BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0492.p (254 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773972.1| IclR family transcription regulator protein ... 290 1e-76 ref|YP_582492.1| putative regulatory protein, IclR family [Cupri... 232 4e-59 ref|YP_775608.1| IclR family transcriptional regulator [Burkhold... 221 1e-55 ref|YP_001810876.1| IclR family transcriptional regulator [Burkh... 218 7e-55 ref|YP_298413.1| IclR family transcriptional regulator [Ralstoni... 215 5e-54 >ref|YP_003773972.1| IclR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ62064.1| IclR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 257 Score = 290 bits (743), Expect = 1e-76, Method: Composition-based stats. Identities = 171/232 (73%), Positives = 196/232 (84%) Query: 1 MSASPVKTQRGIQSVEVAGRLLQALAAARQPLPLVALAAAAELSSAQAHTYLVSLLRLGL 60 M P KTQRGIQSVEVAGRLLQALAAARQP+PLVALAAAA L+SAQAHTYLVSLLRLGL Sbjct: 1 MPQPPAKTQRGIQSVEVAGRLLQALAAARQPMPLVALAAAAGLTSAQAHTYLVSLLRLGL 60 Query: 61 IKRTPGDGHYESGPLALRLGMARLAQEPAYRLALPQVQQLSQETGLSVAITLPTPAGPTI 120 IKRTP +GHYE+GPLALRLG+ARL+Q+PAYRLA+ Q Q LS TG SVA++LPTP GPTI Sbjct: 61 IKRTPAEGHYEAGPLALRLGVARLSQQPAYRLAIAQAQHLSAATGCSVAVSLPTPEGPTI 120 Query: 121 VHYAHAGKPLHVNLHVGTVMALSETATGRTYCAFVAPAHWHALWDVQHPGQPKSRFRQFQ 180 VHYAHAGK LH+NLHVG+VMAL++TATGRT CAF P W W+ QHP ++R RQFQ Sbjct: 121 VHYAHAGKSLHLNLHVGSVMALADTATGRTCCAFQPPQQWLPAWERQHPEASRARIRQFQ 180 Query: 181 EELDGIRKRGMERAVDLPSPGVTSLCMPLLEETQQLLLLVTVIGSSGVIDAG 232 EL+ IR+RG+ERA+D PSPGV+SLCMPLL++ Q L LL+TVIG SG ID G Sbjct: 181 AELEAIRQRGLERAIDAPSPGVSSLCMPLLDQDQVLSLLLTVIGPSGSIDTG 232 >ref|YP_582492.1| putative regulatory protein, IclR family [Cupriavidus metallidurans CH34] gb|ABF07223.1| putative regulatory protein, IclR family [Cupriavidus metallidurans CH34] Length = 261 Score = 232 bits (591), Expect = 4e-59, Method: Composition-based stats. Identities = 148/247 (59%), Positives = 176/247 (71%), Gaps = 4/247 (1%) Query: 7 KTQRGIQSVEVAGRLLQALAAARQPLPLVALAAAAELSSAQAHTYLVSLLRLGLIKRTPG 66 KTQRGIQSVEV GRLLQALA AR+PLPL LAAAA+L+ AQAHTYLVSL+RLGLIKR Sbjct: 11 KTQRGIQSVEVGGRLLQALADARRPLPLAELAAAAQLAPAQAHTYLVSLMRLGLIKREHV 70 Query: 67 DGHYESGPLALRLGMARLAQEPAYRLALPQVQQLSQETGLSVAITLPTPAGPTIVHYAHA 126 DG+YE GPLALRLGM RL EPAYR A+ +V+ L+ + G +VAI+LPTP GPTIVHYA A Sbjct: 71 DGYYEPGPLALRLGMMRLDNEPAYRAAVQRVRTLATDIGFNVAISLPTPQGPTIVHYAPA 130 Query: 127 GKPLHVNLHVGTVMALSETATGRTYCAFVAPAHWHALWDVQHPGQPKSRFRQFQEELDGI 186 G LH+NLHVGTVMAL+ TATGR YCAF +HW +W Q S F E L + Sbjct: 131 GTSLHLNLHVGTVMALATTATGRAYCAFQPESHWLPIWTQQQTPATASTLPAFLETLAAV 190 Query: 187 RKRGMERAVDLPSPGVTSLCMPLLEETQQLLLLVTVIGSSGVIDAG----LARVAGAAVA 242 R RG ER++D PSP V+SL MPLL++ L L++T IGS+G ID +A AA+ Sbjct: 191 RARGTERSIDSPSPAVSSLAMPLLDDDSTLRLVLTAIGSTGAIDVAWDGPVASALRAAIG 250 Query: 243 RVHRGHR 249 + R R Sbjct: 251 DIARAMR 257 >ref|YP_775608.1| IclR family transcriptional regulator [Burkholderia ambifaria AMMD] gb|ABI89274.1| transcriptional regulator, IclR family [Burkholderia ambifaria AMMD] Length = 554 Score = 221 bits (562), Expect = 1e-55, Method: Composition-based stats. Identities = 132/239 (55%), Positives = 163/239 (68%), Gaps = 10/239 (4%) Query: 4 SPVKTQRGIQSVEVAGRLLQALAAARQPLPLVALAAAAELSSAQAHTYLVSLLRLGLIKR 63 +P K QRGIQSVEV GRLL ALA R+PL L LAAAA LS+AQAHTYLVSL RL L+KR Sbjct: 11 APPKAQRGIQSVEVGGRLLDALARRRKPLGLSELAAAAGLSTAQAHTYLVSLTRLALVKR 70 Query: 64 TPGDGHYESGPLALRLGMARLAQEPAYRLALPQVQQLSQETGLSVAITLPTPAGPTIVHY 123 G+YE GPL+LRLG+ + ++PAYR ALP +L++ GLSVA+++P GPTIV Sbjct: 71 DALTGNYEPGPLSLRLGLMSIERQPAYRAALPHAARLAEAVGLSVALSVPGVLGPTIVRI 130 Query: 124 AHAGKPLHVNLHVGTVMALSETATGRTYCAFVAPAHWHALWDVQHPG----------QPK 173 H G PLHVNLHVG+VM+L TATGR + AF PA A+ Q QP Sbjct: 131 EHGGYPLHVNLHVGSVMSLDTTATGRVFRAFGDPALLDAMAASQAGAGDTLAGAEGEQPT 190 Query: 174 SRFRQFQEELDGIRKRGMERAVDLPSPGVTSLCMPLLEETQQLLLLVTVIGSSGVIDAG 232 S +Q ELD IR RG+ER VD PSPGV+++C+P+L+ +L L +TVIGS+G ID G Sbjct: 191 SDAGAWQAELDAIRARGIERGVDRPSPGVSAMCVPVLDADGRLQLALTVIGSTGSIDVG 249 Score = 102 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 87/249 (34%), Positives = 131/249 (52%), Gaps = 8/249 (3%) Query: 3 ASPVKTQRGIQSVEVAGRLLQALAAARQPLPLVALAAAAELSSAQAHTYLVSLLRLGLIK 62 A K QRGI +++ G LL AL +A + LPL LAAAA + +A+A +LVSL ++GL+ Sbjct: 294 ADDTKAQRGINALDSTGDLLLALVSAGRALPLRDLAAAAGMPAAKAFPHLVSLQKIGLLS 353 Query: 63 RTPGDGHYESGPLALRLGMARLAQEPAYRLALPQVQQLSQETGLSVAITLPTPAGPTIVH 122 R G + GPL LG+ + + R A ++ L+ T +SVA P GPT++ Sbjct: 354 RDDA-GCFGGGPLGQALGLIAMQRVSPTRDAEAEIVALAAATDMSVAAATLGPLGPTVIR 412 Query: 123 YAHAGKPLHVNLHVGTVMALSETATGRTYCAFVAP---AHWHALWDVQHPGQPKSRFRQF 179 + +P HV+L VGTVM+L TA GR + A + A A V+ G+ F Sbjct: 413 LEESARPQHVSLQVGTVMSLVNTAIGRIFAAGMPDDVLAGLLADEPVRLAGRAMEVDDAF 472 Query: 180 QEELDGIRKRGMERAVDLPSPGVTSLCMPLLEETQQLLLLVTVIGSSGVI----DAGLAR 235 + L IR ++ A D P PG+ ++ P+ + T + L++ +IGSS D+ LA Sbjct: 473 RARLATIRTDELDFAFDAPVPGIGTIAAPVFDHTGSIRLVIAIIGSSRGFPRGPDSALAH 532 Query: 236 VAGAAVARV 244 AA R+ Sbjct: 533 TLLAATRRL 541 >ref|YP_001810876.1| IclR family transcriptional regulator [Burkholderia ambifaria MC40-6] gb|ACB66660.1| transcriptional regulator, IclR family [Burkholderia ambifaria MC40-6] Length = 576 Score = 218 bits (555), Expect = 7e-55, Method: Composition-based stats. Identities = 130/236 (55%), Positives = 160/236 (67%), Gaps = 10/236 (4%) Query: 7 KTQRGIQSVEVAGRLLQALAAARQPLPLVALAAAAELSSAQAHTYLVSLLRLGLIKRTPG 66 K QRGIQSVEV GRLL ALA R+PL L LAAAA LS+AQAHTYLVSL RL L+KR Sbjct: 40 KAQRGIQSVEVGGRLLDALARRRKPLGLSELAAAAGLSTAQAHTYLVSLTRLALVKRDAL 99 Query: 67 DGHYESGPLALRLGMARLAQEPAYRLALPQVQQLSQETGLSVAITLPTPAGPTIVHYAHA 126 G+YE GPL+LRLG+ + ++PAYR ALP +L++ GLSVA+++P GPTIV H Sbjct: 100 TGNYEPGPLSLRLGLMSIERQPAYRAALPHAARLAEAVGLSVALSVPGVLGPTIVRIEHG 159 Query: 127 GKPLHVNLHVGTVMALSETATGRTYCAFVAPAHWHALWDVQHPG----------QPKSRF 176 G PLHVNLHVG+VM+L TATGR + AF PA + Q QP S Sbjct: 160 GYPLHVNLHVGSVMSLDTTATGRVFRAFGDPALLDTMAASQAGAGDTLAGAEGEQPTSDA 219 Query: 177 RQFQEELDGIRKRGMERAVDLPSPGVTSLCMPLLEETQQLLLLVTVIGSSGVIDAG 232 +Q ELD IR RG+ER VD PSPGV+++C+P+L+ +L L +TVIGS+G ID G Sbjct: 220 GAWQAELDAIRARGIERGVDRPSPGVSAMCVPVLDADGRLQLALTVIGSTGSIDVG 275 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 87/249 (34%), Positives = 131/249 (52%), Gaps = 8/249 (3%) Query: 3 ASPVKTQRGIQSVEVAGRLLQALAAARQPLPLVALAAAAELSSAQAHTYLVSLLRLGLIK 62 A K QRGI +++ G LL AL +A + LPL LAAAA + +A+A +LVSL ++GL+ Sbjct: 320 ADDTKAQRGINALDSTGDLLLALVSAGRALPLRDLAAAAGMPAAKAFPHLVSLQKIGLLS 379 Query: 63 RTPGDGHYESGPLALRLGMARLAQEPAYRLALPQVQQLSQETGLSVAITLPTPAGPTIVH 122 R G + GPL LG+ + + R A ++ L+ T +SVA P GPT++ Sbjct: 380 RDDA-GCFGGGPLGQALGLIAMQRVSPTRDAEAEIVALAAATDMSVAAATLGPLGPTVIR 438 Query: 123 YAHAGKPLHVNLHVGTVMALSETATGRTYCAFVAP---AHWHALWDVQHPGQPKSRFRQF 179 + +P HV+L VGTVM+L TA GR + A ++ A A V+ G F Sbjct: 439 LEESARPQHVSLQVGTVMSLVNTAIGRIFAAGMSDDVLAGLLADEPVRLAGSATQVDDAF 498 Query: 180 QEELDGIRKRGMERAVDLPSPGVTSLCMPLLEETQQLLLLVTVIGSSGVI----DAGLAR 235 + L IR ++ A D P PG+ ++ P+ + T + L++ +IGSS D+ LA Sbjct: 499 RARLATIRTDELDFAFDAPVPGIGTIAAPVFDHTGSIRLVIAIIGSSRGFPRGPDSALAH 558 Query: 236 VAGAAVARV 244 AA R+ Sbjct: 559 TLLAATRRL 567 >ref|YP_298413.1| IclR family transcriptional regulator [Ralstonia eutropha JMP134] gb|AAZ63569.1| transcriptional regulator, IclR family [Ralstonia eutropha JMP134] Length = 264 Score = 215 bits (547), Expect = 5e-54, Method: Composition-based stats. Identities = 127/224 (56%), Positives = 155/224 (69%) Query: 7 KTQRGIQSVEVAGRLLQALAAARQPLPLVALAAAAELSSAQAHTYLVSLLRLGLIKRTPG 66 K QRGIQSVEVAGR L ALAA R P+ L +LA AA+L+ AQAH YLVSL RLGLIKR Sbjct: 16 KVQRGIQSVEVAGRFLGALAAGRAPMTLASLADAAQLAPAQAHAYLVSLTRLGLIKRDHL 75 Query: 67 DGHYESGPLALRLGMARLAQEPAYRLALPQVQQLSQETGLSVAITLPTPAGPTIVHYAHA 126 G YE GPL+L+LGM L + AYR A+P+V +L++ TG SVAI++ P GP IV Y A Sbjct: 76 SGRYEPGPLSLQLGMLHLDSDAAYRAAVPRVDELAEATGFSVAISIAGPHGPAIVRYVPA 135 Query: 127 GKPLHVNLHVGTVMALSETATGRTYCAFVAPAHWHALWDVQHPGQPKSRFRQFQEELDGI 186 PLHVNLHVGTVMAL+ TATGR YCAF W A+W Q P + F + L I Sbjct: 136 AAPLHVNLHVGTVMALAATATGRVYCAFEPRTRWDAIWRQQQPHATAADAAAFDDRLQAI 195 Query: 187 RKRGMERAVDLPSPGVTSLCMPLLEETQQLLLLVTVIGSSGVID 230 RGMER++D PSP V+SL +P+L+ L L++TV+GS+G ID Sbjct: 196 HARGMERSIDTPSPAVSSLSVPVLDTDGALRLVLTVVGSTGAID 239