BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0501.p (549 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773965.1| methyl-accepting chemotaxis transducer trans... 664 0.0 ref|YP_002909140.1| methyl-accepting chemotaxis sensory transduc... 445 e-122 ref|YP_002908812.1| methyl-accepting chemotaxis sensory transduc... 437 e-120 ref|YP_004362535.1| Methyl-accepting chemotaxis sensory transduc... 436 e-120 ref|YP_002908602.1| methyl-accepting chemotaxis sensory transduc... 432 e-119 >ref|YP_003773965.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ62057.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 547 Score = 664 bits (1712), Expect = 0.0, Method: Composition-based stats. Identities = 453/524 (86%), Positives = 488/524 (93%) Query: 1 MGKLKVVTRLALGFGLILVFLLGISVLGMAGMSRINDALTDITSVNNAETKLVTVLRNAL 60 MG LKVVTRLALGFGLILVFLL IS LG+ GM+R+NDALTDIT VNNAE KLVT LRNAL Sbjct: 1 MGNLKVVTRLALGFGLILVFLLSISALGLYGMARVNDALTDITDVNNAEIKLVTALRNAL 60 Query: 61 SQRAIAIRNIALLEDQESMRVESQTLARQEKIYADALVALDKMFSAEAATTEREKQLLAQ 120 SQRA+AIRNIALL++Q M+VESQTLARQEK+YADA ALDKMF+ EAATTERE+QLL Q Sbjct: 61 SQRALAIRNIALLDEQADMQVESQTLARQEKLYADAYAALDKMFTTEAATTERERQLLVQ 120 Query: 121 IKADEAATVPLMAKALQLGLDNKPVDAVKVLITEVRPKQQAWIKSLTELADFEDQLNEEA 180 IK DEAAT+PLMAKA+QLGL+NK +A K+LIT+VRPKQQAWIKSLTELA+FEDQLN+EA Sbjct: 121 IKNDEAATLPLMAKAVQLGLENKAAEAGKMLITQVRPKQQAWIKSLTELAEFEDQLNDEA 180 Query: 181 AADARTTYAWLRTVMLSAVALALLVGVAASALIARSILRQLGAEPSEAQAIAREIASGDL 240 A AR TYAWLR V ++A ALLVGVAASALIARSILRQLGAEPSEAQA+AR+IASGDL Sbjct: 181 ATSARNTYAWLRMVTVAAALAALLVGVAASALIARSILRQLGAEPSEAQAVARDIASGDL 240 Query: 241 TATVRLRDGDGSSLMASIEQMRYQLNVIAHGIKSAAETISVASGQIAQGNFDLSQRTEEQ 300 TATVR+R+GD SSLMASIEQMRYQLNVIAHGIKSAAETISVASGQIAQGNFDLSQRTEEQ Sbjct: 241 TATVRVREGDSSSLMASIEQMRYQLNVIAHGIKSAAETISVASGQIAQGNFDLSQRTEEQ 300 Query: 301 AASLEETAASMEELTTTVRQNTSHAAEALRLSGGATETAATGSEAFDRVVSTMDKISASS 360 AASLEETAASMEELTTTVRQNT HA+EALRLSGGATETAA GS+AFDRVV TMD+I+ASS Sbjct: 301 AASLEETAASMEELTTTVRQNTQHASEALRLSGGATETAAAGSQAFDRVVQTMDRITASS 360 Query: 361 GKMADIIGVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAVASKEIK 420 KM+DII VIEGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAVA+KEIK Sbjct: 361 SKMSDIISVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAVAAKEIK 420 Query: 421 DLIGESMAHVGAGSQLVASAGQQMNGIVASVQRFGEIMNEIATATQEQGSGIEQINTAIV 480 +LIGESM+HVGAGSQLV+ AGQQM IVASVQRFGEIMN IATATQEQGSGIEQINTA+V Sbjct: 421 ELIGESMSHVGAGSQLVSDAGQQMAQIVASVQRFGEIMNNIATATQEQGSGIEQINTAMV 480 Query: 481 QMDQVTQQNAALVEEASAAAQSLSQQASGLLKVVSIFKIRQDAS 524 QMDQVTQQNAALVEEASAAAQSLSQQASGLLKVVS+FKIRQD S Sbjct: 481 QMDQVTQQNAALVEEASAAAQSLSQQASGLLKVVSVFKIRQDRS 524 >ref|YP_002909140.1| methyl-accepting chemotaxis sensory transducer [Burkholderia glumae BGR1] gb|ACR31905.1| Methyl-accepting chemotaxis sensory transducer [Burkholderia glumae BGR1] Length = 573 Score = 445 bits (1145), Expect = e-122, Method: Composition-based stats. Identities = 304/534 (56%), Positives = 393/534 (73%) Query: 1 MGKLKVVTRLALGFGLILVFLLGISVLGMAGMSRINDALTDITSVNNAETKLVTVLRNAL 60 M + V TRL GFGL+ LL ++ +G G+S++N L DI VNN ETKL LR+++ Sbjct: 1 MKNMTVSTRLIAGFGLLTALLLAVAAIGFYGLSQLNGTLDDIARVNNTETKLANRLRSSI 60 Query: 61 SQRAIAIRNIALLEDQESMRVESQTLARQEKIYADALVALDKMFSAEAATTEREKQLLAQ 120 RAIA+RN+ALL D + M E++ +++QE+IYADA L +MF+ E TTEREK LLAQ Sbjct: 61 QDRAIAVRNLALLSDAQDMAKEAERISKQEQIYADAYQKLSQMFADEPGTTEREKTLLAQ 120 Query: 121 IKADEAATVPLMAKALQLGLDNKPVDAVKVLITEVRPKQQAWIKSLTELADFEDQLNEEA 180 +K DEAA +P + KA QLGL N A + L+ RP Q+ W+ ELADFEDQLN++A Sbjct: 121 LKQDEAAALPPLRKAAQLGLSNDRAGATQELLQNARPPQRKWLARAIELADFEDQLNDQA 180 Query: 181 AADARTTYAWLRTVMLSAVALALLVGVAASALIARSILRQLGAEPSEAQAIAREIASGDL 240 A + Y+ +R ++ + VA +LLV + LI RSILRQLG EP AQ++A EIA+G+L Sbjct: 181 QGSAVSLYSSVRVLIAAIVAASLLVAAVTAVLITRSILRQLGGEPGLAQSVAAEIANGNL 240 Query: 241 TATVRLRDGDGSSLMASIEQMRYQLNVIAHGIKSAAETISVASGQIAQGNFDLSQRTEEQ 300 + L+ GD +SLMAS+E MR +L I HGIK++AE+ISVA+ Q+AQGN DLSQRTEEQ Sbjct: 241 MVDLHLKPGDSTSLMASLEAMRARLTSIVHGIKTSAESISVAANQVAQGNVDLSQRTEEQ 300 Query: 301 AASLEETAASMEELTTTVRQNTSHAAEALRLSGGATETAATGSEAFDRVVSTMDKISASS 360 AASLEETAASMEELT+TV+ NT +A + L+ A++TA++G + +VV TMD I++SS Sbjct: 301 AASLEETAASMEELTSTVKHNTDNARQGSTLAVTASQTASSGGDVVRQVVGTMDDIASSS 360 Query: 361 GKMADIIGVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAVASKEIK 420 K+A+II VIEGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVR+LAQRSAVA+KEIK Sbjct: 361 RKVAEIISVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRTLAQRSAVAAKEIK 420 Query: 421 DLIGESMAHVGAGSQLVASAGQQMNGIVASVQRFGEIMNEIATATQEQGSGIEQINTAIV 480 +LI S++HV AGSQLVA AG M+ IV SV+R +IM EIA+A+ EQ +GIEQ+N A+ Sbjct: 421 ELIETSVSHVAAGSQLVAGAGTTMDEIVRSVKRVSDIMGEIASASAEQSTGIEQVNVAVA 480 Query: 481 QMDQVTQQNAALVEEASAAAQSLSQQASGLLKVVSIFKIRQDASHHGCGQQQRQ 534 QMD+VTQQNAALVE+A+AAAQS++ QA L VSIF++ A +RQ Sbjct: 481 QMDEVTQQNAALVEQATAAAQSMADQAENLRATVSIFRVDARAQTEPAAAVKRQ 534 >ref|YP_002908812.1| methyl-accepting chemotaxis sensory transducer [Burkholderia glumae BGR1] gb|ACR31577.1| Methyl-accepting chemotaxis sensory transducer [Burkholderia glumae BGR1] Length = 573 Score = 437 bits (1125), Expect = e-120, Method: Composition-based stats. Identities = 297/546 (54%), Positives = 391/546 (71%) Query: 1 MGKLKVVTRLALGFGLILVFLLGISVLGMAGMSRINDALTDITSVNNAETKLVTVLRNAL 60 M + V TRL GFGL+ LL ++ +G G+S++N L DI VNN E +L LR ++ Sbjct: 1 MKNMTVSTRLIAGFGLLTALLLAVAAIGFYGLSQLNGRLDDIARVNNTEAQLANQLRASI 60 Query: 61 SQRAIAIRNIALLEDQESMRVESQTLARQEKIYADALVALDKMFSAEAATTEREKQLLAQ 120 RA+A+RN+ALL D + M E++ +++QE+IYADA L +MF+ TTEREK L+AQ Sbjct: 61 QDRAVAVRNLALLSDAQDMAKEAERISKQEQIYADAYQKLSQMFANGPGTTEREKTLIAQ 120 Query: 121 IKADEAATVPLMAKALQLGLDNKPVDAVKVLITEVRPKQQAWIKSLTELADFEDQLNEEA 180 +K DEA T+P + +A+QLGL N A + L+ VRP QQ W+ ELADFEDQLN +A Sbjct: 121 LKQDEAMTLPALRQAIQLGLSNDMAGATRELLRSVRPLQQTWLARSVELADFEDQLNGQA 180 Query: 181 AADARTTYAWLRTVMLSAVALALLVGVAASALIARSILRQLGAEPSEAQAIAREIASGDL 240 A + Y+ +R ++ + V +LLV + LI RSILRQLG EP AQ++A EIA+G+L Sbjct: 181 QRGAASLYSSVRELIGAIVTASLLVAAVTAILITRSILRQLGGEPVFAQSVAAEIANGNL 240 Query: 241 TATVRLRDGDGSSLMASIEQMRYQLNVIAHGIKSAAETISVASGQIAQGNFDLSQRTEEQ 300 + L+ GD +SLMAS+E MR +L I HGIK++AE+ISVA+ ++AQGN DLSQRTEEQ Sbjct: 241 MVDLHLKPGDSTSLMASLESMRARLTSIVHGIKTSAESISVAANEVAQGNVDLSQRTEEQ 300 Query: 301 AASLEETAASMEELTTTVRQNTSHAAEALRLSGGATETAATGSEAFDRVVSTMDKISASS 360 AASLEETAASMEELT+TV+ NT +A + L+ A+ TA +G + +V+ TMD I++SS Sbjct: 301 AASLEETAASMEELTSTVKHNTDNARQGSTLAVTASRTATSGGDVVQQVMGTMDDITSSS 360 Query: 361 GKMADIIGVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAVASKEIK 420 K+A+II VIEGIAFQTNILALNAAVE+ARAGEQGRGFAVVA EVR+LAQRSAVA+KEIK Sbjct: 361 RKVAEIISVIEGIAFQTNILALNAAVESARAGEQGRGFAVVAGEVRTLAQRSAVAAKEIK 420 Query: 421 DLIGESMAHVGAGSQLVASAGQQMNGIVASVQRFGEIMNEIATATQEQGSGIEQINTAIV 480 +LI S++HV AGSQLVA AG M+ IV SV+R +IM EIA+A+ EQ +GIEQ+N A+ Sbjct: 421 ELIETSVSHVAAGSQLVAGAGTTMDEIVRSVKRVSDIMGEIASASAEQSTGIEQVNVAVA 480 Query: 481 QMDQVTQQNAALVEEASAAAQSLSQQASGLLKVVSIFKIRQDASHHGCGQQQRQCWRIAR 540 QMD+VTQQNAALVE+A+AAAQS++ QA L VSIF++ +RQ + Sbjct: 481 QMDEVTQQNAALVEQATAAAQSMADQAENLRATVSIFRVDARVQTEPAAAVKRQVSVAPK 540 Query: 541 RADAGP 546 +A P Sbjct: 541 QAKRRP 546 >ref|YP_004362535.1| Methyl-accepting chemotaxis sensory transducer [Burkholderia gladioli BSR3] gb|AEA65505.1| Methyl-accepting chemotaxis sensory transducer [Burkholderia gladioli BSR3] Length = 565 Score = 436 bits (1120), Expect = e-120, Method: Composition-based stats. Identities = 299/519 (57%), Positives = 389/519 (74%) Query: 1 MGKLKVVTRLALGFGLILVFLLGISVLGMAGMSRINDALTDITSVNNAETKLVTVLRNAL 60 M KV TRL +GFGL+ LL ++ +G G+S++N L IT VNN ETKL LR ++ Sbjct: 1 MKNTKVSTRLIIGFGLLTALLLAVAAIGFYGLSQLNGKLDSITRVNNTETKLANRLRASI 60 Query: 61 SQRAIAIRNIALLEDQESMRVESQTLARQEKIYADALVALDKMFSAEAATTEREKQLLAQ 120 RAIA+RN+ALL D + M E++ +++QE+IYADA L +MF+ E TTEREK L+AQ Sbjct: 61 QDRAIAVRNLALLTDAQDMAKEAERISKQEQIYADAYQKLSQMFADEPGTTEREKTLVAQ 120 Query: 121 IKADEAATVPLMAKALQLGLDNKPVDAVKVLITEVRPKQQAWIKSLTELADFEDQLNEEA 180 I DEAA +P M KA QLGL N A + L+ VRP QQ W+ ELADFEDQLN++A Sbjct: 121 IMQDEAAVLPPMRKAAQLGLSNDMAGATRELLQNVRPLQQRWLTHSVELADFEDQLNDQA 180 Query: 181 AADARTTYAWLRTVMLSAVALALLVGVAASALIARSILRQLGAEPSEAQAIAREIASGDL 240 DA +TY+ +R ++ + V ++L + A + LI RSILR+LG EP AQ++A EIA+G+L Sbjct: 181 QRDAVSTYSSVRILIAAIVVVSLQLAAATAILITRSILRELGGEPGLAQSVAAEIANGNL 240 Query: 241 TATVRLRDGDGSSLMASIEQMRYQLNVIAHGIKSAAETISVASGQIAQGNFDLSQRTEEQ 300 + ++ D SSLMAS+E MR +L +I GIK++AE+ISVA+ ++AQGN DLSQRTEEQ Sbjct: 241 MVDLHVKPSDSSSLMASLESMRVRLTLIVQGIKTSAESISVAANEVAQGNVDLSQRTEEQ 300 Query: 301 AASLEETAASMEELTTTVRQNTSHAAEALRLSGGATETAATGSEAFDRVVSTMDKISASS 360 AASLEET+ASMEELT+TV+ NT +A + L+ A++TA++G + +VV TM+ I++SS Sbjct: 301 AASLEETSASMEELTSTVKHNTDNARQGSALAVTASQTASSGGDVVRQVVGTMEDITSSS 360 Query: 361 GKMADIIGVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAVASKEIK 420 K+++II VIEGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVR+LAQRSAVA+KEIK Sbjct: 361 RKVSEIITVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRTLAQRSAVAAKEIK 420 Query: 421 DLIGESMAHVGAGSQLVASAGQQMNGIVASVQRFGEIMNEIATATQEQGSGIEQINTAIV 480 +LI S AHV AGSQLVA AG M+ IV SVQR +IM+EIA+A+ EQ +GIEQ+N A+ Sbjct: 421 ELIETSEAHVTAGSQLVAGAGATMDEIVRSVQRVSDIMSEIASASAEQSTGIEQVNVAVA 480 Query: 481 QMDQVTQQNAALVEEASAAAQSLSQQASGLLKVVSIFKI 519 QMD+VTQQNAALVE+A+AAAQS++ QA L VSIF + Sbjct: 481 QMDEVTQQNAALVEQATAAAQSMADQAESLRAAVSIFLV 519 >ref|YP_002908602.1| methyl-accepting chemotaxis sensory transducer [Burkholderia glumae BGR1] gb|ACR31367.1| Methyl-accepting chemotaxis sensory transducer [Burkholderia glumae BGR1] Length = 573 Score = 432 bits (1110), Expect = e-119, Method: Composition-based stats. Identities = 303/546 (55%), Positives = 394/546 (72%) Query: 1 MGKLKVVTRLALGFGLILVFLLGISVLGMAGMSRINDALTDITSVNNAETKLVTVLRNAL 60 M + V TRL GFGL+ LL ++ +G G+S++N L DI VNNAETKL LR ++ Sbjct: 1 MKNVTVSTRLIAGFGLLTALLLAVAAIGFYGLSQLNGRLDDIARVNNAETKLANQLRTSI 60 Query: 61 SQRAIAIRNIALLEDQESMRVESQTLARQEKIYADALVALDKMFSAEAATTEREKQLLAQ 120 RAIA+RN+ALL D + M E++ +++QE+IYADA L ++F+ E TTEREK LLAQ Sbjct: 61 QDRAIAVRNLALLSDAQDMAKEAERISKQEQIYADAYQKLSQLFTDEPGTTEREKALLAQ 120 Query: 121 IKADEAATVPLMAKALQLGLDNKPVDAVKVLITEVRPKQQAWIKSLTELADFEDQLNEEA 180 I+ DEAA +P + KA QL L N A + L+ R Q+ W+ ELADFEDQLN++A Sbjct: 121 IRRDEAAALPPLRKAAQLSLANDREGATRELLQNARTPQRTWLARAVELADFEDQLNDQA 180 Query: 181 AADARTTYAWLRTVMLSAVALALLVGVAASALIARSILRQLGAEPSEAQAIAREIASGDL 240 DA + Y+ +R ++ + VA +LLV A+ LI RSILRQLG EP AQ++A EIA+G+L Sbjct: 181 QRDAVSLYSSVRVLIAAIVAASLLVAAVAAVLITRSILRQLGGEPGLAQSVAAEIANGNL 240 Query: 241 TATVRLRDGDGSSLMASIEQMRYQLNVIAHGIKSAAETISVASGQIAQGNFDLSQRTEEQ 300 + L+ GD +SLMAS+E MR +L I HGIK++AE+ISVA+ Q+AQGN DLSQRTEEQ Sbjct: 241 MVDLHLKPGDSTSLMASLEAMRARLTSIVHGIKTSAESISVAANQVAQGNVDLSQRTEEQ 300 Query: 301 AASLEETAASMEELTTTVRQNTSHAAEALRLSGGATETAATGSEAFDRVVSTMDKISASS 360 AASLEETAASMEELT+TV+ NT +A + L+ A++TA +G + +V+ TMD I++SS Sbjct: 301 AASLEETAASMEELTSTVKHNTDNARQGSTLAVTASQTATSGGDVVRQVMGTMDDITSSS 360 Query: 361 GKMADIIGVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAVASKEIK 420 K+A+II VIEGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVR+LAQRSAVA+KEIK Sbjct: 361 RKVAEIISVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRTLAQRSAVAAKEIK 420 Query: 421 DLIGESMAHVGAGSQLVASAGQQMNGIVASVQRFGEIMNEIATATQEQGSGIEQINTAIV 480 +LI S++HV AGSQLV AG M+ IV SV+R +IM EIA+A+ EQ +GIEQ+N A+ Sbjct: 421 ELIETSVSHVAAGSQLVGDAGTTMDEIVRSVKRVSDIMGEIASASAEQSTGIEQVNVAVA 480 Query: 481 QMDQVTQQNAALVEEASAAAQSLSQQASGLLKVVSIFKIRQDASHHGCGQQQRQCWRIAR 540 QMD+VTQQNAALVE+A+AAAQS++ QA L VSIF++ +RQ + Sbjct: 481 QMDEVTQQNAALVEQATAAAQSMADQAENLRATVSIFRVDARVQTEPAAAVKRQVSVAPK 540 Query: 541 RADAGP 546 +A P Sbjct: 541 QAKRRP 546