-129 ref|YP_003907035.1| D-isomer specific 2-hydroxyacid dehydrogenas... 463 e-128 ref|YP_295970.1| D-isomer specific 2-hydroxyacid dehydrogenase, ... 409 e-112 >ref|YP_003773957.1| D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein [Herbaspirillum seropedicae SmR1] gb|ADJ62049.1| D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein [Herbaspirillum seropedicae SmR1] Length = 348 Score = 580 bits (1494), Expect = e-163, Method: Composition-based stats. Identities = 311/317 (98%), Positives = 312/317 (98%) Query: 1 MKRHVLQLNPILVPAINDKLESLYHMHRLFEQEDKEAYIDRHGAVIEGVITGGHTGISNA 60 MKRHVLQLNPILVPAINDKLESLYHMHRLFEQEDKEAYI RHGAVIEGVITGGHTGISNA Sbjct: 32 MKRHVLQLNPILVPAINDKLESLYHMHRLFEQEDKEAYIARHGAVIEGVITGGHTGISNA 91 Query: 61 LMDRLPALKVVAVNGVGTDAVDLSHARSKGLPVTGTFGALTEDVADLALGLMLAVSRQIC 120 LMD LPALKVVAVNGVGTDAVDL+HARSKGLPVTGTFGALTEDVADLALGLMLAVSRQIC Sbjct: 92 LMDSLPALKVVAVNGVGTDAVDLNHARSKGLPVTGTFGALTEDVADLALGLMLAVSRQIC 151 Query: 121 PGHAFVQRGDWVRHPSPTAIPLSRRLSGKRVGIVGMGKVGRAIAQRAAAFGCPIAYTDLR 180 PGHAFVQRGDWVRHPSPTAIPLSRRLSGKRVGIVGMGKVGRAIAQRAAAFGCPI YTDLR Sbjct: 152 PGHAFVQRGDWVRHPSPTAIPLSRRLSGKRVGIVGMGKVGRAIAQRAAAFGCPITYTDLR 211 Query: 181 AMEDLPYTFQAELLQLARESDVLVLAAAADKAQGIINAAVLDALGREGILINIARGKLVV 240 AMEDLPY FQ ELLQLARESDVLVLAAAADKAQGIINAAVLDALGREGILINIARGKLVV Sbjct: 212 AMEDLPYAFQPELLQLARESDVLVLAAAADKAQGIINAAVLDALGREGILINIARGKLVV 271 Query: 241 EEDLVDALQRGVIAGAGLDVFVDEPNVPAALLQMDQVVLQAHRASATVESRTAMGEMVLA 300 EEDLVDALQRGVIAGAGLDVFVDEPNVPAALLQMDQVVLQAHRASATVESRTAMGEMVLA Sbjct: 272 EEDLVDALQRGVIAGAGLDVFVDEPNVPAALLQMDQVVLQAHRASATVESRTAMGEMVLA 331 Query: 301 SLAQGLAGQRPEGSLTT 317 SLAQGLAGQRPEGSLTT Sbjct: 332 SLAQGLAGQRPEGSLTT 348 >ref|ZP_02883677.1| D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding [Burkholderia graminis C4D1M] gb|EDT11109.1| D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding [Burkholderia graminis C4D1M] Length = 317 Score = 470 bits (1209), Expect = e-130, Method: Composition-based stats. Identities = 248/317 (78%), Positives = 278/317 (87%) Query: 1 MKRHVLQLNPILVPAINDKLESLYHMHRLFEQEDKEAYIDRHGAVIEGVITGGHTGISNA 60 MK ++LQLNPIL+PAIND L S Y +HRLFEQ DK+AYI HGA I GVITGGHTGISN Sbjct: 1 MKPNILQLNPILIPAINDTLASRYTVHRLFEQNDKDAYISEHGASIRGVITGGHTGISND 60 Query: 61 LMDRLPALKVVAVNGVGTDAVDLSHARSKGLPVTGTFGALTEDVADLALGLMLAVSRQIC 120 L++RLPAL+V+AVNGVGTDAVDL+ ARS+G+PVT TFGALTEDVADLA+GLMLAV R+IC Sbjct: 61 LIERLPALEVIAVNGVGTDAVDLAFARSRGIPVTATFGALTEDVADLAIGLMLAVCREIC 120 Query: 121 PGHAFVQRGDWVRHPSPTAIPLSRRLSGKRVGIVGMGKVGRAIAQRAAAFGCPIAYTDLR 180 G+ FV+ G+W ++P P A+PLSRRLSGKRVGIVGMGKVGRAIAQRA+AF CPI+YTDLR Sbjct: 121 AGNEFVKSGNWQKNPHPGALPLSRRLSGKRVGIVGMGKVGRAIAQRASAFNCPISYTDLR 180 Query: 181 AMEDLPYTFQAELLQLARESDVLVLAAAADKAQGIINAAVLDALGREGILINIARGKLVV 240 M+D+P+ F A+LL LAR D LVLAAAADKAQGI+NAAVLDALG+ G LIN+ARGKLVV Sbjct: 181 RMDDVPHPFVADLLSLARGCDFLVLAAAADKAQGIVNAAVLDALGKNGYLINVARGKLVV 240 Query: 241 EEDLVDALQRGVIAGAGLDVFVDEPNVPAALLQMDQVVLQAHRASATVESRTAMGEMVLA 300 E DLV ALQ GVIAGAGLDVFVDEPNVP AL D+VVLQAHRASATVESRTAMGEMVLA Sbjct: 241 ESDLVQALQGGVIAGAGLDVFVDEPNVPPALFDTDRVVLQAHRASATVESRTAMGEMVLA 300 Query: 301 SLAQGLAGQRPEGSLTT 317 SL Q LAGQRPEGSLTT Sbjct: 301 SLEQALAGQRPEGSLTT 317 >ref|YP_004228099.1| D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein [Burkholderia sp. CCGE1001] gb|ADX55039.1| D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein protein [Burkholderia sp. CCGE1001] Length = 317 Score = 466 bits (1200), Expect = e-129, Method: Composition-based stats. Identities = 248/317 (78%), Positives = 279/317 (88%) Query: 1 MKRHVLQLNPILVPAINDKLESLYHMHRLFEQEDKEAYIDRHGAVIEGVITGGHTGISNA 60 MK ++LQLNPILVPAINDKL SLY +HRLFEQ DK+AYI HGA I GVITGGHTGISN Sbjct: 1 MKPNILQLNPILVPAINDKLASLYTVHRLFEQSDKDAYIREHGASIRGVITGGHTGISND 60 Query: 61 LMDRLPALKVVAVNGVGTDAVDLSHARSKGLPVTGTFGALTEDVADLALGLMLAVSRQIC 120 L+ RLPAL+V+AVNGVGTDAVDL+ ARS+G+PVT TFGALTEDVADLA+GLMLAV R+IC Sbjct: 61 LIQRLPALEVIAVNGVGTDAVDLAFARSRGIPVTATFGALTEDVADLAIGLMLAVCREIC 120 Query: 121 PGHAFVQRGDWVRHPSPTAIPLSRRLSGKRVGIVGMGKVGRAIAQRAAAFGCPIAYTDLR 180 G+ FV+ G+W ++P P A+PLS RLSGKR+GIVGMGKVGRAIAQRA+AF CPI YTDLR Sbjct: 121 VGNQFVKSGNWQKNPHPGALPLSHRLSGKRIGIVGMGKVGRAIAQRASAFDCPITYTDLR 180 Query: 181 AMEDLPYTFQAELLQLARESDVLVLAAAADKAQGIINAAVLDALGREGILINIARGKLVV 240 M+D+ + F A+LL LAR D LVLAAAADKAQGI+NAAVLDALG+ G LIN+ARGKLVV Sbjct: 181 RMDDVAHPFVADLLSLARGCDFLVLAAAADKAQGIVNAAVLDALGKNGYLINVARGKLVV 240 Query: 241 EEDLVDALQRGVIAGAGLDVFVDEPNVPAALLQMDQVVLQAHRASATVESRTAMGEMVLA 300 E DLV AL+ GVIAGAGLDVFVDEPNVP AL +MD+VVLQAHRASATVESRTAMG+MVLA Sbjct: 241 ESDLVQALKGGVIAGAGLDVFVDEPNVPPALFEMDRVVLQAHRASATVESRTAMGDMVLA 300 Query: 301 SLAQGLAGQRPEGSLTT 317 SLAQ LAGQRPEGSLTT Sbjct: 301 SLAQALAGQRPEGSLTT 317 >ref|YP_003907035.1| D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein [Burkholderia sp. CCGE1003] gb|ADN57744.1| D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein [Burkholderia sp. CCGE1003] Length = 317 Score = 463 bits (1192), Expect = e-128, Method: Composition-based stats. Identities = 246/317 (77%), Positives = 278/317 (87%) Query: 1 MKRHVLQLNPILVPAINDKLESLYHMHRLFEQEDKEAYIDRHGAVIEGVITGGHTGISNA 60 MK +LQLNPIL+PAIN+KL SLY +HRLFE++DK+AY+ HGA I VITGGHTGISNA Sbjct: 1 MKPDILQLNPILIPAINEKLASLYTVHRLFEKDDKDAYVSEHGASIRAVITGGHTGISNA 60 Query: 61 LMDRLPALKVVAVNGVGTDAVDLSHARSKGLPVTGTFGALTEDVADLALGLMLAVSRQIC 120 L++RLPAL+V+AVNGVGTDAVDL+ ARS+G+PVT TFGALTEDVADLA+GLML+V R+IC Sbjct: 61 LIERLPALEVIAVNGVGTDAVDLAFARSRGIPVTATFGALTEDVADLAIGLMLSVCREIC 120 Query: 121 PGHAFVQRGDWVRHPSPTAIPLSRRLSGKRVGIVGMGKVGRAIAQRAAAFGCPIAYTDLR 180 G+ FV+ G+W ++P P A+PLSRRLSGKRVGIVGMGKVGRAIAQRA AF CPIAYTDLR Sbjct: 121 AGNEFVKSGNWQKNPHPGALPLSRRLSGKRVGIVGMGKVGRAIAQRANAFNCPIAYTDLR 180 Query: 181 AMEDLPYTFQAELLQLARESDVLVLAAAADKAQGIINAAVLDALGREGILINIARGKLVV 240 MED+ + F +LL LAR SD LVLAAAADKAQGI++AAVLDALGR G LIN+ARGKLVV Sbjct: 181 RMEDVGHPFIGDLLSLARGSDFLVLAAAADKAQGIVDAAVLDALGRNGYLINVARGKLVV 240 Query: 241 EEDLVDALQRGVIAGAGLDVFVDEPNVPAALLQMDQVVLQAHRASATVESRTAMGEMVLA 300 E DLV AL+ GVIAGAGLDVFVDEPNVP L MD+VVLQAHRASATVESRTAMGEMVLA Sbjct: 241 ERDLVKALEGGVIAGAGLDVFVDEPNVPTELFGMDRVVLQAHRASATVESRTAMGEMVLA 300 Query: 301 SLAQGLAGQRPEGSLTT 317 SL Q LAGQRPEGSLTT Sbjct: 301 SLEQALAGQRPEGSLTT 317 >ref|YP_295970.1| D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region:D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding [Ralstonia eutropha JMP134] gb|AAZ61126.1| D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region:D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding protein [Ralstonia eutropha JMP134] Length = 317 Score = 409 bits (1052), Expect = e-112, Method: Composition-based stats. Identities = 214/317 (67%), Positives = 257/317 (81%) Query: 1 MKRHVLQLNPILVPAINDKLESLYHMHRLFEQEDKEAYIDRHGAVIEGVITGGHTGISNA 60 MK H+LQLNPIL+PA ND+L +LYH+H+LFE ED+ A++ HG+ I+ VITGGHTGIS A Sbjct: 1 MKPHILQLNPILIPAANDELAALYHVHKLFEVEDQAAWLKEHGSAIQAVITGGHTGISRA 60 Query: 61 LMDRLPALKVVAVNGVGTDAVDLSHARSKGLPVTGTFGALTEDVADLALGLMLAVSRQIC 120 ++++LPALKVVAVNGVGTDAVDL + R +GLPVT T GALTEDVADLA+GL++A R IC Sbjct: 61 MLEQLPALKVVAVNGVGTDAVDLPYCRERGLPVTATLGALTEDVADLAIGLLIAACRNIC 120 Query: 121 PGHAFVQRGDWVRHPSPTAIPLSRRLSGKRVGIVGMGKVGRAIAQRAAAFGCPIAYTDLR 180 G FV+ G W R P P+AIPL+RR SG RVGIVGMG+VGRA+A RAAAFGCPI YTDLR Sbjct: 121 AGDRFVRDGQWERFPQPSAIPLARRFSGMRVGIVGMGRVGRAVATRAAAFGCPIRYTDLR 180 Query: 181 AMEDLPYTFQAELLQLARESDVLVLAAAADKAQGIINAAVLDALGREGILINIARGKLVV 240 M+DLP+ F +L+ LAR SD LVL AAADKA+GI+N AVLDALG G L+N+ARG+LV Sbjct: 181 RMDDLPHAFVPDLVDLARNSDALVLCAAADKAEGIVNGAVLDALGPRGFLVNVARGRLVN 240 Query: 241 EEDLVDALQRGVIAGAGLDVFVDEPNVPAALLQMDQVVLQAHRASATVESRTAMGEMVLA 300 E+DL A++ G IAGAGLDVFVDEP VP AL + D+ LQAHRASAT E+R AM MVL Sbjct: 241 EDDLAQAIEAGRIAGAGLDVFVDEPRVPLALRRSDRTTLQAHRASATWETRAAMIRMVLD 300 Query: 301 SLAQGLAGQRPEGSLTT 317 S+A+GLAG+RP SLTT Sbjct: 301 SVAEGLAGKRPAMSLTT 317