BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0510.p (475 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004157931.1| zinc finger swim domain-containing protein [... 344 2e-92 ref|ZP_08875039.1| zinc finger swim domain-containing protein [V... 295 2e-77 ref|YP_004487378.1| zinc finger SWIM domain-containing protein [... 291 2e-76 ref|YP_001565862.1| zinc finger SWIM domain-containing protein [... 290 3e-76 ref|YP_003444713.1| zinc finger SWIM domain-containing protein [... 288 1e-75 >ref|YP_004157931.1| zinc finger swim domain-containing protein [Variovorax paradoxus EPS] gb|ADU39820.1| zinc finger SWIM domain-containing protein [Variovorax paradoxus EPS] Length = 449 Score = 344 bits (882), Expect = 2e-92, Method: Composition-based stats. Identities = 223/458 (48%), Positives = 276/458 (60%), Gaps = 42/458 (9%) Query: 1 MSPDASSTKAAQGLVVPAKWPALGASDEAVWGECQGSGSKPYQTQVHFVAGVPSFKCSCP 60 ++PD +S KAA+GL+ PAKWP LG SDEAVWGECQGSGSKPYQTQV P F+CSCP Sbjct: 11 LAPDDASAKAAKGLLAPAKWPTLGYSDEAVWGECQGSGSKPYQTQVDLSG--PVFRCSCP 68 Query: 61 SRKFPCKHGLALLLFLARDSSAFTAVEPG-WVTEWLSSRRDRAEKKEIKAADQGRPREKM 119 SRKFPCKHGLAL+L A+ ++FTA P WV EW++SRRD+AEKKE +AA+ + Sbjct: 69 SRKFPCKHGLALMLLRAQSGASFTAAAPPPWVAEWIASRRDKAEKKEARAAEPAAAPDP- 127 Query: 120 GGDPAVVLKRQAQRLQRMCAGARELALWLDDLMRQGLATLSSEQEQNWQAMAARMVDAQA 179 A KR AQR +R+ AG +ELA WLDD ++GLA L SEQ+Q W AMAARMVDAQA Sbjct: 128 ----AAAAKRDAQRWKRIEAGVQELARWLDDQTQRGLAALGSEQQQAWGAMAARMVDAQA 183 Query: 180 ARLGQLLTNAMTLVGQGRDWPARLLQRLGSLQLLLDALQRYEQLPASMQAHVRQALGWSY 239 LGQ +T A L+G G WPARLL RLG LQL++DA+ R E L + A +R ALGW Sbjct: 184 PGLGQRITQAAELIGAGEAWPARLLDRLGRLQLIVDAVPRRESLSPATLADLRIALGWPQ 243 Query: 240 DRDEVLVAGERVTDQWRVLANVVTELENRLTEHRVWLQGSHTQRRALLLDYAHATRPVEM 299 DR+ +L GER++D W VL + E + +L E VWLQG + RRALLLDY+H R E Sbjct: 244 DREGLLADGERISDHWLVLGQCIDERDAKLVERHVWLQGRASGRRALLLDYSHGGRGFET 303 Query: 300 GWAVGQLYGAELAFYPGDQALRALAVGAVTPAGTDDAAEGAADVALAQAFAATCCRDEGQ 359 GW G A L FYPG + RAL AE AD + A A D Sbjct: 304 GWVSGSERAAVLCFYPGHASQRAL------------VAELLADAPASTASAT----DTPD 347 Query: 360 EWMAMAKQCLANPWLMQSPVCFRDVRLMHHEPQNTEAGLGSAAVPEWTLHLSADPGGQVR 419 EW MA+Q ANPW P+ + + H Q W L L A P Sbjct: 348 EWQRMAQQIAANPWQPLLPMVWAEAVPARHGDQ-------------WWLRLDAAP----- 389 Query: 420 PSVDLRIVDAHAWQMMALSGGEAFNVFGEWNGERLTPL 457 ++ +++ AWQ++A SGG VFGEW+GE+ PL Sbjct: 390 QALPMQLATQEAWQLLAHSGGAPLRVFGEWDGEQFAPL 427 >ref|ZP_08875039.1| zinc finger swim domain-containing protein [Verminephrobacter sp. At4] Length = 470 Score = 295 bits (754), Expect = 2e-77, Method: Composition-based stats. Identities = 197/462 (42%), Positives = 260/462 (56%), Gaps = 36/462 (7%) Query: 1 MSPDASSTKAAQGLVVPAKW-PALGASDEAVWGECQGSGSKPYQTQVHFVAGVPSFKCSC 59 ++PD +S KAA+GL+ P KW +LG+S+ AVWG CQGSG+KPYQTQV P+FKCSC Sbjct: 28 LAPDEASAKAAKGLLAPGKWGSSLGSSERAVWGACQGSGAKPYQTQVDVTGAAPTFKCSC 87 Query: 60 PSRKFPCKHGLALLLFLARDSSAFTAV-EPGWVTEWLSSRRDRAEKKEIKAADQGRPREK 118 PSRKFPCKHGLAL+L A ++ F +V EP WV +WL SR++RA++K+ + + Sbjct: 88 PSRKFPCKHGLALMLLRADCANLFASVQEPQWVCDWLDSRKERAQRKQDRTDAIALDPQA 147 Query: 119 MGGDPAVVLKRQAQRLQRMCAGARELALWLDDLMRQGLATLSSEQEQNWQAMAARMVDAQ 178 A + KR+ +R +R+ AGA +L +L D + QGLATL + W +AARMVDAQ Sbjct: 148 AAAAQAALAKREGERWKRIEAGADDLERFLMDRIAQGLATLERGNLEAWNQLAARMVDAQ 207 Query: 179 AARLGQLLTNAMTLVGQGRDWPARLLQRLGSLQLLLDALQRYEQLPASMQAHVRQALGWS 238 A LG+LL A VG G WPA +L +G +QL +DAL+ E LP + ++ ALGW+ Sbjct: 208 APGLGELLCRAAAAVGVGPQWPAAVLALMGRMQLCIDALRHREDLPGHLVCDLQAALGWA 267 Query: 239 YDRDEVLVAGERVTDQWRVLANVVTELENRLTEHRVWLQGSHTQRRALLLDYAHATRPVE 298 D D L GERV D W V+ VV E RL+E RVWL G+ + RRAL+LD++H R E Sbjct: 268 ADSDAALAQGERVEDTWLVVGCVVQERAQRLSERRVWLYGARSGRRALVLDFSHNGRGFE 327 Query: 299 MGWAVGQLYGAELAFYPGDQALRALAVGAVTPAGTDDAAEGAADVALAQAFAATCCRDEG 358 W +G LAFYPG LRAL AV +AA+ A L + Sbjct: 328 THWPLGCGVRTTLAFYPGASPLRALPCAAV------EAAQTPAWPHLPSS---------- 371 Query: 359 QEWMAMAKQCLANPWLMQSPVCFRDVRLMHHEPQNTEAGLGSAAVPEWTLH-LSADPGGQ 417 EW A Q ANP+ S V V HE + W LH L +DPG Sbjct: 372 GEWQLAANQLAANPFAPLSLVLLPKVAAARHEDR-------------WWLHMLDSDPG-- 416 Query: 418 VRPSVDLRIVDAHAWQMMALSGGEAFNVFGEWNGERLTPLLA 459 +V L AW ++AL+ G + GEW+G+ L P A Sbjct: 417 --RAVPLETRTDWAWDLLALTHGLPAQLAGEWDGQVLRPSCA 456 >ref|YP_004487378.1| zinc finger SWIM domain-containing protein [Delftia sp. Cs1-4] gb|AEF89023.1| zinc finger SWIM domain-containing protein [Delftia sp. Cs1-4] Length = 481 Score = 291 bits (745), Expect = 2e-76, Method: Composition-based stats. Identities = 212/479 (44%), Positives = 265/479 (55%), Gaps = 42/479 (8%) Query: 1 MSPDASSTKAAQGLVVPAKWPALGASDEAVWGECQGSGSKPYQTQVHFVAGVPSFKCSCP 60 +SPDASS+KAA+GL PAKWP++GA+D AVWGECQGSGSKPYQTQV PSFKCSCP Sbjct: 14 LSPDASSSKAAKGLQSPAKWPSMGANDVAVWGECQGSGSKPYQTQVDLSG--PSFKCSCP 71 Query: 61 SRKFPCKHGLALLLFLARDSSAFTAVEPGWVTEWLSSRRDRAEKKEIKAADQGRPREKMG 120 SRKFPCKHGLAL+L A P WV WL SR+++AEKKE KAA Sbjct: 72 SRKFPCKHGLALMLMRAGGQVPEGVDPPAWVQTWLDSRQEKAEKKEAKAAAAAAEPPP-- 129 Query: 121 GDPAVVLKRQA----QRLQRMCAGARELALWLDDLMRQGLATLSSEQE--QNWQAMAARM 174 DP V K+QA +R ++ AG +EL+LW+ D++R GLA +S+ + Q W MAARM Sbjct: 130 -DPEVAAKQQARREDKRWDKVEAGLQELSLWMQDMVRAGLANQASDTQMRQRWNNMAARM 188 Query: 175 VDAQAARLGQLLTNAMTLVGQGRDWPARLLQRLGSLQLLLDALQRYEQLPASMQAHVRQA 234 VDAQA + + + LV RDWP +L +LG QL++DA++R E L ++A V A Sbjct: 189 VDAQATGMAARIKDCRDLVDSHRDWPRDMLVQLGHWQLIIDAVRRRESLSPEVKADVMAA 248 Query: 235 LGWSYDRDEVLVAGERVTDQWRVLANVVTELENRLTEHRVWLQGSHTQRRALLLDYAHAT 294 LGW D+ EV G+ V D+W V + E E RL E RVWLQG T R AL+LDYA Sbjct: 249 LGWPMDKAEVQARGQLVEDEWLVAGLRMIEREGRLMERRVWLQGQRTGRMALVLDYAQGG 308 Query: 295 RPVEMGWAVGQLYGAELAFYPGDQALRALAVGAVTPAGTDDAAEGAADVALAQAFAATCC 354 R E W G YG L FYPG LRA+A PA D A A+ A Sbjct: 309 RGFESAWVPGHRYGCALNFYPGHAPLRAIAANGNGPALPADGASPLANSA---------- 358 Query: 355 RDEGQEWMAMAKQCLANPWLMQSPVCFRDVRLMHHEPQNTEAGLGSAAVPEWTLHLSADP 414 G + ++ ANP P+C +RL+ + Q A W L A P Sbjct: 359 --GGDVLQLLGQRIAANPLQATQPLCQDRLRLVPAQGQWFAA---------WPQALDASP 407 Query: 415 -----GGQVRPSVDLRIVDAHAWQMMALSGGEAFNVFGEWNG----ERLTPLLAWNAAE 464 V+P V + I DA AW+++ALSGG +FGEW R L AW A E Sbjct: 408 VAPGTAAPVQP-VPVAIDDAEAWRLLALSGGAPMQLFGEWEPGPAVGRWRLLSAWQARE 465 >ref|YP_001565862.1| zinc finger SWIM domain-containing protein [Delftia acidovorans SPH-1] gb|ABX37477.1| zinc finger SWIM domain protein [Delftia acidovorans SPH-1] Length = 481 Score = 290 bits (743), Expect = 3e-76, Method: Composition-based stats. Identities = 212/479 (44%), Positives = 264/479 (55%), Gaps = 42/479 (8%) Query: 1 MSPDASSTKAAQGLVVPAKWPALGASDEAVWGECQGSGSKPYQTQVHFVAGVPSFKCSCP 60 +SPDASS+KAA+GL PAKWP++GA+D AVWGECQGSGSKPYQTQV PSFKCSCP Sbjct: 14 LSPDASSSKAAKGLQSPAKWPSMGANDVAVWGECQGSGSKPYQTQVDLSG--PSFKCSCP 71 Query: 61 SRKFPCKHGLALLLFLARDSSAFTAVEPGWVTEWLSSRRDRAEKKEIKAADQGRPREKMG 120 SRKFPCKHGLAL+L A P WV WL SR+++AEKKE KAA Sbjct: 72 SRKFPCKHGLALMLMRAGGQVPEGGDPPAWVQTWLDSRQEKAEKKEAKAAAAAAEPPP-- 129 Query: 121 GDPAVVLKRQA----QRLQRMCAGARELALWLDDLMRQGLATLSSEQE--QNWQAMAARM 174 DP V K+QA +R ++ AG +EL+LW+ D++R GLA +S+ + Q W MAARM Sbjct: 130 -DPEVAAKQQARREDKRWDKVEAGLQELSLWMQDMVRAGLANQASDTQMRQRWNNMAARM 188 Query: 175 VDAQAARLGQLLTNAMTLVGQGRDWPARLLQRLGSLQLLLDALQRYEQLPASMQAHVRQA 234 VDAQA + + + LV RDWP +L +LG QL++DA++R E L ++A V A Sbjct: 189 VDAQATGMAARIKDCRDLVDSHRDWPRDMLVQLGHWQLIIDAVRRRESLSPEVKADVMAA 248 Query: 235 LGWSYDRDEVLVAGERVTDQWRVLANVVTELENRLTEHRVWLQGSHTQRRALLLDYAHAT 294 LGW D+ EV G+ V D+W V + E E RL E RVWLQG T R AL+LDYA Sbjct: 249 LGWPMDKAEVQARGQLVEDEWLVAGLRMIEREGRLMERRVWLQGQRTGRMALVLDYAQGG 308 Query: 295 RPVEMGWAVGQLYGAELAFYPGDQALRALAVGAVTPAGTDDAAEGAADVALAQAFAATCC 354 R E W G YG L FYPG LRA+A PA D A A A Sbjct: 309 RGFESAWVPGHRYGCALNFYPGHAPLRAIAANGNGPALPADGASPLATSA---------- 358 Query: 355 RDEGQEWMAMAKQCLANPWLMQSPVCFRDVRLMHHEPQNTEAGLGSAAVPEWTLHLSADP 414 G + ++ ANP P+C +RL+ + Q A W L A P Sbjct: 359 --GGDVLQLLGQRIAANPLQATQPLCQDRLRLVPAQGQWFAA---------WPQALDASP 407 Query: 415 -----GGQVRPSVDLRIVDAHAWQMMALSGGEAFNVFGEWNG----ERLTPLLAWNAAE 464 V+P V + I DA AW+++ALSGG +FGEW R L AW A E Sbjct: 408 VTLGTAAPVQP-VPVAIDDAEAWRLLALSGGAPMQLFGEWEPGPAVGRWRLLSAWQARE 465 >ref|YP_003444713.1| zinc finger SWIM domain-containing protein [Allochromatium vinosum DSM 180] gb|ADC63681.1| zinc finger SWIM domain protein [Allochromatium vinosum DSM 180] Length = 449 Score = 288 bits (738), Expect = 1e-75, Method: Composition-based stats. Identities = 201/476 (42%), Positives = 260/476 (54%), Gaps = 40/476 (8%) Query: 1 MSPDASSTKAAQGLVVPAKWPALGASDEAVWGECQGSGSKPYQTQVHFVAGVPSFKCSCP 60 ++PDA+S KAA+GLV+PAKWP LG + AVWGECQGSGSKPYQTQ+ P+F+CSCP Sbjct: 13 LAPDAASVKAAKGLVIPAKWPRLGYDETAVWGECQGSGSKPYQTQIDLSG--PAFRCSCP 70 Query: 61 SRKFPCKHGLALLLFLARDSSAFTAVEP-GWVTEWLSSRRDRAEKKEIKAADQGRPREKM 119 SRKFPCKHGLAL L + FT +P WV EWL+SR R+E+ + K + Sbjct: 71 SRKFPCKHGLALGLLYLQHPDRFTHTDPPDWVGEWLASRAQRSER-QTKRQESAASAGSA 129 Query: 120 GGDPAVVLKRQAQRLQRMCAGARELALWLDDLMRQGLATLSSEQEQNWQAMAARMVDAQA 179 DP +R+A+R +R+ G EL WL D +RQGLA L + E W AMAAR+VDAQ Sbjct: 130 PSDPRAAARREAERQRRLTEGLGELEAWLADRLRQGLAQLQGQSEI-WTAMAARLVDAQL 188 Query: 180 ARLGQLLTNAMTLVGQGRDWPARLLQRLGSLQLLLDALQRYEQLPASMQAHVRQALGWSY 239 L + L A LVG+G WP+RLL LG LQLL+D +R + LPA QA +R ALG + Sbjct: 189 PGLAERLRRAGALVGRGEHWPSRLLAELGRLQLLIDGARRLDSLPAGEQADLRAALGLAL 248 Query: 240 DRDEVLVAGERVTDQWRVLANVVTELENRLTEHRVWLQGSHTQRRALLLDYAHATRPVEM 299 D+ VL GER++D W+VL + E E RL RVWLQG + R AL+LDY+H E Sbjct: 249 DKAVVLETGERLSDDWQVLGVHIAEDE-RLVMRRVWLQGRTSDRPALVLDYSHGQASFEP 307 Query: 300 GWAVGQLYGAELAFYPGDQALRALAVGAVTPAGTDDAAEGAADVALAQAFAATCCRDEGQ 359 VG A LAFYP +RAL V ++ A V LA A Sbjct: 308 MLTVGDTLAATLAFYPSAAPMRALFVDSLRRL---PEAASRLPVPLADALE--------- 355 Query: 360 EWMAMAKQCLANPWLMQSPVCFRDVRLMHHEPQNTEAGLGSAAVPEWTLHLSADPGGQVR 419 +A Q ANPW + V PQ V +W L++ Sbjct: 356 ---RLADQIAANPWPAVRALGLSGV------PQ-------PDTVDDWRLYVGES------ 393 Query: 420 PSVDLRIVDAHAWQMMALSGGEAFNVFGEWNGERLTPLLAWNAAEYWAATHAPQEQ 475 ++ L++ AW ++A +GG +FGEW+GE L PL AW W A A ++ Sbjct: 394 TTLRLQLDTDAAWSLVAAAGGSPVTLFGEWDGESLRPLSAWTPELIWTADTARSDR 449