BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0509.p (402 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004157930.1| hypothetical protein Varpa_5666 [Variovorax ... 235 9e-60 ref|ZP_07945283.1| hypothetical protein HMPREF0179_02641 [Biloph... 223 6e-56 ref|YP_001745487.1| hypothetical protein EcSMS35_3511 [Escherich... 208 2e-51 ref|YP_983955.1| hypothetical protein Pnap_3738 [Polaromonas nap... 203 4e-50 gb|EGB61829.1| hypothetical protein ERJG_02327 [Escherichia coli... 203 4e-50 >ref|YP_004157930.1| hypothetical protein Varpa_5666 [Variovorax paradoxus EPS] gb|ADU39819.1| hypothetical protein Varpa_5666 [Variovorax paradoxus EPS] Length = 518 Score = 235 bits (600), Expect = 9e-60, Method: Composition-based stats. Identities = 164/374 (43%), Positives = 219/374 (58%), Gaps = 12/374 (3%) Query: 19 LDHWDELVKVALVGADRHWTLPPATARDPIASALHERLSAEPSA-ASGQLLRVAGALALA 77 + HW+ L++ ALVG R P A D +A L A S A GQLLRVAGA+A+ Sbjct: 1 MSHWNTLLQSALVGTARQ----PVPAADAMAGEFGGLLQAIQSGDAQGQLLRVAGAVAIG 56 Query: 78 RRVAWLPASDVSVPAEVAAPESRR-RAPPAWLPLLERVMSIGLLRLQVQVLREMDRAGLH 136 RR ++ A +AA + R PA + ++ G LRLQ + L + AGL Sbjct: 57 RRAGFVAPGLSPSDAPIAAADERPVLNDPALQAAIADALASGPLRLQHEGLAAVTAAGLR 116 Query: 137 VPSVKLPLLLQMGAGNTALRGEIGAVIGERGRWLAKCNPQWAYAAGVHEQADTQTLWREG 196 +P LP L G LR + +GERG WLA N W YA G EQAD QT W EG Sbjct: 117 LPHNLLPTALDAGRRAIDLRPSVIPALGERGLWLAARNDDWRYAVGASEQADAQTRWDEG 176 Query: 197 TLEQRRQVLLGQRATDPDAARERLNQEWGSLPAKERAALIECLATGLNPADESFLQIQLG 256 +LEQRR VL+ QR +DP AARERL E LPAKERAAL+ LA + P DE+ + QL Sbjct: 177 SLEQRRAVLVEQRRSDPAAARERLAAELPQLPAKERAALLGALAENIGPDDEALIDAQL- 235 Query: 257 KDRSQDVRRIAAELLSDLPGSAYALRMVERLRPLVGET-----MDAPMQVGEDWQADQLE 311 KDR++DVR+ A ELL LP SA+ R+ L PL+ + ++AP W+ D ++ Sbjct: 236 KDRARDVRQAAVELLQRLPASAHVQRIEAFLAPLLSQVGGAWQLNAPEAADPRWKDDAID 295 Query: 312 IKRPAYEKLGDRAWWLFQLVRRTPLSWWEQHTGRSPAQILVWSMQSDWKDALLRAWSQAA 371 RP ++ LG+RAWWL+QLVR+ PLSWW HTG +PA +L W+ +SDWKDAL R W++A Sbjct: 296 PVRPTHDSLGERAWWLYQLVRQAPLSWWTTHTGMTPAALLGWAEKSDWKDALFRGWNEAI 355 Query: 372 VRQRNAAWCEALIE 385 + + W +A+++ Sbjct: 356 LATADVHWGDAMLD 369 >ref|ZP_07945283.1| hypothetical protein HMPREF0179_02641 [Bilophila wadsworthia 3_1_6] gb|EFV43522.1| hypothetical protein HMPREF0179_02641 [Bilophila wadsworthia 3_1_6] Length = 552 Score = 223 bits (567), Expect = 6e-56, Method: Composition-based stats. Identities = 150/388 (38%), Positives = 200/388 (51%), Gaps = 23/388 (5%) Query: 25 LVKVALVGADRHWTLPPATARDP--IASALHERLSAEPSAASGQLLRVAGALALARRVAW 82 L AL+G D+ PA +P + A+ +A + +LLR AG A+ + Sbjct: 6 LTMQALLGTDKRPPELPADDSEPGRLTQAIAATRDGSENAEALRLLRAAGVQAVCGLAGY 65 Query: 83 LPASDVSVPAEVAAPESRRRA-PPAWLPLLERVMSIGLLRLQVQVLREMDRAGLHVPSVK 141 P S E PE R A + +L +V+S G R++++ R M AG +P Sbjct: 66 QPPRADSALPEPCPPEPRASVDKAAVIDVLRQVLSSGSDRMRLEAFRLMLGAGKVLPPAL 125 Query: 142 LPLLLQMGAGNTALRGEIGAVIGERGRWLAKCNPQWAYAAGVHEQADTQTLWREGTLEQR 201 LP L +G +LRG I + GERGRWL N W A E +W GTL QR Sbjct: 126 LPQALDLGRRTPSLRGPIALIAGERGRWLGGRNAAWNLFATNAENELDPEVWDNGTLMQR 185 Query: 202 RQVLLGQRATDPDAARERLNQEWGSLPAKERAALIECLATGLNPADESFLQIQLGKDRSQ 261 L RA DP ARER S A+ERAA CL GL+ ADE+FL+ L KDRS+ Sbjct: 186 EAYLKSLRAQDPAKARERFETASASFDARERAAFTGCLGEGLSAADEAFLETLLEKDRSK 245 Query: 262 DVRRIAAELLSDLPGSAYALRMVERLRP----------LVGETMDA----------PMQV 301 +VR+ AA LL LP S Y RM ERL L+G A P Sbjct: 246 EVRQAAASLLVRLPESGYVRRMGERLAACIVVPEARGGLIGRIASAFSAPLPAVEPPESF 305 Query: 302 GEDWQADQLEIKRPAYEKLGDRAWWLFQLVRRTPLSWWEQHTGRSPAQILVWSMQSDWKD 361 +W+ D LE K+P YE+ G RAWWL+Q+ R PL+WWE HTG SP ++ W+ ++DW++ Sbjct: 306 DPEWKKDLLEEKKPQYEEFGPRAWWLYQIGRCVPLAWWEAHTGLSPEALIDWAQKTDWRN 365 Query: 362 ALLRAWSQAAVRQRNAAWCEALIELVDK 389 LLR+W +AA R+R+AAW AL+ V K Sbjct: 366 VLLRSWLEAARRERHAAWASALLAHVFK 393 >ref|YP_001745487.1| hypothetical protein EcSMS35_3511 [Escherichia coli SMS-3-5] gb|ACB19074.1| conserved hypothetical protein [Escherichia coli SMS-3-5] Length = 534 Score = 208 bits (529), Expect = 2e-51, Method: Composition-based stats. Identities = 147/399 (36%), Positives = 210/399 (52%), Gaps = 28/399 (7%) Query: 19 LDHWDELVKVALVGADRHWTLPPATARDPIASALHERLSAEPSAASGQLLRVAGALALAR 78 ++ W L + AL+G D+ P+ ++ I L E A ++A QLLR AG LAL Sbjct: 1 MNEWQNLTRTALLGTDKK-AFTPSASQSEIGLLLSEL--ANNTSAEQQLLRSAGVLALCH 57 Query: 79 RVAWLP-ASDVSVPAEVAAPESRRRAPPAWLPLLERVMSIGLLRLQVQVLREMDRAGLHV 137 W+P A D + E+ + PA+ LL ++S G RL L + R L Sbjct: 58 LAGWVPQAIDPAPLPEIDKENAEPINNPAFAGLLHLLLSEGPPRLLWSALDLLVRRQLLP 117 Query: 138 PSVKLPLLLQMGAGNTALRGEIGAVIGERGRWLAKCNPQWAYAAGVHEQADTQTLWREGT 197 P + LP LL GA +LRG + V+G RG WLA+ N W Y + + +W GT Sbjct: 118 PPLLLPALLNYGAQKPSLRGILSNVLGARGCWLAQINADWGYVLASTDAPLDEEMWLHGT 177 Query: 198 LEQRRQVLLGQRATDPDAARERLNQEWGSLPAKERAALIECLATGLNPADESFLQIQLGK 257 EQR Q L R P+ R+RL QE SL A+ERA L+ L G++ DE+FL+ Q Sbjct: 178 SEQRLQYLTQMRIRAPEQGRDRLAQEMSSLDARERAQLLAVLEVGISQHDEAFLE-QTLS 236 Query: 258 DRSQDVRRIAAELLSDLPGSAYALRMVERLRPLVGET----------------------- 294 DRS++VR+ AA LL LP SA+ RM RL PL+ + Sbjct: 237 DRSKEVRQTAARLLCCLPESAWISRMKSRLAPLLSSSPAPETLLERLKGLSGKEKMLRVA 296 Query: 295 MDAPMQVGEDWQADQLEIKRPAYEKLGDRAWWLFQLVRRTPLSWWEQHTGRSPAQILVWS 354 +DAP +W+AD LE +P EKLG RAWWL+Q+V PL WW+ +P ++L W+ Sbjct: 297 LDAPEAFLPEWKADALEETKPKGEKLGQRAWWLYQIVAAVPLDWWQTQLQATPVELLRWA 356 Query: 355 MQSDWKDALLRAWSQAAVRQRNAAWCEALIELVDKFLSL 393 ++DW++ALLRAW A +R++N W +A + L+ +S+ Sbjct: 357 GKTDWQEALLRAWYHAVLREKNPQWAQAFLALLPVGISI 395 >ref|YP_983955.1| hypothetical protein Pnap_3738 [Polaromonas naphthalenivorans CJ2] gb|ABM39034.1| hypothetical protein Pnap_3738 [Polaromonas naphthalenivorans CJ2] Length = 528 Score = 203 bits (517), Expect = 4e-50, Method: Composition-based stats. Identities = 144/383 (37%), Positives = 208/383 (54%), Gaps = 20/383 (5%) Query: 21 HWDELVKVALVGADRHWTLPPATARDPIAS-----ALHERLSAEPSAASGQLLRVAGALA 75 HW L+ A+VG ++ PA + P+ + + + + LL++AG LA Sbjct: 12 HWQSLLPAAMVGTEKMAFTAPALS-GPVGALLAQIEAQQAAQPALAQPALALLQMAGVLA 70 Query: 76 LARRVAWLPASDVSVPAEVAAPESRRRAPPAWLPL-LERVMSIGLLRLQVQVLREMDRAG 134 + R A + + AAPE+ L L L ++ RLQ+++L+ + AG Sbjct: 71 VCERAARQGQASAASAPNSAAPETAPALHAKGLQLSLRWALAEAPPRLQIELLQRLSAAG 130 Query: 135 LHVPSVKLPLLLQMGAGNTALRGEIGAVIGERGRWLAKCNPQWAYAAGVHEQADTQTLWR 194 L +P+ L L L+ G + ALR + V+GERG WLA+ N W YA+G A +T W Sbjct: 131 LRLPTGLLALALEAGQRSVALRPALLPVLGERGMWLARHNSYWRYASGTAASAPLETRWS 190 Query: 195 EGTLEQRRQVLLGQRATDPDAARERLNQEWGSLPAKERAALIECLATGLNPADESFLQIQ 254 EG+L QR ++L QR DP +ARERL LPAK+RA L L GL+ DE+ L + Sbjct: 191 EGSLAQRVELLREQRQLDPASARERLKTALPDLPAKDRAELAAVLIEGLSMDDEALL-VA 249 Query: 255 LGKDRSQDVRRIAAELLSDLPGSAYALRMVERLRPLVGE------------TMDAPMQVG 302 L KDR DVR+ A LL LP SA R + RL+P + + + AP G Sbjct: 250 LCKDRGADVRQTARALLVQLPDSAQTQRAIARLQPCLEKPSTLKSLLGAKWKIQAPEAAG 309 Query: 303 EDWQADQLEIKRPAYEKLGDRAWWLFQLVRRTPLSWWEQHTGRSPAQILVWSMQSDWKDA 362 +DW+AD LE +RP +E +G+RAWWL+QL R+ PL WW QHTG +P ++ W+ + DW +A Sbjct: 310 DDWKADGLEAERPKFETMGERAWWLYQLARQVPLDWWTQHTGLTPDALVQWAAKGDWNEA 369 Query: 363 LLRAWSQAAVRQRNAAWCEALIE 385 L+RAW +AAWC A ++ Sbjct: 370 LVRAWLDVLRTAPDAAWCRAFLD 392 >gb|EGB61829.1| hypothetical protein ERJG_02327 [Escherichia coli M863] gb|EGE62995.1| hypothetical protein ECSTEC7V_3846 [Escherichia coli STEC_7v] Length = 534 Score = 203 bits (516), Expect = 4e-50, Method: Composition-based stats. Identities = 143/399 (35%), Positives = 209/399 (52%), Gaps = 28/399 (7%) Query: 19 LDHWDELVKVALVGADRHWTLPPATARDPIASALHERLSAEPSAASGQLLRVAGALALAR 78 ++ W L + AL+G D+ P+ ++ I L E A ++A QLLR AG LAL Sbjct: 1 MNEWQNLTRTALLGTDKK-AFTPSASQSEIGLLLSEL--ANNTSAEQQLLRSAGVLALCH 57 Query: 79 RVAWLP-ASDVSVPAEVAAPESRRRAPPAWLPLLERVMSIGLLRLQVQVLREMDRAGLHV 137 W+P A D + E+ + PA+ LL +++ G RL L + + L Sbjct: 58 LAGWVPQAIDPAPLPEIDKENAEPINNPAFAGLLHLLLAEGPPRLLWSALDHLVQRQLLS 117 Query: 138 PSVKLPLLLQMGAGNTALRGEIGAVIGERGRWLAKCNPQWAYAAGVHEQADTQTLWREGT 197 P + LP LL G N ++RG + V+G RGRWLA+ N W Y + + +W GT Sbjct: 118 PPLLLPALLNYGVQNPSIRGILPNVLGARGRWLAQINADWRYFLASVDAPLDEEMWLHGT 177 Query: 198 LEQRRQVLLGQRATDPDAARERLNQEWGSLPAKERAALIECLATGLNPADESFLQIQLGK 257 EQR Q L R P+ R+RL QE SL A+ERA L+ L ++ DE+FL+ Q Sbjct: 178 SEQRLQYLTQMRIRAPEQGRDRLAQEMSSLDARERAQLLAVLEVEISQHDEAFLE-QTLS 236 Query: 258 DRSQDVRRIAAELLSDLPGSAYALRMVERLRPLVGET----------------------- 294 DRS++VR+ AA LL LP SA+ RM RL PL+ + Sbjct: 237 DRSKEVRQTAARLLCCLPESAWISRMKSRLAPLLSSSPAPETLLERLKGLSGKEKMLHVA 296 Query: 295 MDAPMQVGEDWQADQLEIKRPAYEKLGDRAWWLFQLVRRTPLSWWEQHTGRSPAQILVWS 354 +DAP +W+AD LE +P EKLG RAWWL+Q+V PL WW+ +P ++L W+ Sbjct: 297 LDAPEAFLPEWKADALEETKPKGEKLGQRAWWLYQIVAAVPLDWWQTQLQATPVELLRWA 356 Query: 355 MQSDWKDALLRAWSQAAVRQRNAAWCEALIELVDKFLSL 393 ++DW+ ALLRAW A +R++N W +A + ++ +S+ Sbjct: 357 GKTDWQKALLRAWYHAVLREKNPQWAQAFLAMLPVGMSI 395