BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0502.p (510 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773964.1| major facilitator superfamily permease [Herb... 640 0.0 ref|ZP_06640426.1| major facilitator family drug resistance tran... 497 e-138 ref|YP_004215495.1| major facilitator superfamily MFS_1 [Rahnell... 491 e-136 ref|YP_003612457.1| putative transport protein [Enterobacter clo... 450 e-124 ref|YP_001631751.1| putative transport protein [Bordetella petri... 446 e-123 >ref|YP_003773964.1| major facilitator superfamily permease [Herbaspirillum seropedicae SmR1] gb|ADJ62056.1| permease of the major facilitator superfamily protein [Herbaspirillum seropedicae SmR1] Length = 493 Score = 640 bits (1650), Expect = 0.0, Method: Composition-based stats. Identities = 416/484 (85%), Positives = 445/484 (91%) Query: 27 MSLFTDLPGDEGLPGVHRRRAMLAVMMATTMAVFDGTIINVALPQISLALQTSAAASVWV 86 M LF+D P DEGLPG RRRAMLAVM ATTMAVFDGTIINVALPQIS ALQTSAA S+WV Sbjct: 10 MELFSDHPNDEGLPGKQRRRAMLAVMTATTMAVFDGTIINVALPQISQALQTSAAVSIWV 69 Query: 87 ANAYLLATAMTLAAFAALSSRLGFRTQFTAGLAVFTLASLGCALSRSVDLLIAMRVLQGL 146 +NAYLLATAMTLAAFAALSSR+GFR QF+AGLAVFTLASLGCALS SV LLI MR+LQGL Sbjct: 70 SNAYLLATAMTLAAFAALSSRIGFRAQFSAGLAVFTLASLGCALSGSVTLLILMRILQGL 129 Query: 147 GGAAMLSIAPAIHRTVFPNRLLGRILGLNAVLVAAGTAVGPVLGGTLLAALGWEWIFLIN 206 GGAAMLSIAPAIHRT+FPNRLLGRILGLNAVLVAA TAVGPVLGGTLLA LGWEWIF IN Sbjct: 130 GGAAMLSIAPAIHRTIFPNRLLGRILGLNAVLVAASTAVGPVLGGTLLAMLGWEWIFAIN 189 Query: 207 VPLGIVAVLLSWSAIPETRKPAQAPFDVAGALWSALAMGAIIMAADTCARFAEPGQGTHA 266 VPLG++AV L+W+A+P+TRKPAQA FD+AGALWSALAMGA+IMAADTCARFAEPGQG+ A Sbjct: 190 VPLGVLAVWLAWNAVPDTRKPAQAAFDLAGALWSALAMGALIMAADTCARFAEPGQGSGA 249 Query: 267 MLEAAAYALVALLAGAAFVRGQRRVLEPLLPLDIFANARFSLAALTSLASFVGQGIAFVA 326 AAAYA+ ALLAG AFVRGQRR +PLLPLDIFAN RFSLAALTSLASFVGQGIAFVA Sbjct: 250 AFTAAAYAVTALLAGLAFVRGQRRAADPLLPLDIFANPRFSLAALTSLASFVGQGIAFVA 309 Query: 327 LPFLFQNGYGYTAFESAALFTPWPLGIVLVAPHAGKLADRHSPALLSSLGLALFTVGLAL 386 LPFLFQN YGYTAFESAALFTPWPLGIVLVAPHAG+LADRHSPALLSSLGLALF +GL L Sbjct: 310 LPFLFQNAYGYTAFESAALFTPWPLGIVLVAPHAGRLADRHSPALLSSLGLALFALGLVL 369 Query: 387 LALLPDHAQAWDIGWRALVCGMGFGFFQSPNNREMLSNVARERSGNASGVLAIMRTFGQC 446 LALLPD AQ WDIGWRALVCGMGFGFFQSPNNREML NV+RERSGNASGVLAIMRTFGQC Sbjct: 370 LALLPDQAQPWDIGWRALVCGMGFGFFQSPNNREMLGNVSRERSGNASGVLAIMRTFGQC 429 Query: 447 LGAALLGTVLAIYTAGAVAQGEMRMSAAQDGEAIRLALWIAVLATALATAVSASRLRRKA 506 LGAALLG +LA+ TA AVAQGE++M+ QDGEAIR+ALW+A ATALATAVSASRLRRKA Sbjct: 430 LGAALLGVILAVRTAAAVAQGELQMNPVQDGEAIRIALWLAAAATALATAVSASRLRRKA 489 Query: 507 QSPA 510 +SPA Sbjct: 490 ESPA 493 >ref|ZP_06640426.1| major facilitator family drug resistance transporter [Serratia odorifera DSM 4582] gb|EFE94528.1| major facilitator family drug resistance transporter [Serratia odorifera DSM 4582] Length = 506 Score = 497 bits (1280), Expect = e-138, Method: Composition-based stats. Identities = 318/503 (63%), Positives = 394/503 (78%), Gaps = 9/503 (1%) Query: 4 MRLPPCLTAGY-SEDLIRSSQAIPMSLFTDLPGDEGLPGVHRRRAMLAVMMATTMAVFDG 62 +RLPP + GY + M LF++ P DEGLPG R AMLAVM TTM VFDG Sbjct: 2 LRLPPLILQGYLGTTNYHYHGVLLMELFSNQPNDEGLPGRERGLAMLAVMTTTTMVVFDG 61 Query: 63 TIINVALPQISLALQTSAAASVWVANAYLLATAMTLAAFAALSSRLGFRTQFTAGLAVFT 122 T++N+ALPQ++ AL SAAA+VWVAN YLL+ AMTLA FAAL+SR+GFR+ F GL VFT Sbjct: 62 TMVNIALPQMAQALGVSAAATVWVANGYLLSAAMTLAIFAALASRIGFRSLFLFGLGVFT 121 Query: 123 LASLGCALSRSVDLLIAMRVLQGLGGAAMLSIAPAIHRTVFPNRLLGRILGLNAVLVAAG 182 LASLGCALS S+++LIAMR+LQG+GGAA LSIAPAI R++FPNRLLGRILG+NA+L+A+ Sbjct: 122 LASLGCALSSSLEMLIAMRLLQGVGGAATLSIAPAILRSIFPNRLLGRILGINALLIASI 181 Query: 183 TAVGPVLGGTLLAALGWEWIFLINVPLGIVAVLLSWSAIPETRKPAQAPFDVAGALWSAL 242 TA+ P++GGTLL+AL W+W+F +N+PLG+ A+ L+W AIP T ++ PFDVAGAL SA Sbjct: 182 TAIAPIVGGTLLSALSWQWLFALNLPLGMAALTLAWRAIPGT-ATSREPFDVAGALLSAA 240 Query: 243 AMGAIIMAADTCARFAEPGQGTHAMLEAAAYALVALLAGAAFVRGQRRVLEPLLPLDIFA 302 ++GA+IM A++ + A +++L A AYALVA +AG AF+R QRR +PLLPL IFA Sbjct: 241 SLGALIMLANSFSDAA--AFSANSLLSALAYALVASIAGVAFIRRQRRAPKPLLPLTIFA 298 Query: 303 NARFSLAALTSLASFVGQGIAFVALPFLFQNGYGYTAFESAALFTPWPLGIVLVAPHAGK 362 + RFSLAALTSLASFV QGI FVALPFLFQ YGY+A SA LFTPWPLGI+L APHAG+ Sbjct: 299 STRFSLAALTSLASFVSQGITFVALPFLFQQVYGYSALFSALLFTPWPLGIMLAAPHAGR 358 Query: 363 LADRHSPALLSSLGLALFTVGLALLALLPDHAQAWDIGWRALVCGMGFGFFQSPNNREML 422 LADRHSPA++S+LGL +F VGL+LLA LP+ A AWDIG R+LVCG+GFG FQSPNNREML Sbjct: 359 LADRHSPAMISTLGLGVFAVGLSLLAWLPEAASAWDIGMRSLVCGIGFGCFQSPNNREML 418 Query: 423 SNVARERSGNASGVLAIMRTFGQCLGAALLGTVLAIYT-AGAVAQGEMRMSAAQDGEAIR 481 SN +RE SG ASGVLAI+RTFGQCLGAAL+G +L++ +GA G + A + +A+R Sbjct: 419 SNASRENSGYASGVLAIVRTFGQCLGAALVGVMLSVAAHSGATGMGIV----AVEAQAVR 474 Query: 482 LALWIAVLATALATAVSASRLRR 504 L+LW+AV T LA A S SRLRR Sbjct: 475 LSLWLAVATTLLAGAFSVSRLRR 497 >ref|YP_004215495.1| major facilitator superfamily MFS_1 [Rahnella sp. Y9602] gb|ADW76368.1| major facilitator superfamily MFS_1 [Rahnella sp. Y9602] Length = 473 Score = 491 bits (1264), Expect = e-136, Method: Composition-based stats. Identities = 299/477 (62%), Positives = 370/477 (77%), Gaps = 14/477 (2%) Query: 27 MSLFTDLPGDEGLPGVHRRRAMLAVMMATTMAVFDGTIINVALPQISLALQTSAAASVWV 86 M LF+D PGDEGLPG R AM AVM+ TMAVFDG+++N+ALPQI+ AL SA A+VWV Sbjct: 1 MELFSDKPGDEGLPGRERGFAMAAVMIMATMAVFDGSMVNIALPQIAHALDISAGAAVWV 60 Query: 87 ANAYLLATAMTLAAFAALSSRLGFRTQFTAGLAVFTLASLGCALSRSVDLLIAMRVLQGL 146 +N YLL+ +MTLA FAAL+SR+GFR F AGL VFTLASLGCALS S+D+LI MRVLQG+ Sbjct: 61 SNGYLLSASMTLAIFAALASRIGFRPLFAAGLTVFTLASLGCALSSSLDMLIIMRVLQGI 120 Query: 147 GGAAMLSIAPAIHRTVFPNRLLGRILGLNAVLVAAGTAVGPVLGGTLLAALGWEWIFLIN 206 G AA LSI PAI R+VFPNRLLGRILGLNA+++A TAV PVLGGT+L+A+ W+W+F IN Sbjct: 121 GAAATLSIGPAILRSVFPNRLLGRILGLNALMIATSTAVAPVLGGTILSAMSWQWLFAIN 180 Query: 207 VPLGIVAVLLSWSAIPETRKPAQAPFDVAGALWSALAMGAIIMAADTCARFAEPGQGTHA 266 +PLGI+AV+L+ +P + PFD AGA+ SA+A+GA+IMAA++ FA PG A Sbjct: 181 IPLGIIAVILTLRVVPSNPASTRQPFDTAGAILSAVALGALIMAAES---FAHPGNDKLA 237 Query: 267 MLEAAAYALVALLAGAAFVRGQRRVLEPLLPLDIFANARFSLAALTSLASFVGQGIAFVA 326 A Y L A++AG AFV QRR +PLLPL +FA+ RF+LAA TSLASFV QGI FVA Sbjct: 238 T--AITYGLTAIIAGVAFVWRQRRAPKPLLPLGMFASTRFTLAAFTSLASFVSQGITFVA 295 Query: 327 LPFLFQNGYGYTAFESAALFTPWPLGIVLVAPHAGKLADRHSPALLSSLGLALFTVGLAL 386 LPFLFQ+ YGY+AF SA LFTPWPLGI+L APHAG+LADR+ A++S++GLA+F VGL L Sbjct: 296 LPFLFQSVYGYSAFVSALLFTPWPLGIILAAPHAGRLADRYPAAIISTVGLAVFAVGLLL 355 Query: 387 LALLPDHAQAWDIGWRALVCGMGFGFFQSPNNREMLSNVARERSGNASGVLAIMRTFGQC 446 LA LP Q WDIG R+ +CG+GFG FQSPNNREMLSN +RE SG ASGVLAIMRTFGQC Sbjct: 356 LAQLPAQPQVWDIGLRSFICGLGFGCFQSPNNREMLSNASRENSGYASGVLAIMRTFGQC 415 Query: 447 LGAALLGTVLAIYTAGAVAQGEMRMSAAQDGEAIRLALWIAVLATALATAVSASRLR 503 LGAA +G +L +Y+A V + +A++++LW+AV+AT LA+ +S SRLR Sbjct: 416 LGAACVGVILTLYSASTV---------LHEAQAVKVSLWVAVMATVLASVISVSRLR 463 >ref|YP_003612457.1| putative transport protein [Enterobacter cloacae subsp. cloacae ATCC 13047] gb|ADF61508.1| putative transport protein [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 469 Score = 450 bits (1157), Expect = e-124, Method: Composition-based stats. Identities = 281/484 (58%), Positives = 351/484 (72%), Gaps = 15/484 (3%) Query: 27 MSLFTDLPGDEGLPGVHRRRAMLAVMMATTMAVFDGTIINVALPQISLALQTSAAASVWV 86 M+LF++ PGDEGLPG R R M AVM T M VFDGT+IN+ALP ++ A+Q A +VW Sbjct: 1 MTLFSNQPGDEGLPGHERARVMAAVMTTTLMGVFDGTMINIALPSMANAMQVPANVAVWF 60 Query: 87 ANAYLLATAMTLAAFAALSSRLGFRTQFTAGLAVFTLASLGCALSRSVDLLIAMRVLQGL 146 AN YLL+ AMTLA FAAL++R+G+R F AGLA FTL SLGCAL+ + ++LI MR+LQG+ Sbjct: 61 ANGYLLSAAMTLAIFAALAARVGYRPVFLAGLATFTLTSLGCALATTPEMLIGMRILQGI 120 Query: 147 GGAAMLSIAPAIHRTVFPNRLLGRILGLNAVLVAAGTAVGPVLGGTLLAALGWEWIFLIN 206 GGAA LSIAPAI R+VFP RLLGRILGL+A+L+AA TA+ PVLGGT+L L W+W+F IN Sbjct: 121 GGAATLSIAPAILRSVFPGRLLGRILGLHALLIAASTAIAPVLGGTILDVLSWQWLFAIN 180 Query: 207 VPLGIVAVLLSWSAIPETRKPAQAPFDVAGALWSALAMGAIIMAADTCARFAEPGQGTHA 266 + G VA+LL+W A+P +PFDV GAL S + +G++IMAA++ A Sbjct: 181 IIPGTVALLLAWKALPRATASDTSPFDVPGALLSVILLGSMIMAANSVENRAHA------ 234 Query: 267 MLEAAAYALVALLAGAAFVRGQRRVLEPLLPLDIFANARFSLAALTSLASFVGQGIAFVA 326 + +ALVA ++ AFV RR P+LP IF+N RF+LAALTSLASFV QGI F+A Sbjct: 235 -ISTVCWALVATVSLIAFVWHIRRARNPILPPVIFSNGRFTLAALTSLASFVSQGITFIA 293 Query: 327 LPFLFQNGYGYTAFESAALFTPWPLGIVLVAPHAGKLADRHSPALLSSLGLALFTVGLAL 386 LPFLFQ+ YGY+ SA LFTPWP+GIVL+APHAG+ AD S L+S+LGL +F VGL L Sbjct: 294 LPFLFQSVYGYSPAISALLFTPWPIGIVLIAPHAGRWADTISAPLISTLGLMIFVVGLIL 353 Query: 387 LALLPDHAQAWDIGWRALVCGMGFGFFQSPNNREMLSNVARERSGNASGVLAIMRTFGQC 446 LA LP AWDI R+LVCG+GFG FQSPNNREMLSNVARE + ASGVL+I+RTFGQC Sbjct: 354 LATLPAGPSAWDICLRSLVCGIGFGCFQSPNNREMLSNVAREYASYASGVLSIVRTFGQC 413 Query: 447 LGAALLGTVLAIYTAGAVAQGEMRMSAAQDGEAIRLALWIAVLATALATAVSASRLRRKA 506 LGAA++G +LA TAG+ Q D A+ +ALWIAV+A+ + S SRLRR Sbjct: 414 LGAAVVGVLLAA-TAGSDHQ-------MLDDGAVHIALWIAVIASTASVLFSVSRLRRAR 465 Query: 507 QSPA 510 Q+ A Sbjct: 466 QATA 469 >ref|YP_001631751.1| putative transport protein [Bordetella petrii DSM 12804] emb|CAP43483.1| putative transport protein [Bordetella petrii] Length = 467 Score = 446 bits (1146), Expect = e-123, Method: Composition-based stats. Identities = 291/478 (60%), Positives = 354/478 (74%), Gaps = 21/478 (4%) Query: 27 MSLFTDLPGDEGLPGVHRRRAMLAVMMATTMAVFDGTIINVALPQISLALQTSAAASVWV 86 M LFTD GD+GLPG R M A+M AT M VFDG++IN+ALP++S ALQ AA +VW Sbjct: 1 MELFTDRQGDDGLPGRERAAVMAALMTATVMVVFDGSVINIALPKMSGALQVPAAVAVWF 60 Query: 87 ANAYLLATAMTLAAFAALSSRLGFRTQFTAGLAVFTLASLGCALSRSVDLLIAMRVLQGL 146 ANAYLL+ AMTLA FAALS RLGFR F +GLA+FTLAS GCAL+ + LIAMRVLQGL Sbjct: 61 ANAYLLSVAMTLAIFAALSRRLGFRRVFLSGLALFTLASAGCALAPNAGALIAMRVLQGL 120 Query: 147 GGAAMLSIAPAIHRTVFPNRLLGRILGLNAVLVAAGTAVGPVLGGTLLAALGWEWIFLIN 206 GGAA++SI PAI R+ FP+RLLGRILGLNA+L+AA TA+ P++GGTLL A GW W+F +N Sbjct: 121 GGAAVVSIGPAILRSAFPSRLLGRILGLNALLIAASTAIAPIVGGTLLDAWGWRWLFALN 180 Query: 207 VPLGIVAVLLSWSAIPETRKPAQAPFDVAGALWSALAMGAIIMAADTCARFAEPGQGTHA 266 + G +A+ ++ AIP A+ FD GA+ SA +GA++MAA THA Sbjct: 181 IVPGAMALAIAMRAIPAGPAAARETFDTLGAVLSAALVGALVMAA------------THA 228 Query: 267 -MLEAAAYALVALLAGAAFVRGQRRVLEPLLPLDIFANARFSLAALTSLASFVGQGIAFV 325 M + YAL ALLAGA F+ RR +PLLP IFA+ARF+LAALTS+ASFVGQG+ FV Sbjct: 229 AMPDGRWYALAALLAGAGFIWRMRRASQPLLPPVIFASARFTLAALTSMASFVGQGMTFV 288 Query: 326 ALPFLFQNGYGYTAFESAALFTPWPLGIVLVAPHAGKLADRHSPALLSSLGLALFTVGLA 385 ALPFLFQN YGY AFE+A LFTPWP+GIVL APHAG+LADR+SPAL+S++GL L T GL Sbjct: 289 ALPFLFQNIYGYNAFETALLFTPWPVGIVLAAPHAGRLADRYSPALISTVGLFLLTAGLV 348 Query: 386 LLALLPDHAQAWDIGWRALVCGMGFGFFQSPNNREMLSNVARERSGNASGVLAIMRTFGQ 445 LA LP+ Q W IG R L+CG+GFG FQSPNNREMLSNV+RE SG ASGVLAIMRT GQ Sbjct: 349 SLAFLPEQPQVWQIGMRCLLCGIGFGCFQSPNNREMLSNVSRENSGYASGVLAIMRTLGQ 408 Query: 446 CLGAALLGTVLAIYTAGAVAQGEMRMSAAQDGEAIRLALWIAVLATALATAVSASRLR 503 CLG AL+G +LA+Y G + + +A++++LWIAV TALA +S SRLR Sbjct: 409 CLGTALVGLLLAVYARGD--------AIVHERQAVQMSLWIAVAVTALAVGLSLSRLR 458