BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0505.p (627 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773960.1| membrane transport protein [Herbaspirillum s... 951 0.0 ref|YP_002965890.1| hypothetical protein MexAM1_META1p5009 [meth... 304 3e-80 ref|YP_003071020.1| hypothetical protein METDI5610 [Methylobacte... 304 3e-80 ref|YP_002423713.1| hypothetical protein Mchl_5020 [Methylobacte... 304 4e-80 ref|YP_001641999.1| hypothetical protein Mext_4560 [Methylobacte... 303 5e-80 >ref|YP_003773960.1| membrane transport protein [Herbaspirillum seropedicae SmR1] gb|ADJ62052.1| membrane transport protein [Herbaspirillum seropedicae SmR1] Length = 626 Score = 951 bits (2459), Expect = 0.0, Method: Composition-based stats. Identities = 536/623 (86%), Positives = 568/623 (91%), Gaps = 2/623 (0%) Query: 5 KTSAFSRLSSTTLLGAAVVLGMLYFGRDILAPLAVAGIASLIILPLVRKLDALGMNRAAA 64 K SA SR +STTLLGAAV LGMLYFGR+ILAPLAVAGIASLIILPLVRKLDALG+NRA A Sbjct: 6 KASALSRFNSTTLLGAAVALGMLYFGREILAPLAVAGIASLIILPLVRKLDALGLNRAGA 65 Query: 65 AMVSVLLVGGCLVALAVVLTFQLVSVTSDLPQYREGIQDKVESVRAMAERPFARLEAELS 124 A+VSVLLVG CLVALAVVL FQLVSVTSDLPQYRE IQDKVESVRAM ERPFARLEAELS Sbjct: 66 AIVSVLLVGSCLVALAVVLAFQLVSVTSDLPQYREAIQDKVESVRAMTERPFARLEAELS 125 Query: 125 AVIPQPMAEPTRNGKKNSRAASAAAAAAATPEADTRMSVRGALRRLFALAWGPIGQAGIV 184 AVIPQP+ E TR+GKK S AA+ A A AA ADTRMSVRGA++RLFALAWGPIGQAGIV Sbjct: 126 AVIPQPVPETTRSGKKASHAAATAPAPAAE--ADTRMSVRGAIKRLFALAWGPIGQAGIV 183 Query: 185 LVLLVFILLEQESLRERLIRLAGLTEMSRTMQALGDAAEGVSRFFFSQFVVNLVFGLIMG 244 LVLLVFILLEQESLRERLIRLAGLTEMSRTMQALGDAAEGVSRFFFSQF+VNL FGLIMG Sbjct: 184 LVLLVFILLEQESLRERLIRLAGLTEMSRTMQALGDAAEGVSRFFFSQFLVNLAFGLIMG 243 Query: 245 MVLAAGGVPHAVLWGALAGVLRFVPYLGALASGLMISVFIAAIDPGWWLALSFLAFYVGL 304 VLAAGGVPHAVLWG LAGVLRFVPYLGALASG+MI++FIAAIDPGWWLALSFLAFY L Sbjct: 244 AVLAAGGVPHAVLWGTLAGVLRFVPYLGALASGVMIAIFIAAIDPGWWLALSFLAFYGCL 303 Query: 305 EVIVANFIEPRVYGHSSGLSPLAVIVSALFWGTLWGPIGLLLSTPLTLCLVVAGRHVAAL 364 EVIVANFIEPR+YGHSSGLSPLAVIVSALFWG+LWGPIGLLLSTPLTLCLVVAGRHVAAL Sbjct: 304 EVIVANFIEPRIYGHSSGLSPLAVIVSALFWGSLWGPIGLLLSTPLTLCLVVAGRHVAAL 363 Query: 365 EPITILLGEAPDMTHAERFYQRALAGESEAIIRDARGHLQKQSFAKYCDQILLPGLALAA 424 EPI+ILLGEAPDM+HAERFYQRALAGES+AIIRDAR HLQKQSFAKYCDQ+LLPGLALAA Sbjct: 364 EPISILLGEAPDMSHAERFYQRALAGESDAIIRDARRHLQKQSFAKYCDQVLLPGLALAA 423 Query: 425 LDLRHGRIEGAQQERLLHSVSQLTEVLTQSPGAPRSLRRRREVPLLNSGVGAHLRELRQA 484 +D R GRIEG QQ RLL S+SQLTE L Q+PG P+SLRRRREVPLLNS VGAHLRELRQA Sbjct: 424 VDFREGRIEGPQQNRLLSSISQLTETLMQTPGTPKSLRRRREVPLLNSSVGAHLRELRQA 483 Query: 485 RLGRWQGSLDVPQGSVVLCGGLRGERDDLLSELLVHALRVTGIDARSITLDQPEGEQPDT 544 RLGRWQGSLDVP GSVVLC GL ERDDLL ELLVHALR+TGIDARSITLD+PE EQPD+ Sbjct: 484 RLGRWQGSLDVPVGSVVLCAGLDHERDDLLCELLVHALRMTGIDARSITLDRPEDEQPDS 543 Query: 545 SKAELVSIVFLVYPVREKLEAWMAVVHDLRENLPHALLVTIRPSFFNEEVEATTVKEQVD 604 SKAELVSIVFLVYP+RE L W V LR +P ALL TIRPSFF+EEVEA VK+QVD Sbjct: 544 SKAELVSIVFLVYPLRESLARWQEQVRTLRAAIPQALLATIRPSFFSEEVEAGVVKDQVD 603 Query: 605 MVLSSFEEGLAFASTHMRPAIKA 627 MVLSSFEEGLAFA+THMRP +KA Sbjct: 604 MVLSSFEEGLAFAATHMRPELKA 626 >ref|YP_002965890.1| hypothetical protein MexAM1_META1p5009 [methylobacterium extorquens AM1] gb|ACS42613.1| conserved hypothetical protein; putative membrane protein [Methylobacterium extorquens AM1] Length = 677 Score = 304 bits (779), Expect = 3e-80, Method: Composition-based stats. Identities = 179/447 (40%), Positives = 267/447 (59%), Gaps = 9/447 (2%) Query: 14 STTLLGAAVVLGMLYFGRDILAPLAVAGIASLIILPLVRKLDALGMNRAAAAMVSVLLVG 73 +++L+ A+++ L+F R++L P+A+A + S ++ PLV L L + RA A +VSVLL Sbjct: 30 ASSLVVFAIIVAGLFFAREVLIPIAIAVLLSFVLGPLVNFLRRLKLGRAFAVLVSVLLAA 89 Query: 74 GCLVALAVVLTFQLVSVTSDLPQYREGIQDKVESVRAMAERPFARLEAELSAVIPQPMAE 133 G + A+ V+ Q+ + D+P+Y+ ++ K+E +RA A ++ I Q E Sbjct: 90 GIIAAVTTVIGVQVAELAQDVPRYQRTVERKIEGLRAGTLGQTMDYIANINRAIHQSGEE 149 Query: 134 PTRNGKKNSRAASAAAAAAATPEADTRMSVRGALRR---------LFALAWGPIGQAGIV 184 + +K + A+ + A PE + V+ RR + A P+ AGIV Sbjct: 150 SKESAEKAKQQAARDSNRKAEPEPPKPLLVQVEERRPGPLELATTVLAPVAQPLATAGIV 209 Query: 185 LVLLVFILLEQESLRERLIRLAGLTEMSRTMQALGDAAEGVSRFFFSQFVVNLVFGLIMG 244 V+L+FIL+++E LR+RLIRLAG +++ RT A+ DAA +SR+F Q +N FG+++G Sbjct: 210 FVVLLFILMQREDLRDRLIRLAGSSDLHRTTVAMDDAARRLSRYFLGQLALNSAFGVVIG 269 Query: 245 MVLAAGGVPHAVLWGALAGVLRFVPYLGALASGLMISVFIAAIDPGWWLALSFLAFYVGL 304 + L GVP VLWG A V+RFVPY+GA S ++ AA+DPGW + LS + + Sbjct: 270 VGLWIIGVPSPVLWGIFALVMRFVPYIGAFLSAVLPIALAAAVDPGWSMVLSTFLLFALV 329 Query: 305 EVIVANFIEPRVYGHSSGLSPLAVIVSALFWGTLWGPIGLLLSTPLTLCLVVAGRHVAAL 364 E IV IEP VYGHS+G+SP +V+VSALFW LWGP+GLLLSTPLT+CLVV GRHV L Sbjct: 330 EPIVGQIIEPLVYGHSTGVSPFSVLVSALFWTWLWGPVGLLLSTPLTVCLVVLGRHVDRL 389 Query: 365 EPITILLGEAPDMTHAERFYQRALAGESEAIIRDARGHLQKQSFAKYCDQILLPGLALAA 424 E + +L P +T E FYQR LA + E A L++ S + Y D ++L GL LA+ Sbjct: 390 EFLDVLFSNRPALTPIENFYQRMLADDPEEAQEHADLILREYSLSAYYDDVVLKGLELAS 449 Query: 425 LDLRHGRIEGAQQERLLHSVSQLTEVL 451 D G + +Q++ + S++ L E L Sbjct: 450 RDAARGVLTPSQKDEIRASITALVEDL 476 >ref|YP_003071020.1| hypothetical protein METDI5610 [Methylobacterium extorquens DM4] emb|CAX27215.1| conserved hypothetical protein; putative membrane protein [Methylobacterium extorquens DM4] Length = 679 Score = 304 bits (779), Expect = 3e-80, Method: Composition-based stats. Identities = 179/447 (40%), Positives = 267/447 (59%), Gaps = 9/447 (2%) Query: 14 STTLLGAAVVLGMLYFGRDILAPLAVAGIASLIILPLVRKLDALGMNRAAAAMVSVLLVG 73 +++L+ A+++ L+F R++L P+A+A + S ++ PLV L L + RA A +VSVLL Sbjct: 30 ASSLVVFAIIVAGLFFAREVLIPIAIAVLLSFVLGPLVNFLRRLKLGRAFAVLVSVLLAA 89 Query: 74 GCLVALAVVLTFQLVSVTSDLPQYREGIQDKVESVRAMAERPFARLEAELSAVIPQPMAE 133 G + A+ V+ Q+ + D+P+Y+ ++ K+E +RA A ++ I Q E Sbjct: 90 GIIAAVTTVIGVQVAELAQDVPRYQRTVERKIEGLRAGTLGQTMDYIANINRAIHQSGEE 149 Query: 134 PTRNGKKNSRAASAAAAAAATPEADTRMSVRGALRR---------LFALAWGPIGQAGIV 184 + +K + A+ + A PE + V+ RR + A P+ AGIV Sbjct: 150 SKESAEKAKQQAARDSNRKAEPEPPKPLLVQVEERRPGPLELATTVLAPVAQPLATAGIV 209 Query: 185 LVLLVFILLEQESLRERLIRLAGLTEMSRTMQALGDAAEGVSRFFFSQFVVNLVFGLIMG 244 V+L+FIL+++E LR+RLIRLAG +++ RT A+ DAA +SR+F Q +N FG+++G Sbjct: 210 FVVLLFILMQREDLRDRLIRLAGSSDLHRTTVAMDDAARRLSRYFLGQLALNSAFGVVIG 269 Query: 245 MVLAAGGVPHAVLWGALAGVLRFVPYLGALASGLMISVFIAAIDPGWWLALSFLAFYVGL 304 + L GVP VLWG A V+RFVPY+GA S ++ AA+DPGW + LS + + Sbjct: 270 VGLWIIGVPSPVLWGIFALVMRFVPYIGAFLSAVLPIALAAAVDPGWSMVLSTFLLFALV 329 Query: 305 EVIVANFIEPRVYGHSSGLSPLAVIVSALFWGTLWGPIGLLLSTPLTLCLVVAGRHVAAL 364 E IV IEP VYGHS+G+SP +V+VSALFW LWGP+GLLLSTPLT+CLVV GRHV L Sbjct: 330 EPIVGQIIEPLVYGHSTGVSPFSVLVSALFWTWLWGPVGLLLSTPLTVCLVVLGRHVDRL 389 Query: 365 EPITILLGEAPDMTHAERFYQRALAGESEAIIRDARGHLQKQSFAKYCDQILLPGLALAA 424 E + +L P +T E FYQR LA + E A L++ S + Y D ++L GL LA+ Sbjct: 390 EFLDVLFSNRPALTPIENFYQRMLADDPEEAQEHADLILRECSLSAYYDDVVLKGLELAS 449 Query: 425 LDLRHGRIEGAQQERLLHSVSQLTEVL 451 D G + +Q++ + S++ L E L Sbjct: 450 RDAARGVLTPSQKDEIRASITALVEDL 476 >ref|YP_002423713.1| hypothetical protein Mchl_5020 [Methylobacterium chloromethanicum CM4] gb|ACK85785.1| protein of unknown function UPF0118 [Methylobacterium chloromethanicum CM4] Length = 679 Score = 304 bits (778), Expect = 4e-80, Method: Composition-based stats. Identities = 179/447 (40%), Positives = 267/447 (59%), Gaps = 9/447 (2%) Query: 14 STTLLGAAVVLGMLYFGRDILAPLAVAGIASLIILPLVRKLDALGMNRAAAAMVSVLLVG 73 +++L+ A+++ L+F R++L P+A+A + S ++ PLV L L + RA A +VSVLL Sbjct: 30 ASSLVVFAIIVAGLFFAREVLIPIAIAVLLSFVLGPLVNFLRRLKLGRAFAVLVSVLLAA 89 Query: 74 GCLVALAVVLTFQLVSVTSDLPQYREGIQDKVESVRAMAERPFARLEAELSAVIPQPMAE 133 G + A+ V+ Q+ + D+P+Y+ ++ K+E +RA A ++ I Q E Sbjct: 90 GIIAAVTTVIGVQVAELAQDVPRYQRTVERKIEGLRAGTLGQTMDYIANINRAIHQSGEE 149 Query: 134 PTRNGKKNSRAASAAAAAAATPEADTRMSVRGALRR---------LFALAWGPIGQAGIV 184 + +K + A+ + A PE + V+ RR + A P+ AGIV Sbjct: 150 SKESAEKAKQQAARDSNRKAEPEPPKPLLVQVEERRPGPLELATTVLAPVAQPLATAGIV 209 Query: 185 LVLLVFILLEQESLRERLIRLAGLTEMSRTMQALGDAAEGVSRFFFSQFVVNLVFGLIMG 244 V+L+FIL+++E LR+RLIRLAG +++ RT A+ DAA +SR+F Q +N FG+++G Sbjct: 210 FVVLLFILMQREDLRDRLIRLAGSSDLHRTTVAMDDAARRLSRYFLGQLALNSAFGVVIG 269 Query: 245 MVLAAGGVPHAVLWGALAGVLRFVPYLGALASGLMISVFIAAIDPGWWLALSFLAFYVGL 304 + L GVP VLWG A V+RFVPY+GA S ++ AA+DPGW + LS + + Sbjct: 270 VGLWIIGVPSPVLWGIFALVMRFVPYIGAFLSAVLPIALAAAVDPGWSMVLSTFLLFALV 329 Query: 305 EVIVANFIEPRVYGHSSGLSPLAVIVSALFWGTLWGPIGLLLSTPLTLCLVVAGRHVAAL 364 E IV IEP VYGHS+G+SP +V+VSALFW LWGP+GLLLSTPLT+CLVV GRHV L Sbjct: 330 EPIVGQIIEPLVYGHSTGVSPFSVLVSALFWTWLWGPVGLLLSTPLTVCLVVLGRHVDRL 389 Query: 365 EPITILLGEAPDMTHAERFYQRALAGESEAIIRDARGHLQKQSFAKYCDQILLPGLALAA 424 E + +L P +T E FYQR LA + E A L++ S + Y D ++L GL LA+ Sbjct: 390 EFLDVLFSNRPALTPIENFYQRMLADDPEEAQEHADLILRECSLSAYYDDVVLKGLELAS 449 Query: 425 LDLRHGRIEGAQQERLLHSVSQLTEVL 451 D G + +Q++ + S++ L E L Sbjct: 450 RDAARGVLTPSQKDEIRASITALVEDL 476 >ref|YP_001641999.1| hypothetical protein Mext_4560 [Methylobacterium extorquens PA1] gb|ABY32928.1| protein of unknown function UPF0118 [Methylobacterium extorquens PA1] Length = 668 Score = 303 bits (777), Expect = 5e-80, Method: Composition-based stats. Identities = 179/447 (40%), Positives = 267/447 (59%), Gaps = 9/447 (2%) Query: 14 STTLLGAAVVLGMLYFGRDILAPLAVAGIASLIILPLVRKLDALGMNRAAAAMVSVLLVG 73 +++L+ A+++ L+F R++L P+A+A + S ++ PLV L L + RA A +VSVLL Sbjct: 19 ASSLVVFAIIVAGLFFAREVLIPIAIAVLLSFVLGPLVNFLRRLKLGRAFAVLVSVLLAA 78 Query: 74 GCLVALAVVLTFQLVSVTSDLPQYREGIQDKVESVRAMAERPFARLEAELSAVIPQPMAE 133 G + A+ V+ Q+ + D+P+Y+ ++ K+E +RA A ++ I Q E Sbjct: 79 GIIAAVTTVIGVQVAELAQDVPRYQRTVERKIEGLRAGTLGQTMDYIANINRAIHQSGEE 138 Query: 134 PTRNGKKNSRAASAAAAAAATPEADTRMSVRGALRR---------LFALAWGPIGQAGIV 184 + +K + A+ + A PE + V+ RR + A P+ AGIV Sbjct: 139 SKESAEKAKQQAARDSNRKAEPEPPKPLLVQVEERRPGPLELATTVLAPVAQPLATAGIV 198 Query: 185 LVLLVFILLEQESLRERLIRLAGLTEMSRTMQALGDAAEGVSRFFFSQFVVNLVFGLIMG 244 V+L+FIL+++E LR+RLIRLAG +++ RT A+ DAA +SR+F Q +N FG+++G Sbjct: 199 FVVLLFILMQREDLRDRLIRLAGSSDLHRTTVAMDDAARRLSRYFLGQLALNSAFGVVIG 258 Query: 245 MVLAAGGVPHAVLWGALAGVLRFVPYLGALASGLMISVFIAAIDPGWWLALSFLAFYVGL 304 + L GVP VLWG A V+RFVPY+GA S ++ AA+DPGW + LS + + Sbjct: 259 VGLWIIGVPSPVLWGIFALVMRFVPYIGAFLSAVLPIALAAAVDPGWSMVLSTFLLFALV 318 Query: 305 EVIVANFIEPRVYGHSSGLSPLAVIVSALFWGTLWGPIGLLLSTPLTLCLVVAGRHVAAL 364 E IV IEP VYGHS+G+SP +V+VSALFW LWGP+GLLLSTPLT+CLVV GRHV L Sbjct: 319 EPIVGQIIEPLVYGHSTGVSPFSVLVSALFWTWLWGPVGLLLSTPLTVCLVVLGRHVDRL 378 Query: 365 EPITILLGEAPDMTHAERFYQRALAGESEAIIRDARGHLQKQSFAKYCDQILLPGLALAA 424 E + +L P +T E FYQR LA + E A L++ S + Y D ++L GL LA+ Sbjct: 379 EFLDVLFSNRPALTPIENFYQRMLADDPEEAQEHADLILRECSLSAYYDDVVLKGLELAS 438 Query: 425 LDLRHGRIEGAQQERLLHSVSQLTEVL 451 D G + +Q++ + S++ L E L Sbjct: 439 RDAARGVLTPSQKDEIRASITALVEDL 465