BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.0495.p         (127 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003773969.1| hypothetical protein Hsero_0542 [Herbaspiril...   102   3e-20
ref|YP_554868.1| hypothetical protein Bxe_B0429 [Burkholderia xe...    86   2e-15
ref|ZP_02881887.1| conserved hypothetical protein [Burkholderia ...    86   2e-15
ref|YP_003910100.1| hypothetical protein BC1003_4886 [Burkholder...    86   2e-15
ref|ZP_06844544.1| conserved hypothetical protein [Burkholderia ...    85   3e-15

>ref|YP_003773969.1| hypothetical protein Hsero_0542 [Herbaspirillum seropedicae SmR1]
 gb|ADJ62061.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 71

 Score =  102 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 58/75 (77%), Positives = 64/75 (85%), Gaps = 4/75 (5%)

Query: 53  MQLNTAPNLARPDDFYEALIEMHRGLDDATSQDVNARLILLLANHIGGHEVLIEAMQRAR 112
           M LNTAPNL+RPDDFYEALIEMHRGLDD  SQ VNARLILLL NHIGGH+VL++AM+ AR
Sbjct: 1   MNLNTAPNLSRPDDFYEALIEMHRGLDDEASQAVNARLILLLCNHIGGHDVLLDAMRSAR 60

Query: 113 AGVDPAVSAALAEAA 127
           AG    V+A LAEAA
Sbjct: 61  AG----VAAPLAEAA 71


>ref|YP_554868.1| hypothetical protein Bxe_B0429 [Burkholderia xenovorans LB400]
 gb|ABE35518.1| conserved hypothetical protein [Burkholderia xenovorans LB400]
          Length = 79

 Score = 85.9 bits (211), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 47/62 (75%), Positives = 51/62 (82%)

Query: 53  MQLNTAPNLARPDDFYEALIEMHRGLDDATSQDVNARLILLLANHIGGHEVLIEAMQRAR 112
           M LNT PNLARPDDFYEALI+MHR LDDA SQ  NA+LILLLANHIG H  L+EAM+ AR
Sbjct: 1   MTLNTQPNLARPDDFYEALIDMHRDLDDAQSQSANAQLILLLANHIGDHATLMEAMRYAR 60

Query: 113 AG 114
            G
Sbjct: 61  EG 62


>ref|ZP_02881887.1| conserved hypothetical protein [Burkholderia graminis C4D1M]
 gb|EDT12132.1| conserved hypothetical protein [Burkholderia graminis C4D1M]
          Length = 78

 Score = 85.9 bits (211), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 47/63 (74%), Positives = 52/63 (82%)

Query: 53  MQLNTAPNLARPDDFYEALIEMHRGLDDATSQDVNARLILLLANHIGGHEVLIEAMQRAR 112
           M L T PNLARPDDFYEALI+MHRGLDDA SQ  NA+LILLLANHIG H  L+EA++ AR
Sbjct: 1   MALITQPNLARPDDFYEALIDMHRGLDDARSQSANAQLILLLANHIGDHATLLEAIRHAR 60

Query: 113 AGV 115
            GV
Sbjct: 61  EGV 63


>ref|YP_003910100.1| hypothetical protein BC1003_4886 [Burkholderia sp. CCGE1003]
 gb|ADN60809.1| hypothetical protein BC1003_4886 [Burkholderia sp. CCGE1003]
          Length = 78

 Score = 85.5 bits (210), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 47/63 (74%), Positives = 52/63 (82%)

Query: 53  MQLNTAPNLARPDDFYEALIEMHRGLDDATSQDVNARLILLLANHIGGHEVLIEAMQRAR 112
           M LNT PNLARPDDFYEALI+MHR LDDA SQ  NA+LILLLANHIG H  L+EA++ AR
Sbjct: 1   MALNTQPNLARPDDFYEALIDMHRDLDDARSQSANAQLILLLANHIGDHATLLEAIRHAR 60

Query: 113 AGV 115
            GV
Sbjct: 61  EGV 63


>ref|ZP_06844544.1| conserved hypothetical protein [Burkholderia sp. Ch1-1]
 gb|EFG67870.1| conserved hypothetical protein [Burkholderia sp. Ch1-1]
          Length = 79

 Score = 85.1 bits (209), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 47/62 (75%), Positives = 51/62 (82%)

Query: 53  MQLNTAPNLARPDDFYEALIEMHRGLDDATSQDVNARLILLLANHIGGHEVLIEAMQRAR 112
           M LNT PNLARPDDFYEALI+MHR LDDA SQ  NA+LILLLANHIG H  L+EAM+ AR
Sbjct: 1   MTLNTQPNLARPDDFYEALIDMHRDLDDAQSQSANAQLILLLANHIGDHATLLEAMRYAR 60

Query: 113 AG 114
            G
Sbjct: 61  EG 62