BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0503.p (318 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773963.1| transcription regulator protein [Herbaspiril... 462 e-128 ref|YP_004230368.1| LysR family transcriptional regulator [Burkh... 338 8e-91 ref|YP_001478646.1| LysR family transcriptional regulator [Serra... 337 2e-90 ref|ZP_06190131.1| transcriptional regulatory protein [Serratia ... 336 3e-90 ref|ZP_02881289.1| transcriptional regulator, LysR family [Burkh... 333 2e-89 >ref|YP_003773963.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ62055.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 332 Score = 462 bits (1188), Expect = e-128, Method: Composition-based stats. Identities = 267/312 (85%), Positives = 284/312 (91%) Query: 1 MPDTDLNLLIALDALIAEASVAGAARRLGLSASAMSRTLTRLRQATGDQLLVRAGRQMVL 60 M TDLNLLIALDALIAEASVAGAARRLGLSASAMSRTLTRLR+ATGD LLVRAGRQMVL Sbjct: 19 MTGTDLNLLIALDALIAEASVAGAARRLGLSASAMSRTLTRLREATGDPLLVRAGRQMVL 78 Query: 61 TPCAEALQERVRNVVHEARSVLRPSVPELDVARLERDFTIRANEGFIEACGAALISAVTS 120 TPCAEAL+ERVRNVVHEARSVLRPSVPELD++RLERDF+IRAN+GFIEA GA LI AVT+ Sbjct: 79 TPCAEALRERVRNVVHEARSVLRPSVPELDLSRLERDFSIRANDGFIEALGAQLIEAVTA 138 Query: 121 EAPLVRLRFAPKVERSPLPLREGSADLEIGVASEMGPEVRLQTLFRDRFVGAVRIGHPLA 180 EAPLVRLRF PKVER P+PLREGSADLEIGVASEMGPEVRLQTLFRDRFVGAVR GHPLA Sbjct: 139 EAPLVRLRFVPKVERGPVPLREGSADLEIGVASEMGPEVRLQTLFRDRFVGAVRTGHPLA 198 Query: 181 SLRRVTAERYCACQHASASPRGDTSSPLDAALAERGLMRKVVAVVPSFPGALAVVRTSDL 240 +LRRV+AERYCA H SASPRG + PL ALA RGL+R+VVAVVPSFPGALAVVRTSDL Sbjct: 199 ALRRVSAERYCAFDHVSASPRGVAAGPLHEALAARGLVRRVVAVVPSFPGALAVVRTSDL 258 Query: 241 VTMVPRSFLTTAGAPRKDGSASGIHLFELPIATDPIIVSLMWHPRVELDPAHRWLRDKVR 300 VTMVP SFLT AGA RKDGSA+GIH+FELP+ +PIIVSLMWHPRVELDPAHRWLRDKVR Sbjct: 259 VTMVPGSFLTRAGAERKDGSAAGIHVFELPLPLEPIIVSLMWHPRVELDPAHRWLRDKVR 318 Query: 301 AVCAGLAQHGAG 312 AVCA LA G Sbjct: 319 AVCAPLAHRRPG 330 >ref|YP_004230368.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1001] gb|ADX57308.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1001] Length = 309 Score = 338 bits (866), Expect = 8e-91, Method: Composition-based stats. Identities = 193/303 (63%), Positives = 226/303 (74%) Query: 1 MPDTDLNLLIALDALIAEASVAGAARRLGLSASAMSRTLTRLRQATGDQLLVRAGRQMVL 60 MP+ DLNLLIAL+ L+ + SVAGAARRLGLSASAMSRTL RLR TGD LLVRAGR+MVL Sbjct: 1 MPEIDLNLLIALETLLDDGSVAGAARRLGLSASAMSRTLARLRATTGDPLLVRAGREMVL 60 Query: 61 TPCAEALQERVRNVVHEARSVLRPSVPELDVARLERDFTIRANEGFIEACGAALISAVTS 120 TP AEA++ER RN +HEAR+VLRPS E D++ L FTIRAN+GF+EA G+ALI A T Sbjct: 61 TPYAEAIRERTRNALHEARAVLRPSRTEPDLSTLRHTFTIRANDGFVEAFGSALIEAATK 120 Query: 121 EAPLVRLRFAPKVERSPLPLREGSADLEIGVASEMGPEVRLQTLFRDRFVGAVRIGHPLA 180 AP VRLRF K E++ PLR+GS DLEIGV MGPEVRLQ LFRDRFVG VR GHPL Sbjct: 121 LAPHVRLRFTSKAEKNATPLRDGSVDLEIGVLGNMGPEVRLQALFRDRFVGVVRKGHPLE 180 Query: 181 SLRRVTAERYCACQHASASPRGDTSSPLDAALAERGLMRKVVAVVPSFPGALAVVRTSDL 240 +T ERY A H AS R + P+D ALA GL R++VAVVP FP ALAV RTSDL Sbjct: 181 REGAITPERYVAFDHVVASRRSGATGPVDDALAALGLERRIVAVVPGFPAALAVARTSDL 240 Query: 241 VTMVPRSFLTTAGAPRKDGSASGIHLFELPIATDPIIVSLMWHPRVELDPAHRWLRDKVR 300 V +VP SF++ A R +++GIH FELP+AT I VS MWHPR+++DP HRWLR V Sbjct: 241 VALVPASFVSAQTAYRDSAASAGIHAFELPVATQEITVSQMWHPRLDVDPLHRWLRQLVL 300 Query: 301 AVC 303 +VC Sbjct: 301 SVC 303 >ref|YP_001478646.1| LysR family transcriptional regulator [Serratia proteamaculans 568] gb|ABV41518.1| transcriptional regulator, LysR family [Serratia proteamaculans 568] Length = 306 Score = 337 bits (863), Expect = 2e-90, Method: Composition-based stats. Identities = 194/302 (64%), Positives = 222/302 (73%), Gaps = 6/302 (1%) Query: 1 MPDTDLNLLIALDALIAEASVAGAARRLGLSASAMSRTLTRLRQATGDQLLVRAGRQMVL 60 M D DLNLLIALDAL++ SVAGAARRL LSASAMSRTL+RLR TGD LLVRAGR+MVL Sbjct: 1 MTDPDLNLLIALDALLSLGSVAGAARRLKLSASAMSRTLSRLRAVTGDPLLVRAGRKMVL 60 Query: 61 TPCAEALQERVRNVVHEARSVLRPSVPELDVARLERDFTIRANEGFIEACGAALISAVTS 120 TP AE ++ER +N V EAR+VLRPSV EL++A LER FT+RANEGF+EA GA LI+A Sbjct: 61 TPYAEEIRERTQNAVFEARAVLRPSVSELNLATLERTFTLRANEGFVEAFGAVLIAAAAK 120 Query: 121 EAPLVRLRFAPKVERSPLPLREGSADLEIGVASEMGPEVRLQTLFRDRFVGAVRIGHPLA 180 EAPLVRL FAPK E++ LREG DLEIGV EMGPE+RLQTLFRDRFV VR GHP Sbjct: 121 EAPLVRLCFAPKPEKNSTHLREGLVDLEIGVLGEMGPEIRLQTLFRDRFVAVVRKGHPFE 180 Query: 181 SLRRVTAERYCACQHASASPRGDTSSPLDAALAERGLMRKVVAVVPSFPGALAVVRTSDL 240 +TA++Y AC H AS RG + P+D ALAE GL RKV AVVPSFP ALAV + SDL Sbjct: 181 QQTEITAQQYAACGHVVASRRGLLTGPVDQALAELGLERKVAAVVPSFPAALAVAQASDL 240 Query: 241 VTMVPRSFLTTAGAPRKDGSASGIHLFELPIATDPIIVSLMWHPRVELDPAHRWLRDKVR 300 V +VP SFL + ++ FELP+ T I VS MWHPR+E DPAHRWLR V Sbjct: 241 VALVPASFLINQPV------GTTLYAFELPVKTQGITVSQMWHPRLEADPAHRWLRQWVL 294 Query: 301 AV 302 V Sbjct: 295 GV 296 >ref|ZP_06190131.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gb|EFA16827.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 311 Score = 336 bits (862), Expect = 3e-90, Method: Composition-based stats. Identities = 196/303 (64%), Positives = 221/303 (72%) Query: 1 MPDTDLNLLIALDALIAEASVAGAARRLGLSASAMSRTLTRLRQATGDQLLVRAGRQMVL 60 M D DLNLLIALD L+AE SVAGAARRLGLSASAMSRTL+RLR ATGD LLVRAGR MVL Sbjct: 2 MTDPDLNLLIALDVLLAEGSVAGAARRLGLSASAMSRTLSRLRTATGDPLLVRAGRNMVL 61 Query: 61 TPCAEALQERVRNVVHEARSVLRPSVPELDVARLERDFTIRANEGFIEACGAALISAVTS 120 TP AE ++ER +N V EAR+VLRPS ELD A LER FT+R N+GF+EA G ALI+A + Sbjct: 62 TPYAEEIRERTQNTVFEARAVLRPSAAELDPATLERTFTLRTNDGFVEAFGPALIAAAAA 121 Query: 121 EAPLVRLRFAPKVERSPLPLREGSADLEIGVASEMGPEVRLQTLFRDRFVGAVRIGHPLA 180 APLVRLRFAPK E+S PLREG DLEIGV +MGPE+RLQ LFRDRFVG R GHPL Sbjct: 122 AAPLVRLRFAPKPEKSSKPLREGLVDLEIGVLGDMGPEIRLQALFRDRFVGVARKGHPLV 181 Query: 181 SLRRVTAERYCACQHASASPRGDTSSPLDAALAERGLMRKVVAVVPSFPGALAVVRTSDL 240 VT E Y AC H AS G + P+D ALAE GL R + AVVPSFP ALAV + SDL Sbjct: 182 LQPDVTLESYVACGHVVASRSGRVAGPVDQALAELGLERNIAAVVPSFPAALAVAQASDL 241 Query: 241 VTMVPRSFLTTAGAPRKDGSASGIHLFELPIATDPIIVSLMWHPRVELDPAHRWLRDKVR 300 V +VP SFL +G + + FELP+ T I VS MWHPR E+DPAHRWLR V Sbjct: 242 VALVPASFLINQPTVSGNGVVAALFAFELPVKTQSITVSQMWHPRSEVDPAHRWLRQLVL 301 Query: 301 AVC 303 +VC Sbjct: 302 SVC 304 >ref|ZP_02881289.1| transcriptional regulator, LysR family [Burkholderia graminis C4D1M] gb|EDT12718.1| transcriptional regulator, LysR family [Burkholderia graminis C4D1M] Length = 309 Score = 333 bits (854), Expect = 2e-89, Method: Composition-based stats. Identities = 194/303 (64%), Positives = 228/303 (75%) Query: 1 MPDTDLNLLIALDALIAEASVAGAARRLGLSASAMSRTLTRLRQATGDQLLVRAGRQMVL 60 MP+TDLNLLIAL+ L+ + SVAGAARRLGLSASAMSRTL RLR TGD LLVRAGR+MVL Sbjct: 1 MPETDLNLLIALETLLDDGSVAGAARRLGLSASAMSRTLARLRATTGDPLLVRAGREMVL 60 Query: 61 TPCAEALQERVRNVVHEARSVLRPSVPELDVARLERDFTIRANEGFIEACGAALISAVTS 120 TP AEA++ER R+ + EAR+VLRPS E D++ L + FTIRAN+GF+EA G+ LI+A Sbjct: 61 TPYAEAIRERTRSALCEARAVLRPSHTEPDLSTLRQTFTIRANDGFVEAFGSPLIAAAIK 120 Query: 121 EAPLVRLRFAPKVERSPLPLREGSADLEIGVASEMGPEVRLQTLFRDRFVGAVRIGHPLA 180 AP VRLRFA K E++ PLR+GSADLEIGV EMGPEVRLQ LFRDRF+G VR GHPL Sbjct: 121 IAPHVRLRFASKPEKNANPLRDGSADLEIGVLGEMGPEVRLQALFRDRFMGVVRKGHPLE 180 Query: 181 SLRRVTAERYCACQHASASPRGDTSSPLDAALAERGLMRKVVAVVPSFPGALAVVRTSDL 240 +TAERY A H AS R + S P+D ALA GL R +VAVVP FP ALAV R SDL Sbjct: 181 RDGGITAERYVAFGHVVASRRANASGPVDDALALLGLERTIVAVVPGFPAALAVARMSDL 240 Query: 241 VTMVPRSFLTTAGAPRKDGSASGIHLFELPIATDPIIVSLMWHPRVELDPAHRWLRDKVR 300 V +VP SF+ A R+ +++ IH FELP+AT I VS MWHPRVE+DP HRWLR V Sbjct: 241 VALVPASFVGAHTACREGAASADIHAFELPVATQQITVSQMWHPRVEVDPVHRWLRQLVL 300 Query: 301 AVC 303 +VC Sbjct: 301 SVC 303