BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.0484.p         (196 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003773979.1| hypothetical protein Hsero_0552 [Herbaspiril...   186   2e-45

>ref|YP_003773979.1| hypothetical protein Hsero_0552 [Herbaspirillum seropedicae SmR1]
 gb|ADJ62071.1| hypothetical protein Hsero_0552 [Herbaspirillum seropedicae SmR1]
          Length = 185

 Score =  186 bits (471), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 101/173 (58%), Positives = 123/173 (71%), Gaps = 9/173 (5%)

Query: 22  LTYVELWRGAEVLIRKAGEEQSGSRWVYLSVLMMLSFCLEAYLNHAGPLLFGAGWNEGRQ 81
           LTY ELW GA+VLIRKAGE+++ SRWV+LS L+MLS CLEAYLNHAGPLLFG+ W+EG Q
Sbjct: 17  LTYAELWHGADVLIRKAGEDEASSRWVFLSALLMLSLCLEAYLNHAGPLLFGSTWSEGPQ 76

Query: 82  AHGTQDARSKLLLICAACGVELEPPRKYRTVALTLLELRHSLGQATQVRLPPPGISTARR 141
           A   ++ R++L LIC ACGVE    RKY TVA TL++LR SL  A Q RL     + A  
Sbjct: 77  ALVHKNVRARLALICTACGVEWSARRKYWTVASTLIDLRTSLVLARQTRLN----AAADT 132

Query: 142 SLSAMAGDPDELALDPAWSPYCERSVVLDYRAQLRSLLAKLHARLPPEERSPL 194
                +G      +DP+WSPYC R+VVLDYRA+LRSLLA +H RLP + R  L
Sbjct: 133 RTQEQSG-----VVDPSWSPYCNRAVVLDYRAELRSLLASIHGRLPAQGRGNL 180