BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0491.p (304 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773973.1| transcription regulator protein [Herbaspiril... 306 2e-81 ref|YP_002008000.1| transcriptional regulator IclR family [Cupri... 296 2e-78 ref|YP_298412.1| IclR family transcriptional regulator [Ralstoni... 295 9e-78 ref|YP_582491.1| putative regulatory protein, IclR family [Cupri... 285 6e-75 ref|YP_841060.1| IclR family transcriptional regulator [Ralstoni... 282 4e-74 >ref|YP_003773973.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ62065.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 282 Score = 306 bits (785), Expect = 2e-81, Method: Composition-based stats. Identities = 214/272 (78%), Positives = 227/272 (83%) Query: 5 KDLPLPEAADPEGARSQRGIQSLDSTGALLDALLAAARPLPLGDLARLAGMPAAKAFPHL 64 K LP +A AR QRGIQSLD+TG LLDALLAA RPL LGDLARLAGMPAAKAFPHL Sbjct: 2 KHLPPDDAPADSDARGQRGIQSLDNTGQLLDALLAAGRPLALGDLARLAGMPAAKAFPHL 61 Query: 65 VSLQKIGMLARDAQGNFFPGALALDLGLAALQRLSPLREAEAEVVTLVQATGLSVALAVV 124 VSLQKIG+L RDAQGNF PGAL L+LGLAALQRLSPLREAEAEV L Q TGLSVALAV Sbjct: 62 VSLQKIGLLMRDAQGNFLPGALGLELGLAALQRLSPLREAEAEVAALAQETGLSVALAVA 121 Query: 125 GPLGPTVVRLEESSRPQHVSLRIGTVLSMVHTAIGRVCAAHLPPDMLAGALAMDAIRMEG 184 GPLGPTVVRLEESSRPQHVSLRIGTVLSMVHTAIGRVCAA P D L GALA+D IRMEG Sbjct: 122 GPLGPTVVRLEESSRPQHVSLRIGTVLSMVHTAIGRVCAACAPADGLPGALALDGIRMEG 181 Query: 185 AQPDSVSHPDGSLRHDYAERLRQIRTLSLDQALGRPVPGIHTLAAPVFNHAGQLALVMAV 244 A +SV H DGSL YA +L +IR +DQALG PVPGI+TLAAPVFNHAGQLALVMAV Sbjct: 182 AALESVCHADGSLHAAYAAQLAKIRAQGMDQALGHPVPGINTLAAPVFNHAGQLALVMAV 241 Query: 245 MGSSGSFDTAADGVVARLLRAAAHNVSWRLGA 276 MGSSGS+DTA G VA+ LR+AA VSWRLGA Sbjct: 242 MGSSGSYDTALQGAVAQRLRSAAQAVSWRLGA 273 >ref|YP_002008000.1| transcriptional regulator IclR family [Cupriavidus taiwanensis LMG 19424] emb|CAQ71944.1| putative TRANSCRIPTION REGULATOR PROTEIN, iclR domain [Cupriavidus taiwanensis LMG 19424] Length = 276 Score = 296 bits (759), Expect = 2e-78, Method: Composition-based stats. Identities = 182/261 (69%), Positives = 204/261 (78%) Query: 16 EGARSQRGIQSLDSTGALLDALLAAARPLPLGDLARLAGMPAAKAFPHLVSLQKIGMLAR 75 EG + QRGIQSLDSTG LL AL+AA RPLPL DLA AGMPAAKAFPHLVSLQK G+LAR Sbjct: 12 EGGKPQRGIQSLDSTGQLLGALVAAGRPLPLRDLALAAGMPAAKAFPHLVSLQKTGLLAR 71 Query: 76 DAQGNFFPGALALDLGLAALQRLSPLREAEAEVVTLVQATGLSVALAVVGPLGPTVVRLE 135 DA GN+ G LAL+LGL ALQRLSP REAE EV+ L TGLSVA+AV+GPLGPTVVRLE Sbjct: 72 DAAGNYLCGPLALELGLIALQRLSPTREAEPEVIELAGTTGLSVAMAVLGPLGPTVVRLE 131 Query: 136 ESSRPQHVSLRIGTVLSMVHTAIGRVCAAHLPPDMLAGALAMDAIRMEGAQPDSVSHPDG 195 ES+RPQHVSLR+GTVLS+VHTAIGR AAHLP ++LAG L DA+RM GA D V P G Sbjct: 132 ESARPQHVSLRVGTVLSLVHTAIGRTVAAHLPANVLAGLLQNDALRMAGAAADQVLGPGG 191 Query: 196 SLRHDYAERLRQIRTLSLDQALGRPVPGIHTLAAPVFNHAGQLALVMAVMGSSGSFDTAA 255 L YA RL Q+R +D AL PVPGI TLAAPVF+H G LALV+AVMGSSGSFD+ Sbjct: 192 KLAPAYAGRLAQVRAARIDNALSHPVPGIDTLAAPVFDHTGSLALVIAVMGSSGSFDSGT 251 Query: 256 DGVVARLLRAAAHNVSWRLGA 276 +G A L+R AA +SWR GA Sbjct: 252 EGATAALVRQAAARLSWRFGA 272 >ref|YP_298412.1| IclR family transcriptional regulator [Ralstonia eutropha JMP134] gb|AAZ63568.1| transcriptional regulator, IclR family [Ralstonia eutropha JMP134] Length = 279 Score = 295 bits (754), Expect = 9e-78, Method: Composition-based stats. Identities = 174/261 (66%), Positives = 205/261 (78%) Query: 16 EGARSQRGIQSLDSTGALLDALLAAARPLPLGDLARLAGMPAAKAFPHLVSLQKIGMLAR 75 +G + QRGIQSLDSTG LL AL+AA RPLPL DLA+ AGM AKAFPHLVSLQK G+LAR Sbjct: 14 DGGKPQRGIQSLDSTGQLLAALVAAGRPLPLRDLAQAAGMAPAKAFPHLVSLQKTGLLAR 73 Query: 76 DAQGNFFPGALALDLGLAALQRLSPLREAEAEVVTLVQATGLSVALAVVGPLGPTVVRLE 135 DA GNF G L+L+LGL ALQRLSP REAE E++ L +ATGLSVA+AV+GPLGPTVVRLE Sbjct: 74 DAAGNFLCGPLSLELGLIALQRLSPTREAEPEIIELAEATGLSVAMAVLGPLGPTVVRLE 133 Query: 136 ESSRPQHVSLRIGTVLSMVHTAIGRVCAAHLPPDMLAGALAMDAIRMEGAQPDSVSHPDG 195 ES+RPQHVSLR+GTVLS+V+TAIGR AA+LP ++LAG L D +RM G + V G Sbjct: 134 ESARPQHVSLRVGTVLSLVNTAIGRTMAAYLPENVLAGLLERDDLRMAGVRRADVLLDGG 193 Query: 196 SLRHDYAERLRQIRTLSLDQALGRPVPGIHTLAAPVFNHAGQLALVMAVMGSSGSFDTAA 255 L DYA+RL +R +D AL RPVPGI TLAAPVF+H G LALV+AVMGS+GSFD++ Sbjct: 194 GLVPDYADRLAHVRAGQVDNALSRPVPGIDTLAAPVFDHTGSLALVVAVMGSTGSFDSST 253 Query: 256 DGVVARLLRAAAHNVSWRLGA 276 G A L+R AAH +SWR GA Sbjct: 254 QGATADLVRHAAHRLSWRFGA 274 >ref|YP_582491.1| putative regulatory protein, IclR family [Cupriavidus metallidurans CH34] gb|ABF07222.1| putative regulatory protein, IclR family [Cupriavidus metallidurans CH34] Length = 268 Score = 285 bits (729), Expect = 6e-75, Method: Composition-based stats. Identities = 174/261 (66%), Positives = 203/261 (77%), Gaps = 6/261 (2%) Query: 16 EGARSQRGIQSLDSTGALLDALLAAARPLPLGDLARLAGMPAAKAFPHLVSLQKIGMLAR 75 + A+ QRGIQSLD+TG LL AL+ A +PL LG+LAR AGM AKAFPHLVSLQKIG+++R Sbjct: 8 DAAKPQRGIQSLDNTGQLLGALVDAGQPLSLGELARAAGMVPAKAFPHLVSLQKIGLISR 67 Query: 76 DAQGNFFPGALALDLGLAALQRLSPLREAEAEVVTLVQATGLSVALAVVGPLGPTVVRLE 135 +A G+F G L L+LGL ALQRLSP REAE EV+ L ATGLSVA+AV GPLGPTV+RLE Sbjct: 68 NADGDFQAGTLGLELGLIALQRLSPTREAEPEVIALAHATGLSVAMAVQGPLGPTVIRLE 127 Query: 136 ESSRPQHVSLRIGTVLSMVHTAIGRVCAAHLPPDMLAGALAMDAIRMEGAQPDSVSHPDG 195 ES+RPQHVSLR+GTVLSMV+TAIGRV AAHLP D+LA ALA DAIRM G + DG Sbjct: 128 ESARPQHVSLRVGTVLSMVNTAIGRVVAAHLPDDLLADALAQDAIRMAG------TAFDG 181 Query: 196 SLRHDYAERLRQIRTLSLDQALGRPVPGIHTLAAPVFNHAGQLALVMAVMGSSGSFDTAA 255 +L Y ERLR IR +D A+ RPVPGI TLAAPVF+H G LALV+AVMGSSGSFD+ Sbjct: 182 ALPSGYLERLRGIRAGGIDHAVSRPVPGIDTLAAPVFDHTGALALVVAVMGSSGSFDSRL 241 Query: 256 DGVVARLLRAAAHNVSWRLGA 276 D A ++R AA +SWR GA Sbjct: 242 DSDTAHVVRQAARRLSWRFGA 262 >ref|YP_841060.1| IclR family transcriptional regulator [Ralstonia eutropha H16] emb|CAJ96330.1| transcriptional regulator, IclR-family [Ralstonia eutropha H16] Length = 285 Score = 282 bits (722), Expect = 4e-74, Method: Composition-based stats. Identities = 182/271 (67%), Positives = 204/271 (75%) Query: 14 DPEGARSQRGIQSLDSTGALLDALLAAARPLPLGDLARLAGMPAAKAFPHLVSLQKIGML 73 D EG + QRGIQSLDSTG LL AL+AA RPL L DLA AGMP AKAFPHLVSLQK G+L Sbjct: 10 DLEGGKPQRGIQSLDSTGQLLVALVAAGRPLALRDLALAAGMPPAKAFPHLVSLQKTGLL 69 Query: 74 ARDAQGNFFPGALALDLGLAALQRLSPLREAEAEVVTLVQATGLSVALAVVGPLGPTVVR 133 ARDA GN+ G L L+LGL ALQRLSP REAE EV+ L ATGLSVA+AV+GPLGPTVVR Sbjct: 70 ARDAAGNYLCGPLGLELGLIALQRLSPTREAEPEVIELAGATGLSVAMAVLGPLGPTVVR 129 Query: 134 LEESSRPQHVSLRIGTVLSMVHTAIGRVCAAHLPPDMLAGALAMDAIRMEGAQPDSVSHP 193 LEES+RPQHVSLR+GTVLS+VHTAIGR AA+LP ++LAG L D +RM GA V P Sbjct: 130 LEESARPQHVSLRVGTVLSLVHTAIGRTAAAYLPANVLAGLLEKDDLRMAGAAAAEVLEP 189 Query: 194 DGSLRHDYAERLRQIRTLSLDQALGRPVPGIHTLAAPVFNHAGQLALVMAVMGSSGSFDT 253 G L YA RL Q+R LD AL PVPGI TLAAPVF+H G LALV+AVMGSSGSFD+ Sbjct: 190 GGKLAPAYAGRLAQVRAARLDNALSHPVPGIDTLAAPVFDHTGSLALVIAVMGSSGSFDS 249 Query: 254 AADGVVARLLRAAAHNVSWRLGAFAQASPQA 284 + G A L+R AA +SWR GA A QA Sbjct: 250 STAGATAALVRQAARRLSWRFGAPDTAWAQA 280