BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0477.p (522 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775129.1| methyl-accepting chemotaxis transducer trans... 587 e-165 ref|YP_003776875.1| methyl-accepting chemotaxis transducer trans... 490 e-136 ref|YP_003777106.1| methyl-accepting chemotaxis transducer trans... 481 e-133 ref|YP_003777983.1| methyl-accepting chemotaxis I protein [Herba... 436 e-120 ref|YP_001353025.1| methyl-accepting chemotaxis I (serine chemor... 407 e-111 >ref|YP_003775129.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ63221.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 522 Score = 587 bits (1512), Expect = e-165, Method: Composition-based stats. Identities = 402/518 (77%), Positives = 452/518 (87%) Query: 1 MKVLSNMKIGAKLSLGFASLLVMMLVLVGVAMVGINGLRSSVERANEVQNESLAPLYVAR 60 MKVLS MKIG KLSLGFAS L+++L LV AM+GIN LR ++ AN+++NE L PLY+AR Sbjct: 1 MKVLSEMKIGVKLSLGFASQLLLLLALVAAAMLGINSLRETIVYANKLKNEQLEPLYLAR 60 Query: 61 EALDQTGIAARNAYVFLSDADAQTELKIVDEQKALYLAELQKLETRLAGNPHFAAVRTGL 120 EALDQTGIAARNAYVF+SDADA+ EL IVDEQKA+YL +LQ LE RLA FAAVR GL Sbjct: 61 EALDQTGIAARNAYVFVSDADAKNELNIVDEQKAIYLQQLQLLEPRLADRAGFAAVREGL 120 Query: 121 LQMADELKRPRQYRESGAMEAYRSFLVNDCSPLRRKIVADINQLIADIAGQSTAAGEQSE 180 LQMA+ELKRPR+YR+SGAMEAYR FLVN+CSPLRRKIVA+INQLI I+ +ST AG+ +E Sbjct: 121 LQMAEELKRPRRYRDSGAMEAYRDFLVNECSPLRRKIVANINQLIDQISAESTTAGDTAE 180 Query: 181 RSATHALKLIATLAVVAILIAVAVAVVITRGLLRQLGGEPAYAMEIAQRIAHGDLAVEVA 240 +A AL I+ LA +A+LIAV +A ITR LLRQLGGEPAYAM IAQRIAHGDLAV+V Sbjct: 181 NAAKQALLFISLLAGLALLIAVVIAFFITRSLLRQLGGEPAYAMGIAQRIAHGDLAVDVV 240 Query: 241 TRSNDKSSLLHALRMMRDSLAAIVGEVRQGTDAIERASTEIASGNVDLSGRTERQASSLE 300 TRS+D+SSLL+A++MMRDSL+ IV +VRQGTD+IERA +EI+SGN DLSGRTERQASSLE Sbjct: 241 TRSHDQSSLLYAIKMMRDSLSRIVAQVRQGTDSIERACSEISSGNADLSGRTERQASSLE 300 Query: 301 ETASAMEQITSAVRQSAANAEQANTLAASASEIAVTGGNMMGEVVATMEDIRQSSVKIVD 360 ETASAMEQITSAVRQSA NA QAN LA SAS IA+ GG MMG+VVATMEDI SSVKIVD Sbjct: 301 ETASAMEQITSAVRQSADNAIQANQLAGSASSIALKGGQMMGDVVATMEDIHHSSVKIVD 360 Query: 361 IISVIDGIAFQTNILALNAAVEAARAGEGGRGFAVVASEVRTLAQRSAAAAKEIKELIGA 420 IISVIDGIAFQTNILALNAAVEAARAGEGGRGFAVVASEVRTLAQRSAAAAKEIKELI A Sbjct: 361 IISVIDGIAFQTNILALNAAVEAARAGEGGRGFAVVASEVRTLAQRSAAAAKEIKELISA 420 Query: 421 SVAKVESGSGRVKGAGQTMDEIVASVRKVTDVIAEISLSSREQSEGIEQVNDAIGHMDEA 480 SVAKVESGSG VKGAG+TM E+V SV+ V+ VIAEI+ SSREQS GIEQVNDAI HMDE Sbjct: 421 SVAKVESGSGLVKGAGETMGELVGSVQNVSKVIAEITASSREQSTGIEQVNDAISHMDEV 480 Query: 481 TQQNSALVEQAAAAAEALTSQAGALARLVSTFKLAPAA 518 TQQNSALVEQ+AAAAEALT+QA +LARLVSTFK+AP A Sbjct: 481 TQQNSALVEQSAAAAEALTAQAQSLARLVSTFKVAPDA 518 >ref|YP_003776875.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ64967.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 542 Score = 490 bits (1262), Expect = e-136, Method: Composition-based stats. Identities = 321/512 (62%), Positives = 407/512 (79%) Query: 3 VLSNMKIGAKLSLGFASLLVMMLVLVGVAMVGINGLRSSVERANEVQNESLAPLYVAREA 62 + +MKIG KL+LGF +L+V+ +++ G+++ I L SS++ VQ++ LAPLY AREA Sbjct: 1 MFKHMKIGTKLALGFGALVVLTILVSGISLSSIRALTSSIKAVLAVQDQKLAPLYAAREA 60 Query: 63 LDQTGIAARNAYVFLSDADAQTELKIVDEQKALYLAELQKLETRLAGNPHFAAVRTGLLQ 122 LDQTGIAARNAYVF SDADAQ EL IVDEQK LYL ++ L AGN F VR+G+LQ Sbjct: 61 LDQTGIAARNAYVFRSDADAQKELAIVDEQKQLYLKAIKDLGPLFAGNKEFEKVRSGMLQ 120 Query: 123 MADELKRPRQYRESGAMEAYRSFLVNDCSPLRRKIVADINQLIADIAGQSTAAGEQSERS 182 MA+ELKRPR YRESG E YR FLVN+CSPLRR+IV+DI ++A + ++ A + +++ Sbjct: 121 MAEELKRPRLYRESGRSEEYRDFLVNECSPLRRQIVSDIGTVLAQVEAENNRAQDATDKM 180 Query: 183 ATHALKLIATLAVVAILIAVAVAVVITRGLLRQLGGEPAYAMEIAQRIAHGDLAVEVATR 242 A A +A L +V ++I++ +AV++TRGLL+QLGGEP YA +IAQ+IA GDL V T+ Sbjct: 181 AQLAALTVAVLTLVVVVISILIAVLLTRGLLKQLGGEPTYAAQIAQQIADGDLTANVQTK 240 Query: 243 SNDKSSLLHALRMMRDSLAAIVGEVRQGTDAIERASTEIASGNVDLSGRTERQASSLEET 302 + D SSLL A++ MRDSL +IV +VRQGT IE+AS+EIASGN+DLS RTE+QASSLEET Sbjct: 241 TGDNSSLLFAIKNMRDSLVSIVAQVRQGTFTIEQASSEIASGNLDLSSRTEQQASSLEET 300 Query: 303 ASAMEQITSAVRQSAANAEQANTLAASASEIAVTGGNMMGEVVATMEDIRQSSVKIVDII 362 ASAME++ + V+Q+A NA+QA+ LA SASE+A GG ++ +VV TM+ I SS KIVDII Sbjct: 301 ASAMEELMTTVKQNADNAKQASQLAVSASEVASQGGEVVAQVVTTMDGINASSRKIVDII 360 Query: 363 SVIDGIAFQTNILALNAAVEAARAGEGGRGFAVVASEVRTLAQRSAAAAKEIKELIGASV 422 SVIDGIAFQTNILALNAAVEAARAGE GRGFAVVASEVR+LAQRSA AAKEI ELI SV Sbjct: 361 SVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEITELINDSV 420 Query: 423 AKVESGSGRVKGAGQTMDEIVASVRKVTDVIAEISLSSREQSEGIEQVNDAIGHMDEATQ 482 +++E GS V+ AGQTM+ +V SV++VTDV+AEIS++S+EQS GI QVN AI HMDEATQ Sbjct: 421 SQIERGSSLVEQAGQTMENVVNSVKRVTDVVAEISMASQEQSHGITQVNTAITHMDEATQ 480 Query: 483 QNSALVEQAAAAAEALTSQAGALARLVSTFKL 514 QNSALVE+AAAAA ++ QAGAL+ LV+TF+L Sbjct: 481 QNSALVEEAAAAANSMKEQAGALSGLVATFRL 512 >ref|YP_003777106.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ65198.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 553 Score = 481 bits (1238), Expect = e-133, Method: Composition-based stats. Identities = 326/515 (63%), Positives = 400/515 (77%) Query: 1 MKVLSNMKIGAKLSLGFASLLVMMLVLVGVAMVGINGLRSSVERANEVQNESLAPLYVAR 60 M NMKIG KLSLGFA LL + ++L G+++ IN L S++ A++VQ E L PLY+AR Sbjct: 9 MSGFKNMKIGTKLSLGFALLLTLTIILAGISLFSINRLTGSIKAADDVQVERLLPLYLAR 68 Query: 61 EALDQTGIAARNAYVFLSDADAQTELKIVDEQKALYLAELQKLETRLAGNPHFAAVRTGL 120 EALDQTG+AARNAYVF ++ADAQ EL IVDEQK +YL L+ +E G+ F VRTGL Sbjct: 69 EALDQTGLAARNAYVFRTEADAQKELAIVDEQKQIYLKALKDMEPHFVGHKGFDKVRTGL 128 Query: 121 LQMADELKRPRQYRESGAMEAYRSFLVNDCSPLRRKIVADINQLIADIAGQSTAAGEQSE 180 LQMA+ELKRPR YRESG ME +R FLVN+CSPLRR+IV DIN++I + + A + + Sbjct: 129 LQMAEELKRPRIYRESGKMEEFRDFLVNECSPLRRQIVLDINKVIEEADADNIKAHQTTV 188 Query: 181 RSATHALKLIATLAVVAILIAVAVAVVITRGLLRQLGGEPAYAMEIAQRIAHGDLAVEVA 240 A A L+A L + +I+ VA VITR LL+QLGGEPAYA +IAQ+IA GDL +V Sbjct: 189 DMAAMASSLVAVLTGIVAVISALVAFVITRSLLKQLGGEPAYAADIAQQIASGDLTADVD 248 Query: 241 TRSNDKSSLLHALRMMRDSLAAIVGEVRQGTDAIERASTEIASGNVDLSGRTERQASSLE 300 + D +SLL A++ MRD+LAAIVG+VR+GT AIE+AS EIA+GN+DLS RTE+QA +LE Sbjct: 249 AKPGDTTSLLFAIKKMRDNLAAIVGKVREGTHAIEQASAEIATGNMDLSSRTEQQAGALE 308 Query: 301 ETASAMEQITSAVRQSAANAEQANTLAASASEIAVTGGNMMGEVVATMEDIRQSSVKIVD 360 ETASAME++ S V+Q+A NA QA+ LA SAS++A GG ++G+VV+TME I SS KIVD Sbjct: 309 ETASAMEELMSTVKQNADNARQASQLAVSASDVASQGGQVVGQVVSTMEGINASSRKIVD 368 Query: 361 IISVIDGIAFQTNILALNAAVEAARAGEGGRGFAVVASEVRTLAQRSAAAAKEIKELIGA 420 IISVIDGIAFQTNILALNAAVEAARAGE GRGFAVVASEVR+LAQRSA AAKEI +LI Sbjct: 369 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEITDLIND 428 Query: 421 SVAKVESGSGRVKGAGQTMDEIVASVRKVTDVIAEISLSSREQSEGIEQVNDAIGHMDEA 480 SV ++E GS V AG TM+ +V SV++VTDV+AEIS +S+EQS GI QVN AI HMDEA Sbjct: 429 SVGQIEQGSSLVGQAGATMENVVTSVKRVTDVVAEISHASQEQSHGIAQVNLAITHMDEA 488 Query: 481 TQQNSALVEQAAAAAEALTSQAGALARLVSTFKLA 515 TQQNSALVE+AAAAA ++ +QA LA LVSTFKLA Sbjct: 489 TQQNSALVEEAAAAANSMKTQAEQLAGLVSTFKLA 523 >ref|YP_003777983.1| methyl-accepting chemotaxis I protein [Herbaspirillum seropedicae SmR1] gb|ADJ66075.1| methyl-accepting chemotaxis I protein [Herbaspirillum seropedicae SmR1] Length = 544 Score = 436 bits (1121), Expect = e-120, Method: Composition-based stats. Identities = 287/517 (55%), Positives = 387/517 (74%) Query: 1 MKVLSNMKIGAKLSLGFASLLVMMLVLVGVAMVGINGLRSSVERANEVQNESLAPLYVAR 60 M LS +KIG +L LGF ++V+ML+L+ A++ +N + ++V+ V + L PLYVAR Sbjct: 1 MNQLSKLKIGTQLRLGFGIVIVLMLILITFALMRMNAISAAVQYQETVTDTKLEPLYVAR 60 Query: 61 EALDQTGIAARNAYVFLSDADAQTELKIVDEQKALYLAELQKLETRLAGNPHFAAVRTGL 120 EALDQTG+AARNAY+F A+A EL ++D+QKALYL L++LE LAG F + GL Sbjct: 61 EALDQTGLAARNAYIFHDQAEALKELALLDQQKALYLDALRQLEPVLAGQAQFEKAKAGL 120 Query: 121 LQMADELKRPRQYRESGAMEAYRSFLVNDCSPLRRKIVADINQLIADIAGQSTAAGEQSE 180 L MA+ELKRPR+YRESG MEAY FLV +CSPLRR+IV DI+ L+ + ++ AAG++++ Sbjct: 121 LAMAEELKRPRKYRESGQMEAYGEFLVKECSPLRRQIVQDIDALLKVVQRETKAAGDRAD 180 Query: 181 RSATHALKLIATLAVVAILIAVAVAVVITRGLLRQLGGEPAYAMEIAQRIAHGDLAVEVA 240 +L+LI A + + +++A A +I + LL QLGGEP YA+EI RIAHG+L+ V Sbjct: 181 ALFASSLRLIMACAAIILGVSIATAWLIRKSLLGQLGGEPRYAVEITGRIAHGELSAPVD 240 Query: 241 TRSNDKSSLLHALRMMRDSLAAIVGEVRQGTDAIERASTEIASGNVDLSGRTERQASSLE 300 T D+SSLL+ +R+MRD LA++V +VR GT AI AS+EIA GN +LS RTE+QA +LE Sbjct: 241 TAPGDRSSLLYEIRVMRDKLASLVQQVRVGTHAIADASSEIAVGNQNLSERTEQQADTLE 300 Query: 301 ETASAMEQITSAVRQSAANAEQANTLAASASEIAVTGGNMMGEVVATMEDIRQSSVKIVD 360 +T +AM+++T AVR++A NA+QA LA SAS++A G ++ +VV TM I SS KIVD Sbjct: 301 KTVAAMDELTQAVRRNADNAQQAKHLAGSASDVASQAGTVVQQVVDTMGQIDASSRKIVD 360 Query: 361 IISVIDGIAFQTNILALNAAVEAARAGEGGRGFAVVASEVRTLAQRSAAAAKEIKELIGA 420 II VIDGIAFQTNILALNAAVEAARAGE GRGFAVVA+EVR+LAQRSA+AA+EIK LI + Sbjct: 361 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAAEVRSLAQRSASAAREIKSLIDS 420 Query: 421 SVAKVESGSGRVKGAGQTMDEIVASVRKVTDVIAEISLSSREQSEGIEQVNDAIGHMDEA 480 SV+ V GS V+ AG TM ++V SV++V+ V+ EIS +S+ QS+GI +VN AI +DE Sbjct: 421 SVSSVTDGSRLVEQAGATMQDVVESVQRVSAVVVEISAASQAQSDGILEVNTAIARLDEN 480 Query: 481 TQQNSALVEQAAAAAEALTSQAGALARLVSTFKLAPA 517 TQQN+ALVE+AAAA+++++ QA L +LV FKL+PA Sbjct: 481 TQQNAALVEEAAAASQSMSQQADHLNQLVGAFKLSPA 517 >ref|YP_001353025.1| methyl-accepting chemotaxis I (serine chemoreceptor protein) transmembrane protein [Janthinobacterium sp. Marseille] gb|ABR90626.1| methyl-accepting chemotaxis I (serine chemoreceptor protein) transmembrane protein [Janthinobacterium sp. Marseille] Length = 560 Score = 407 bits (1045), Expect = e-111, Method: Composition-based stats. Identities = 281/517 (54%), Positives = 369/517 (71%), Gaps = 5/517 (0%) Query: 3 VLSNMKIGAKLSLGFASLLVMMLVLVGVAMVGINGLRSSVERANEVQNESLAPLYVAREA 62 + +NMK+G+KLSLGF ++ L++ A++ IN + + NE++ + L LY AREA Sbjct: 1 MFANMKVGSKLSLGFGVTALLTLLIAVFALMRINQIDGVIATQNEIRTQQLERLYTAREA 60 Query: 63 LDQTGIAARNAYVFLSDADAQTELKIVDEQKALYLAELQKLETRLAGNPHFAAVRTGLLQ 122 L QTG+AARNAY+F + ADA EL I+DEQKA+YL L K+ G+ +F V GLL Sbjct: 61 LGQTGLAARNAYIFTNKADALKELDILDEQKAIYLDALAKMTPFFKGDANFEKVSKGLLT 120 Query: 123 MADELKRPRQYRESGAMEAYRSFLVNDCSPLRRKIVADINQLIADIAGQSTAAGEQSERS 182 MA+ELKRPRQ+R++ MEA+ FLVN+CSPLRR+IVADI ++ + +++ + Sbjct: 121 MAEELKRPRQFRDADQMEAFGKFLVNECSPLRRQIVADIGTVVTSMQKIVDVKSQEANLA 180 Query: 183 ATHALKLIATLAVVAILIAVAVAVVITRGLLRQLGGEPAYAMEIAQRIAHGDLAVEVATR 242 A ++ +I ++ VA+L+++ + +VI+R + R L A+ +AQ +A GDL ++ + Sbjct: 181 AQQSITIIIAISAVALLLSIGLGIVISRSITRPLN----EAVLVAQTVASGDLTSQINVK 236 Query: 243 SNDKS-SLLHALRMMRDSLAAIVGEVRQGTDAIERASTEIASGNVDLSGRTERQASSLEE 301 S D++ LL AL+ M SL IV EVR GT + AS +IASGN+DLS RTE QASSLEE Sbjct: 237 SKDETGQLLQALKDMNQSLIGIVDEVRSGTATMATASNQIASGNMDLSSRTEEQASSLEE 296 Query: 302 TASAMEQITSAVRQSAANAEQANTLAASASEIAVTGGNMMGEVVATMEDIRQSSVKIVDI 361 TAS+ME++TS V+Q+A NA QAN+L+ SASEIAV GG ++ EVV TM I S+ KI DI Sbjct: 297 TASSMEELTSTVKQNADNARQANSLSLSASEIAVKGGQVVSEVVVTMNGINDSAKKITDI 356 Query: 362 ISVIDGIAFQTNILALNAAVEAARAGEGGRGFAVVASEVRTLAQRSAAAAKEIKELIGAS 421 I VIDGIAFQTNILALNAAVEAARAGE GRGFAVVASEVR LAQRSAAAAKEIK LI S Sbjct: 357 IGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAAAAKEIKALIDDS 416 Query: 422 VAKVESGSGRVKGAGQTMDEIVASVRKVTDVIAEISLSSREQSEGIEQVNDAIGHMDEAT 481 V +V++GS V AG TM E+V SV++VTD++AEI +S+EQS GIEQVN AI MD T Sbjct: 417 VGRVDTGSKLVVQAGSTMTEVVDSVKRVTDIMAEIMAASQEQSAGIEQVNQAIAQMDHVT 476 Query: 482 QQNSALVEQAAAAAEALTSQAGALARLVSTFKLAPAA 518 QQN+ALVE+AAAAA +L QA L + VS FK+ +A Sbjct: 477 QQNAALVEEAAAAAGSLKDQAVKLEQTVSVFKIDASA 513