BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0476.p (517 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775130.1| hypothetical protein Hsero_1709 [Herbaspiril... 718 0.0 ref|YP_003774788.1| hypothetical protein Hsero_1364 [Herbaspiril... 533 e-149 ref|YP_003375709.1| hypothetical protein XALc_1211 [Xanthomonas ... 477 e-132 ref|ZP_06729511.1| conserved hypothetical protein [Xanthomonas f... 427 e-117 gb|AEL06908.1| putative signal protein with EAL domain [Xanthomo... 426 e-117 >ref|YP_003775130.1| hypothetical protein Hsero_1709 [Herbaspirillum seropedicae SmR1] gb|ADJ63222.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 598 Score = 718 bits (1853), Expect = 0.0, Method: Composition-based stats. Identities = 359/512 (70%), Positives = 414/512 (80%) Query: 2 SFCAHAILSRTGLVVLDAHRDPRFRDNPLVTGAPHIRFYAGAPLVSPQGHALGTLCLIDH 61 SFC HAI +R G+VV DA +D RF + LVTGAP IRFYAGAPLV+PQG +LGTLC+ID Sbjct: 83 SFCNHAIQTRHGMVVTDALQDARFSRHALVTGAPFIRFYAGAPLVTPQGLSLGTLCIIDS 142 Query: 62 RPRQYFSPSDQGRLEQLAAMVMERLEQLRNRGYTDHVTSLPNRARLMEVLRARAHAQGVG 121 RPR F S +L QLAA+VMERLEQLRNRGY DHVT+LPNRARLMEVLR R HA+ Sbjct: 143 RPRPDFGASQFAQLNQLAAIVMERLEQLRNRGYIDHVTALPNRARLMEVLRVRGHARPGA 202 Query: 122 GAPCAALGIDVCSREYLFDMVKALGWDYAESFLVQVSRALCEALDGQPVYRVTTTTFVFL 181 AA+ +D+C REYLFDMVKALGWDYAE FL++VSR L L P+YRVTTTTFV+L Sbjct: 203 SGADAAVAVDICPREYLFDMVKALGWDYAEGFLMEVSRTLRRVLGTLPLYRVTTTTFVYL 262 Query: 182 HDGSAAQRQEHIANVRQQFVQSLEIHGIPHQLDIAIGVLPAVDEIAGSDVVRSLLTVIDV 241 + + AQR+ IA++ Q+F +LE GIPH LDIAIGVLP ++++G DVVRSLLTVIDV Sbjct: 263 DETAPAQRRRRIADIEQRFTPALEFQGIPHLLDIAIGVLPMEEDVSGGDVVRSLLTVIDV 322 Query: 242 SREEGVCPRQFESVHAENQRNAFWLLSALPMAFKAADELSLHYQPKVRLRDGSCVGVEAL 301 SREEGV PR FESVHAE QR AFWLL+ALPMA DEL LH+QPKVRLRDG+CVGVEAL Sbjct: 323 SREEGVSPRLFESVHAEKQRYAFWLLAALPMALTTPDELVLHFQPKVRLRDGACVGVEAL 382 Query: 302 IRWQHPVLGHISPAVFIALAEKTAQIRQITAWVVRHAVAQAAQWHARGLVVPIAINTSAR 361 IRW HP+ G+I P VFI LAEKT QIRQ+TAWV+R VAQ A+W G +P+A N SAR Sbjct: 383 IRWHHPIHGNIPPDVFIPLAEKTGQIRQVTAWVLRQVVAQVARWLKSGRALPVAFNASAR 442 Query: 362 DFESDELLRLLASQLKQHAVPPGLIEIEFTESAMASNPEVVRQRVQAIRELGVQVAIDDF 421 DF+SDEL LLA QLK H VPP LIEIEFTE AMA++P+ VRQRVQA+RELGV+VAIDDF Sbjct: 443 DFDSDELRELLAQQLKLHKVPPALIEIEFTEHAMANHPQQVRQRVQALRELGVKVAIDDF 502 Query: 422 GSGFSNLSYLKSIPADIMKIDRSFIRSLAEDEADQVIVPTIIHLAHQLGFSVVAEGVESE 481 G+GFSNLSYLK+IPAD MKIDRSFI L +DEADQ+IVP+I+HLAH LGFSVVAEG+ESE Sbjct: 503 GAGFSNLSYLKNIPADTMKIDRSFIHRLLDDEADQLIVPSILHLAHNLGFSVVAEGLESE 562 Query: 482 RTARILHHLGCDFAQGYAIARPMPAEDLEEWL 513 RTA +L HLGCD+ QGYAIARPMP +LE WL Sbjct: 563 RTATLLRHLGCDYGQGYAIARPMPLAELEAWL 594 >ref|YP_003774788.1| hypothetical protein Hsero_1364 [Herbaspirillum seropedicae SmR1] gb|ADJ62880.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 606 Score = 533 bits (1374), Expect = e-149, Method: Composition-based stats. Identities = 279/522 (53%), Positives = 364/522 (69%), Gaps = 8/522 (1%) Query: 2 SFCAHAILSRTGLVVLDAHRDPRFRDNPLVTGAPHIRFYAGAPLVSPQGHALGTLCLIDH 61 SFCAHAI+ +V+ DA +D RF NPLV G P IRFYAGA L + G ALGTLCLI Sbjct: 87 SFCAHAIVQAQTMVIPDARQDERFAGNPLVLGEPGIRFYAGAALRTADGVALGTLCLIGK 146 Query: 62 RPRQYFSPSDQGRLEQLAAMVMERLEQLRNRGYTDHVTSLPNRARLM-EVLRARAHAQGV 120 PR FS DQ RLE+LAA+VM RL+ LR Y D +TSLPNR+RL+ +V +AHA G+ Sbjct: 147 SPRSQFSEVDQDRLERLAAIVMARLDMLRMGSYVDSLTSLPNRSRLVADVQLMQAHATGL 206 Query: 121 GGAP-----CAALGIDVCSREYLFDMVKALGWDYAESFLVQVSRALCEALDGQPVYRVTT 175 G AA+ +DVC YL DMVKALGWDY E FL+Q LC+AL +YR+ Sbjct: 207 AGLDELPRRLAAVAVDVCDHTYLTDMVKALGWDYVEGFLIQAKERLCQALGEMALYRIGA 266 Query: 176 TTFVFLHDGSAAQRQEHIANVRQQFVQSLEIHGIPHQLDIAIGVLPAVDEIAGSDVVRSL 235 T+F +L + Q+ +RQ F ++E GIPH L++++G++P +++V SL Sbjct: 267 TSFAYLD--RCDRWQDQADRIRQAFAATVEHQGIPHHLEVSVGIVPLSQCPDAAELVPSL 324 Query: 236 LTVIDVSREEGVCPRQFESVHAENQRNAFWLLSALPMAFKAADELSLHYQPKVRLRDGSC 295 LT DV+R +G Q+E + Q+++F LLS++P A + D+L L +QPKV L G C Sbjct: 325 LTAADVARADGHLQCQYEQPLGQMQKHSFELLSSIPAALLSTDQLWLEFQPKVSLSTGRC 384 Query: 296 VGVEALIRWQHPVLGHISPAVFIALAEKTAQIRQITAWVVRHAVAQAAQWHARGLVVPIA 355 GVEAL+RW+HP+ G ISPA+FI LAEKTA IRQ+T WV++ + QA W RG+ +P+A Sbjct: 385 AGVEALLRWRHPIHGVISPALFIPLAEKTALIRQVTLWVLQRGIEQATAWARRGVAIPVA 444 Query: 356 INTSARDFESDELLRLLASQLKQHAVPPGLIEIEFTESAMASNPEVVRQRVQAIRELGVQ 415 IN SARDF++D+LL+LL L+QH +P GLIEIEFTESAM+ NPE + R+Q I+ LGV+ Sbjct: 445 INVSARDFDNDDLLQLLGRLLEQHRIPAGLIEIEFTESAMSRNPEKLYGRIQEIKRLGVK 504 Query: 416 VAIDDFGSGFSNLSYLKSIPADIMKIDRSFIRSLAEDEADQVIVPTIIHLAHQLGFSVVA 475 VAIDDFG+GFSNLSYLK IPAD +K+D+SFI + D +DQ IVP++IHL +LGF+VVA Sbjct: 505 VAIDDFGAGFSNLSYLKHIPADYLKLDQSFILRMESDYSDQQIVPSMIHLGQRLGFAVVA 564 Query: 476 EGVESERTARILHHLGCDFAQGYAIARPMPAEDLEEWLGMVQ 517 EGVE+E+T RIL HLGCDF QG+ IARPM A D +W+G Q Sbjct: 565 EGVENEKTRRILQHLGCDFGQGFGIARPMNAADCWDWIGARQ 606 >ref|YP_003375709.1| hypothetical protein XALc_1211 [Xanthomonas albilineans GPE PC73] emb|CBA15721.1| hypothetical protein XALc_1211 [Xanthomonas albilineans] Length = 595 Score = 477 bits (1228), Expect = e-132, Method: Composition-based stats. Identities = 250/514 (48%), Positives = 335/514 (65%), Gaps = 2/514 (0%) Query: 2 SFCAHAILSRTGLVVLDAHRDPRFRDNPLVTGAPHIRFYAGAPLVSPQGHALGTLCLIDH 61 +FCA+ I S LVVLDA DPRFRD+ LVTG P +RFYAGAPL+ G LG LC++D Sbjct: 77 AFCAYTIQSTELLVVLDAREDPRFRDSALVTGPPFVRFYAGAPLLMADGANLGALCVVDT 136 Query: 62 RPRQYFSPSDQGRLEQLAAMVMERLEQLRNRGYTDHVTSLPNRARLMEVLRARAHAQGVG 121 PRQ F S + LE L ++M R++ LRN G+ D +T LPNR R E L QG Sbjct: 137 EPRQDFDESSRKTLEDLRDILMIRIDALRNAGFIDPLTQLPNRLRFNEDLTMWLSLQGTQ 196 Query: 122 GAPCAALGIDVCSREYLFDMVKALGWDYAESFLVQVSRALCEALDGQPVYRVTTTTFVFL 181 A+ +DVC +Y +MVKALGW+YAE +L+ L +ALDG P+YR+ TTTFVF+ Sbjct: 197 QHN-TAVAVDVCGTKYFREMVKALGWEYAEGYLLSSRDRLVQALDGIPLYRIDTTTFVFV 255 Query: 182 HDGSAAQRQEHIAN-VRQQFVQSLEIHGIPHQLDIAIGVLPAVDEIAGSDVVRSLLTVID 240 +GS + + V F ++E GIPH ++G + ++ + +RSL T +D Sbjct: 256 IEGSDEDKLAQWCDRVCDAFTLAIEHQGIPHVATPSLGAVYLDGGLSANHTLRSLTTAVD 315 Query: 241 VSREEGVCPRQFESVHAENQRNAFWLLSALPMAFKAADELSLHYQPKVRLRDGSCVGVEA 300 ++R+ G+ +E H NQR+AF +L+ALP A A +LSLHYQP+V + G+C GVEA Sbjct: 316 MARQRGLRWSLYELSHDANQRSAFRILAALPEALSAHGQLSLHYQPRVSMHSGACTGVEA 375 Query: 301 LIRWQHPVLGHISPAVFIALAEKTAQIRQITAWVVRHAVAQAAQWHARGLVVPIAINTSA 360 L+RW+HP+LG ++P FI LAEKTA + QITAWV++ +AQAA W RG +++N SA Sbjct: 376 LLRWEHPLLGAVAPNNFIPLAEKTALMPQITAWVLQTGIAQAALWQQRGHRFAVSLNVSA 435 Query: 361 RDFESDELLRLLASQLKQHAVPPGLIEIEFTESAMASNPEVVRQRVQAIRELGVQVAIDD 420 D E + + L S L QHA+ PG IEIEFTESAM +P+ V +++Q I LGV++AIDD Sbjct: 436 VDLEQADFITNLRSLLAQHALAPGAIEIEFTESAMIRHPQRVAEQLQQISALGVKIAIDD 495 Query: 421 FGSGFSNLSYLKSIPADIMKIDRSFIRSLAEDEADQVIVPTIIHLAHQLGFSVVAEGVES 480 FG+G+SNL YLKSIPA +KID+SFIR+L +D V+VP +I L H G VVAEG+ES Sbjct: 496 FGTGYSNLGYLKSIPAHALKIDQSFIRTLPASRSDSVLVPAMIRLGHDFGQQVVAEGIES 555 Query: 481 ERTARILHHLGCDFAQGYAIARPMPAEDLEEWLG 514 E ++L GCD QGY IA+PM A L+ WL Sbjct: 556 ETVYQMLRDWGCDEGQGYWIAKPMSAAALDAWLA 589 >ref|ZP_06729511.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gb|EFF49366.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 618 Score = 427 bits (1097), Expect = e-117, Method: Composition-based stats. Identities = 239/514 (46%), Positives = 314/514 (61%), Gaps = 2/514 (0%) Query: 2 SFCAHAILSRTGLVVLDAHRDPRFRDNPLVTGAPHIRFYAGAPLVSPQGHALGTLCLIDH 61 +FCAHAI S +VV DA DPRF +NPLV G P IRFYAGAPL GH++GTLC+I Sbjct: 83 AFCAHAIRSDGVMVVPDAQLDPRFCNNPLVLGPPFIRFYAGAPLTLRDGHSIGTLCVIGT 142 Query: 62 RPRQYFSPSDQGRLEQLAAMVMERLEQLRNRGYTDHVTSLPNRARLMEVLRARAHAQGVG 121 PR + LE L + + R+E LR+ Y D T LPNR+R E L + Sbjct: 143 SPRPGLDQAAITHLEGLRDLAVLRVENLRSTTYRDGPTGLPNRSRFSEDLDTWLSQRDTA 202 Query: 122 GAPCAALGIDVCSREYLFDMVKALGWDYAESFLVQVSRALCEALDGQPV-YRVTTTTFVF 180 A A+ IDVC +Y DMVKALGW+YA+ ++ R L L G + YR+ TTF F Sbjct: 203 PA-TTAVAIDVCGSDYFRDMVKALGWEYADGYVALAQRRLAAYLPGGTLLYRLDPTTFGF 261 Query: 181 LHDGSAAQRQEHIANVRQQFVQSLEIHGIPHQLDIAIGVLPAVDEIAGSDVVRSLLTVID 240 L + V + F + LE GIPH +IG + +D +RSL T +D Sbjct: 262 LAQAEGQRLATLCTKVSKAFTEPLEHQGIPHTAVASIGAVSLQSSYGAADTIRSLTTSVD 321 Query: 241 VSREEGVCPRQFESVHAENQRNAFWLLSALPMAFKAADELSLHYQPKVRLRDGSCVGVEA 300 ++RE + +E H QRN F LL+ALP A +A +L LH+QP+V L D CVGVEA Sbjct: 322 IARERCLPWSMYERKHDVAQRNTFRLLAALPAALDSASQLRLHFQPRVDLHDHRCVGVEA 381 Query: 301 LIRWQHPVLGHISPAVFIALAEKTAQIRQITAWVVRHAVAQAAQWHARGLVVPIAINTSA 360 L+RWQHP++G + P+ FI +AEKTA I +ITAWV+ + +AQAA+W +GL +A+N SA Sbjct: 382 LLRWQHPMIGPVMPSDFIPMAEKTALINRITAWVIDNGIAQAARWQQQGLDFNLALNVSA 441 Query: 361 RDFESDELLRLLASQLKQHAVPPGLIEIEFTESAMASNPEVVRQRVQAIRELGVQVAIDD 420 D + LL L +H + P +EIEFTESAM +P+ + +++ AI LGV +AIDD Sbjct: 442 ADLDRPGFAGLLRRGLDRHKLDPRRLEIEFTESAMIRHPDHLAEQLAAIAALGVHIAIDD 501 Query: 421 FGSGFSNLSYLKSIPADIMKIDRSFIRSLAEDEADQVIVPTIIHLAHQLGFSVVAEGVES 480 FG+G+SN SYLK +PA +KID+SFIRSL + + D+ +VP +I L H LG VVAEG+ES Sbjct: 502 FGTGYSNFSYLKQLPASSLKIDQSFIRSLPDSQTDRTLVPAMIQLGHSLGQRVVAEGIES 561 Query: 481 ERTARILHHLGCDFAQGYAIARPMPAEDLEEWLG 514 L GCD QGY IA+PMPA LE WLG Sbjct: 562 AEAYAQLRAWGCDEGQGYWIAKPMPAAALETWLG 595 >gb|AEL06908.1| putative signal protein with EAL domain [Xanthomonas campestris pv. raphani 756C] Length = 581 Score = 426 bits (1095), Expect = e-117, Method: Composition-based stats. Identities = 238/514 (46%), Positives = 319/514 (62%), Gaps = 3/514 (0%) Query: 2 SFCAHAILSRTGLVVLDAHRDPRFRDNPLVTGAPHIRFYAGAPLVSPQGHALGTLCLIDH 61 +FCAHA+ S LV+ DA DPRF +NPLV GAPHIRFYAGAPL GH +GTLC+I Sbjct: 46 AFCAHALRSDDVLVIPDALLDPRFCNNPLVLGAPHIRFYAGAPLKLRDGHTIGTLCVIGT 105 Query: 62 RPRQYFSPSDQGRLEQLAAMVMERLEQLRNRGYTDHVTSLPNRARLMEVLRARAHAQGVG 121 PR + +LE L + + R+E LR+ Y D T LPNRAR E L A Q Sbjct: 106 SPRAGLDAEQRIQLEGLRDLAVLRVENLRSSTYRDGPTGLPNRARFSEDLDA-VLLQRTA 164 Query: 122 GAPCAALGIDVCSREYLFDMVKALGWDYAESFLVQVSRALCEALD-GQPVYRVTTTTFVF 180 + A+ +D+C +Y DMVKALGWDYA+ ++ + L L G +YR+ TTF F Sbjct: 165 DSAATAIAVDLCGSDYFRDMVKALGWDYADGYVALAYKRLISKLPAGTALYRLDPTTFAF 224 Query: 181 LHDGSAAQRQEHI-ANVRQQFVQSLEIHGIPHQLDIAIGVLPAVDEIAGSDVVRSLLTVI 239 + + R + + + + FV LE GIPH +IG + +D +RSL T + Sbjct: 225 MVTTADPLRLSALCSKISKGFVAPLEHQGIPHTAVASIGAVLLETSYGAADTLRSLTTSV 284 Query: 240 DVSREEGVCPRQFESVHAENQRNAFWLLSALPMAFKAADELSLHYQPKVRLRDGSCVGVE 299 DV+RE + +E H QRN F LL+ALP A ++++L LHYQP+V L D CV VE Sbjct: 285 DVAREHCLTWSLYERKHDVVQRNTFRLLAALPAALASSNQLRLHYQPRVDLHDHRCVAVE 344 Query: 300 ALIRWQHPVLGHISPAVFIALAEKTAQIRQITAWVVRHAVAQAAQWHARGLVVPIAINTS 359 AL+RWQHP++G + P+ FI +AEKTA I +ITAWV+ +AQAA+W +GL +A+N S Sbjct: 345 ALLRWQHPMIGPVMPSDFIPMAEKTALINRITAWVIDQGIAQAARWQQQGLDFNLALNVS 404 Query: 360 ARDFESDELLRLLASQLKQHAVPPGLIEIEFTESAMASNPEVVRQRVQAIRELGVQVAID 419 A D + + LL L +H + P +EIEFTESAM +PE + +++ A+ LGV +AID Sbjct: 405 AADLDQPGFVGLLRRGLDRHKLDPRRLEIEFTESAMIRHPEHLSEQLAAVAALGVHIAID 464 Query: 420 DFGSGFSNLSYLKSIPADIMKIDRSFIRSLAEDEADQVIVPTIIHLAHQLGFSVVAEGVE 479 DFG+G+SN SYLK +PA +KID+SF+RSL + D+ +VP +I L H LG VVAEG+E Sbjct: 465 DFGTGYSNFSYLKQLPASSLKIDQSFVRSLPDSRTDRTLVPAMIQLGHSLGQRVVAEGIE 524 Query: 480 SERTARILHHLGCDFAQGYAIARPMPAEDLEEWL 513 S + L GCD QGY IA+PMPA LE WL Sbjct: 525 SAQAYAQLRSWGCDEGQGYWIAKPMPAAALEAWL 558