BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0512.p (485 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773958.1| major facilitator superfamily protein [Herba... 823 0.0 ref|YP_003907034.1| major facilitator superfamily protein [Burkh... 681 0.0 ref|YP_004228100.1| major facilitator superfamily protein [Burkh... 678 0.0 ref|ZP_02883676.1| major facilitator superfamily MFS_1 [Burkhold... 671 0.0 ref|YP_003777836.1| D-glucarate permease [Herbaspirillum seroped... 399 e-109 >ref|YP_003773958.1| major facilitator superfamily protein [Herbaspirillum seropedicae SmR1] gb|ADJ62050.1| major facilitator superfamily MFS_1 protein [Herbaspirillum seropedicae SmR1] Length = 484 Score = 823 bits (2127), Expect = 0.0, Method: Composition-based stats. Identities = 459/485 (94%), Positives = 471/485 (97%), Gaps = 1/485 (0%) Query: 1 MNHVDAADPVGRRSSAASASSASSAAPAASAVAPLTQQKPTRYRWVVMGLIFMIWAIACA 60 M+HVDAADPVGR SSAAS + A+SAA A A A + Q KPTRYRWVVMGLIF+IWAIACA Sbjct: 1 MHHVDAADPVGRGSSAASVAPAASAASNAPAAAQIGQ-KPTRYRWVVMGLIFLIWAIACA 59 Query: 61 DRANFGIALPYMKKEYGISNTEAGLIVSLFSFAYGIVQIPVGLMYKRLSEKTTGILFSVF 120 DRANFGIALPYMKKEYGI+NTEAGLIVSLFSFAYG+VQIPVGLMYKRLSEKTTGILFSVF Sbjct: 60 DRANFGIALPYMKKEYGITNTEAGLIVSLFSFAYGLVQIPVGLMYKRLSEKTTGILFSVF 119 Query: 121 MLLTSLFTGLMGTTSSVLLLQLYRVGLGLSEGPLGIGCTNVINRWFPPEEKGTATGLWIA 180 MLLTSLFTGLMGTTSSVLLLQLYRVGLGLSEGPLGIGCTNVINRWFPPEEKGTATGLWIA Sbjct: 120 MLLTSLFTGLMGTTSSVLLLQLYRVGLGLSEGPLGIGCTNVINRWFPPEEKGTATGLWIA 179 Query: 181 ASKLGPLIVPTVCIIVIQLWGWREIFYVFAVPGIFLAILWFFLVTNSPAENRFCNEAERR 240 ASKLGPLIVPTVCIIVIQLWGWREIFYVFAVPGIFLAILWFFLVTNSP+ENRFCNEAERR Sbjct: 180 ASKLGPLIVPTVCIIVIQLWGWREIFYVFAVPGIFLAILWFFLVTNSPSENRFCNEAERR 239 Query: 241 YITQDVAAGPATATAGSRAHVGAQVAPMPWLDGINRTRRVPRLETLRQVFTSWNVIGVAI 300 YITQDVAAGPATATA SRAHVGAQV PMPWLDGINRTRRVPRLETLRQVFTSWNVIGVAI Sbjct: 240 YITQDVAAGPATATASSRAHVGAQVTPMPWLDGINRTRRVPRLETLRQVFTSWNVIGVAI 299 Query: 301 GYGCMIGISNIFMSWIPTYLVTVKGFASVKMGFLASAPFIGAVAGNMLGGVISDRLLGGR 360 GYGCMIGISNIFMSWIPTYLVTVKGFASVKMGFLASAPFIGAVAGNMLGGVISDRLLGGR Sbjct: 300 GYGCMIGISNIFMSWIPTYLVTVKGFASVKMGFLASAPFIGAVAGNMLGGVISDRLLGGR 359 Query: 361 RKPMMLLGALGTAVMTLMLVEAPDSVLYLGAMLMLSGLMLGIGFAGYSAYPMGLATKSTY 420 RKPMMLLGALGTA+MTL+LVEAPDSVLYLGAMLMLSGLMLGIGFAGYSAYPMGLATK+TY Sbjct: 360 RKPMMLLGALGTALMTLLLVEAPDSVLYLGAMLMLSGLMLGIGFAGYSAYPMGLATKATY 419 Query: 421 PTAFGIVNSLGQIGGACAPLAVGMLLDRYDWTSVFLYMVGTSLLCLVLLLSVVEPITVRK 480 P AFGIVNSLGQIGGACAPLAVGMLLDRYDW+SVFLYMVGTSLLCL LLLSVVEPITVRK Sbjct: 420 PAAFGIVNSLGQIGGACAPLAVGMLLDRYDWSSVFLYMVGTSLLCLALLLSVVEPITVRK 479 Query: 481 AGEEA 485 AGEEA Sbjct: 480 AGEEA 484 >ref|YP_003907034.1| major facilitator superfamily protein [Burkholderia sp. CCGE1003] gb|ADN57743.1| major facilitator superfamily MFS_1 [Burkholderia sp. CCGE1003] Length = 464 Score = 681 bits (1756), Expect = 0.0, Method: Composition-based stats. Identities = 365/452 (80%), Positives = 406/452 (89%), Gaps = 5/452 (1%) Query: 28 AASAVAPLTQQKPTRYRWVVMGLIFMIWAIACADRANFGIALPYMKKEYGISNTEAGLIV 87 AA+ PL Q++ T +RWVVMGLIF IWAIACADRANFGIALPY+KKEYGI+NT+AGLIV Sbjct: 9 AAAKTEPLAQKR-TSHRWVVMGLIFCIWAIACADRANFGIALPYLKKEYGITNTQAGLIV 67 Query: 88 SLFSFAYGIVQIPVGLMYKRLSEKTTGILFSVFMLLTSLFTGLMGTTSSVLLLQLYRVGL 147 SLFSFAYG VQIPVGL+YKRLSEKTTG LFS+FM+ TS+FTGLMGTTSSVLLLQ YRVGL Sbjct: 68 SLFSFAYGFVQIPVGLLYKRLSEKTTGFLFSIFMIFTSVFTGLMGTTSSVLLLQAYRVGL 127 Query: 148 GLSEGPLGIGCTNVINRWFPPEEKGTATGLWIAASKLGPLIVPTVCIIVIQLWGWREIFY 207 GLSEGPLGIGCTNVINRWFP +EKGTATGLWIAASKLGPLIVP+VCI+VIQLWGWREIFY Sbjct: 128 GLSEGPLGIGCTNVINRWFPAKEKGTATGLWIAASKLGPLIVPSVCIVVIQLWGWREIFY 187 Query: 208 VFAVPGIFLAILWFFLVTNSPAENRFCNEAERRYITQDVAAGPATATAGSRAHVGAQVAP 267 VFAVPGI L+I+W F+VTNSPAENRFC+EAE+RYI D A R + AP Sbjct: 188 VFAVPGIVLSIVWMFVVTNSPAENRFCSEAEQRYIADDTPRESRGANVSRR----GEAAP 243 Query: 268 MPWLDGINRTRRVPRLETLRQVFTSWNVIGVAIGYGCMIGISNIFMSWIPTYLVTVKGFA 327 +P+LD INRT+RV +LET+RQVF SWN++GVA+GYGCMIGISNIFMSW+PTYLVTVKGFA Sbjct: 244 IPYLDVINRTKRVAQLETIRQVFGSWNILGVALGYGCMIGISNIFMSWMPTYLVTVKGFA 303 Query: 328 SVKMGFLASAPFIGAVAGNMLGGVISDRLLGGRRKPMMLLGALGTAVMTLMLVEAPDSVL 387 SVKMGFLASAPFIGAVAGNMLGGVISDRLLGGRRKPMM+LGALGT + L+L++AP+SV Sbjct: 304 SVKMGFLASAPFIGAVAGNMLGGVISDRLLGGRRKPMMMLGALGTMLTMLLLIDAPNSVA 363 Query: 388 YLGAMLMLSGLMLGIGFAGYSAYPMGLATKSTYPTAFGIVNSLGQIGGACAPLAVGMLLD 447 YLGA LML+GLMLGIGFAGYSAYPMGLATKSTYPTAFGIVN +GQIGGACAPLAVGMLLD Sbjct: 364 YLGATLMLAGLMLGIGFAGYSAYPMGLATKSTYPTAFGIVNCVGQIGGACAPLAVGMLLD 423 Query: 448 RYDWTSVFLYMVGTSLLCLVLLLSVVEPITVR 479 R+ WTSVFLYMVGT+LLCL+LL SVVEP+ R Sbjct: 424 RFSWTSVFLYMVGTALLCLLLLFSVVEPMVAR 455 >ref|YP_004228100.1| major facilitator superfamily protein [Burkholderia sp. CCGE1001] gb|ADX55040.1| major facilitator superfamily MFS_1 [Burkholderia sp. CCGE1001] Length = 470 Score = 678 bits (1749), Expect = 0.0, Method: Composition-based stats. Identities = 356/444 (80%), Positives = 398/444 (89%), Gaps = 1/444 (0%) Query: 38 QKPTRYRWVVMGLIFMIWAIACADRANFGIALPYMKKEYGISNTEAGLIVSLFSFAYGIV 97 QK T +RW+VMGLIF IWAIACADRANFGIALPY+KKEYGI+NT+AGLIVSLFSFAYG V Sbjct: 18 QKRTGHRWIVMGLIFCIWAIACADRANFGIALPYLKKEYGITNTQAGLIVSLFSFAYGFV 77 Query: 98 QIPVGLMYKRLSEKTTGILFSVFMLLTSLFTGLMGTTSSVLLLQLYRVGLGLSEGPLGIG 157 QIPVGL+YKRLSEKTTG LFSVFM+LTS+FTGLMGTTSSV LLQ YRVGLGLSEGPLGIG Sbjct: 78 QIPVGLLYKRLSEKTTGFLFSVFMILTSVFTGLMGTTSSVFLLQAYRVGLGLSEGPLGIG 137 Query: 158 CTNVINRWFPPEEKGTATGLWIAASKLGPLIVPTVCIIVIQLWGWREIFYVFAVPGIFLA 217 CTNVINRWFP +EKGTATGLWIAASKLGPLIVP+VCI+VIQLWGWREIFYVFAVPGI LA Sbjct: 138 CTNVINRWFPAKEKGTATGLWIAASKLGPLIVPSVCIVVIQLWGWREIFYVFAVPGIVLA 197 Query: 218 ILWFFLVTNSPAENRFCNEAERRYITQDVAAGPATATAGSRAHVGAQVAPMPWLDGINRT 277 +LW FLVTNSP +NRFC+EAE+RYI D A R + ++VA +P+LD NRT Sbjct: 198 VLWMFLVTNSPGQNRFCSEAEQRYIADDTPRQGHGQAAPGRP-LTSEVARIPYLDAFNRT 256 Query: 278 RRVPRLETLRQVFTSWNVIGVAIGYGCMIGISNIFMSWIPTYLVTVKGFASVKMGFLASA 337 +RV +LET+R+VF SWN++GVAIGYGCMIGISNIFMSW+PTYLVTVKGFASVKMGFLASA Sbjct: 257 KRVAQLETIREVFGSWNILGVAIGYGCMIGISNIFMSWMPTYLVTVKGFASVKMGFLASA 316 Query: 338 PFIGAVAGNMLGGVISDRLLGGRRKPMMLLGALGTAVMTLMLVEAPDSVLYLGAMLMLSG 397 PF+GAVAGN+LGGVISDRLLGGRRKPMM+LGALGT + L+L++AP+SV YLG LM +G Sbjct: 317 PFMGAVAGNLLGGVISDRLLGGRRKPMMMLGALGTMLTMLLLIDAPNSVAYLGVTLMFAG 376 Query: 398 LMLGIGFAGYSAYPMGLATKSTYPTAFGIVNSLGQIGGACAPLAVGMLLDRYDWTSVFLY 457 LMLGIGFAGYSAYPMGLATKSTYPTAFGIVN +GQIGGACAPLAVG+LLDR+ WTSVFLY Sbjct: 377 LMLGIGFAGYSAYPMGLATKSTYPTAFGIVNCVGQIGGACAPLAVGILLDRFSWTSVFLY 436 Query: 458 MVGTSLLCLVLLLSVVEPITVRKA 481 MVGT+ LCL+LL SVVEPI R+ Sbjct: 437 MVGTAFLCLLLLFSVVEPIAARRG 460 >ref|ZP_02883676.1| major facilitator superfamily MFS_1 [Burkholderia graminis C4D1M] gb|EDT11108.1| major facilitator superfamily MFS_1 [Burkholderia graminis C4D1M] Length = 465 Score = 671 bits (1731), Expect = 0.0, Method: Composition-based stats. Identities = 360/454 (79%), Positives = 402/454 (88%), Gaps = 5/454 (1%) Query: 28 AASAVAPLTQQKPTRYRWVVMGLIFMIWAIACADRANFGIALPYMKKEYGISNTEAGLIV 87 A + APL Q++ T +RW+VMGLIF IWAIACADRANFG ALPY+KKEYGI+NT+AGLIV Sbjct: 9 ADAKAAPLAQKR-TGHRWIVMGLIFCIWAIACADRANFGFALPYLKKEYGITNTQAGLIV 67 Query: 88 SLFSFAYGIVQIPVGLMYKRLSEKTTGILFSVFMLLTSLFTGLMGTTSSVLLLQLYRVGL 147 SLFSFAYG VQIPVGL+YKRLSEKTTG LFSVFM+LTS+FTGLMGTTSSV LLQ YRVGL Sbjct: 68 SLFSFAYGFVQIPVGLLYKRLSEKTTGFLFSVFMILTSVFTGLMGTTSSVFLLQAYRVGL 127 Query: 148 GLSEGPLGIGCTNVINRWFPPEEKGTATGLWIAASKLGPLIVPTVCIIVIQLWGWREIFY 207 GLSEGPLGIGCTNVINRWFP +EKGTATGLWIAASKLGPLIVP+VCI+VIQLWGWREIFY Sbjct: 128 GLSEGPLGIGCTNVINRWFPAKEKGTATGLWIAASKLGPLIVPSVCIVVIQLWGWREIFY 187 Query: 208 VFAVPGIFLAILWFFLVTNSPAENRFCNEAERRYITQDVAAGPATATAGSRAHVGAQVAP 267 VFAVPG+ LA++W LVTNSP+ENRFC+EAE+RYI D ATA R +VA Sbjct: 188 VFAVPGLVLAVVWMVLVTNSPSENRFCSEAEQRYIADDTPRQGRGATASRR----NEVAR 243 Query: 268 MPWLDGINRTRRVPRLETLRQVFTSWNVIGVAIGYGCMIGISNIFMSWIPTYLVTVKGFA 327 +P+LD NRT+ V +LET+RQVF SWN++GVAIGYGCMIGISNIFMSW+PTYLVTVKGFA Sbjct: 244 IPYLDAFNRTKPVAQLETIRQVFGSWNILGVAIGYGCMIGISNIFMSWMPTYLVTVKGFA 303 Query: 328 SVKMGFLASAPFIGAVAGNMLGGVISDRLLGGRRKPMMLLGALGTAVMTLMLVEAPDSVL 387 SVKMGFLASAPFIGAVAGNMLGGVISDRLL GRRKPMM+LGALGT +M L+L++APDSV Sbjct: 304 SVKMGFLASAPFIGAVAGNMLGGVISDRLLAGRRKPMMMLGALGTMLMMLLLIDAPDSVA 363 Query: 388 YLGAMLMLSGLMLGIGFAGYSAYPMGLATKSTYPTAFGIVNSLGQIGGACAPLAVGMLLD 447 YLG LML+GLMLGIGFAGYSAYPMGLATKSTYPTAFGIVN +GQIGGACAPL VG+LLD Sbjct: 364 YLGVALMLAGLMLGIGFAGYSAYPMGLATKSTYPTAFGIVNCVGQIGGACAPLVVGILLD 423 Query: 448 RYDWTSVFLYMVGTSLLCLVLLLSVVEPITVRKA 481 ++ WTSVFLYMVGT+LLCL+LL SV EPI R+ Sbjct: 424 KFSWTSVFLYMVGTALLCLLLLFSVAEPIATRRG 457 >ref|YP_003777836.1| D-glucarate permease [Herbaspirillum seropedicae SmR1] gb|ADJ65928.1| D-glucarate permease protein [Herbaspirillum seropedicae SmR1] Length = 441 Score = 399 bits (1025), Expect = e-109, Method: Composition-based stats. Identities = 213/448 (47%), Positives = 307/448 (68%), Gaps = 13/448 (2%) Query: 31 AVAPLTQQKPTRYRWVVMGLIFMIWAIACADRANFGIALPYMKKEYGISNTEAGLIVSLF 90 A A +K T +RWVV LIF+++ +A ADRAN G+ALP+++KE+ +SNTEAG + S+F Sbjct: 3 AAAIQHTKKKTHFRWVVGALIFIVYTVAAADRANLGVALPFLRKEFVMSNTEAGALASIF 62 Query: 91 SFAYGIVQIPVGLMYKRLSEKTTGILFSVFMLLTSLFTGLMGTTSSVLLLQLYRVGLGLS 150 FAY + Q+P GL Y R +FS+ ML TS+FTGL+GT SS+L L+++R GLGL+ Sbjct: 63 LFAYSLAQLPSGLAYTRFGIPR---VFSLAMLATSVFTGLIGTASSLLALKIFRFGLGLA 119 Query: 151 EGPLGIGCTNVINRWFPPEEKGTATGLWIAASKLGPLIVPTVCIIVIQLWGWREIFYVFA 210 EGPL IG T+ IN WFP EKGT TG+++AA+K GP++VP VC +++ WGWR IFY FA Sbjct: 120 EGPLPIGITSTINNWFPAREKGTMTGIFLAAAKFGPVLVPPVCAVIMYYWGWRHIFYFFA 179 Query: 211 VPGIFLAILWFFLVTNSPAENRFCNEAERRYI--TQDVAAGPATATAGSRAHVGAQVAPM 268 VPG+ L+++W +V N P+E+ + E +I +Q AAG A +R Sbjct: 180 VPGVILSVVWLMVVKNRPSESPHVSAEELEHINDSQGAAAGQDADPAVTR--------DF 231 Query: 269 PWLDGINRTRRVPRLETLRQVFTSWNVIGVAIGYGCMIGISNIFMSWIPTYLVTVKGFAS 328 LD I R +V +ET + VF SWN++G A+GY M I N+ ++WIPTYL++VKG++ Sbjct: 232 ALLDRIIRRSKVATIETTKGVFCSWNIMGAALGYFFMTAIVNVLLAWIPTYLISVKGYSI 291 Query: 329 VKMGFLASAPFIGAVAGNMLGGVISDRLLGGRRKPMMLLGALGTAVMTLMLVEAPDSVLY 388 MG +A+AP++GAV GN+LGG ++DR L RRKP M++ A T +M ++L+ +P L Sbjct: 292 ANMGMVAAAPWVGAVIGNLLGGAMTDRWLEKRRKPAMMMSAFFTTIMMVILINSPADPLL 351 Query: 389 LGAMLMLSGLMLGIGFAGYSAYPMGLATKSTYPTAFGIVNSLGQIGGACAPLAVGMLLDR 448 GA+L+L+G++L IG++ Y YPMG+ +K YP A +VN+LGQ+GGACAPLA G LLD Sbjct: 352 YGALLLLTGILLNIGYSTYMVYPMGMTSKKVYPMACAMVNTLGQLGGACAPLAAGFLLDS 411 Query: 449 YDWTSVFLYMVGTSLLCLVLLLSVVEPI 476 Y W V+++M S+LC + +L++ EP+ Sbjct: 412 YSWNHVWIFMAVCSILCFITILTIREPV 439