BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0475.p (250 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775131.1| GGDEF family protein [Herbaspirillum seroped... 333 2e-89 ref|YP_003775115.1| GGDEF family protein [Herbaspirillum seroped... 314 1e-83 ref|YP_003692473.1| GAF sensor protein [Starkeya novella DSM 506... 146 2e-33 ref|YP_532349.1| putative GAF sensor protein [Rhodopseudomonas p... 140 2e-31 ref|NP_763217.1| GGDEF domain-containing protein [Vibrio vulnifi... 139 4e-31 >ref|YP_003775131.1| GGDEF family protein [Herbaspirillum seropedicae SmR1] gb|ADJ63223.1| GGDEF family protein [Herbaspirillum seropedicae SmR1] Length = 250 Score = 333 bits (854), Expect = 2e-89, Method: Composition-based stats. Identities = 174/246 (70%), Positives = 200/246 (81%) Query: 1 MGRAVPSDDKEMPPGDPAMTSREAARLLGVSITTAQMWMESGMLASWKTPGGHRRTRLSS 60 MGRA S + + PP DPAMTSREAAR+LGVSITTAQMWME+GMLASWKTPGGHRRTRLSS Sbjct: 1 MGRAARSHESDAPPSDPAMTSREAARMLGVSITTAQMWMETGMLASWKTPGGHRRTRLSS 60 Query: 61 VMTLLGHREVKQPEPTAGHAGPQIEVPYPVSPNEPERARFVEQTMEDTHSEARFHRLTWL 120 VM+LLGH KQ P A + P S +E +A + Q T +EARFHRLTWL Sbjct: 61 VMSLLGHNGAKQSGPAAVQPAAVAQTPEAASTDEARQAPLMAQAKTGTQAEARFHRLTWL 120 Query: 121 ASELLDVPIALVTFLTTELQIFRAAHGLNITSTPRSWAFCNYAVMQEDIFTVSDATKDAR 180 ASELL+VPIALVTF T ELQIF AAHGLNI +TPRSWAFCNYA M ED+FTV+DA+KDAR Sbjct: 121 ASELLEVPIALVTFQTAELQIFHAAHGLNIAATPRSWAFCNYADMDEDVFTVADASKDAR 180 Query: 181 FVNNPMVTGAPFIRFYAGIRLMYQGRAFGSLCVIDTEPRILRAHERQALEELAALATDIL 240 F NNPMVT APFIRFYA + LMYQG+AFGSLC+IDTE R+LR+ ER+AL+ELAALATD++ Sbjct: 181 FANNPMVTSAPFIRFYAAVPLMYQGKAFGSLCIIDTEARLLRSQERRALQELAALATDMM 240 Query: 241 SLQLLE 246 +LQL+E Sbjct: 241 ALQLME 246 >ref|YP_003775115.1| GGDEF family protein [Herbaspirillum seropedicae SmR1] gb|ADJ63207.1| GGDEF family protein [Herbaspirillum seropedicae SmR1] Length = 236 Score = 314 bits (804), Expect = 1e-83, Method: Composition-based stats. Identities = 157/235 (66%), Positives = 189/235 (80%), Gaps = 7/235 (2%) Query: 16 DPAMTSREAARLLGVSITTAQMWMESGMLASWKTPGGHRRTRLSSVMTLLGHREVKQPEP 75 DP MTSREAAR+LGVSITTAQ+WMESGMLASWKTPGGHRRTR SSVM+L+GH+EV P Sbjct: 5 DPVMTSREAARMLGVSITTAQIWMESGMLASWKTPGGHRRTRRSSVMSLIGHQEV----P 60 Query: 76 TAGHA-GPQI--EVPYPVSPNEPERARFVEQTMEDTHSEARFHRLTWLASELLDVPIALV 132 G GP+ + YP E +RA FVE+ +E + + RF RLTWLASELLD PI+L+ Sbjct: 61 AVGEEDGPEELEALAYPAGAEEGDRAAFVERIIERSAPDTRFDRLTWLASELLDAPISLI 120 Query: 133 TFLTTELQIFRAAHGLNITSTPRSWAFCNYAVMQEDIFTVSDATKDARFVNNPMVTGAPF 192 TFLT+ELQIF++AHGL++ TPR+WAFCNY + E +F VSD D RF+NNP+VT PF Sbjct: 121 TFLTSELQIFKSAHGLSLNETPRAWAFCNYTIAHEGVFAVSDTQTDMRFMNNPLVTSTPF 180 Query: 193 IRFYAGIRLMYQGRAFGSLCVIDTEPRILRAHERQALEELAALATDILSLQLLEA 247 RFYAG+RLMY+G+AFGSLCVIDTEPRILR+HE+QALEELA LA+DIL L +LE+ Sbjct: 181 FRFYAGVRLMYEGKAFGSLCVIDTEPRILRSHEQQALEELAMLASDILRLHILES 235 >ref|YP_003692473.1| GAF sensor protein [Starkeya novella DSM 506] gb|ADH87854.1| putative GAF sensor protein [Starkeya novella DSM 506] Length = 378 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 78/166 (46%), Positives = 110/166 (66%), Gaps = 2/166 (1%) Query: 83 QIEVPYPVSPNEPERARFVEQT-MEDTHSEARFHRLTWLASELLDVPIALVTFLTTELQI 141 Q ++P+P++ NE +R +E++ + DT E F RLTWLA+ LD PIAL+T LT Q Sbjct: 184 QDDLPFPIALNESQRLVALERSGLLDTAPEEAFDRLTWLAARNLDAPIALLTLLTPTRQW 243 Query: 142 FRAAHGLNITSTPRSWAFCNYAVMQEDIFTVSDATKDARFVNNPMVTGAPFIRFYAGIRL 201 F++ GL++ TPRSWAFCN+ ++Q+ +F+V D ++D RF NP V G P RFYAG + Sbjct: 244 FKSRFGLDLPETPRSWAFCNHTILQKGVFSVEDLSRDPRFAKNPAVQGQPLFRFYAGAPV 303 Query: 202 M-YQGRAFGSLCVIDTEPRILRAHERQALEELAALATDILSLQLLE 246 M +G GSLCVID +PR L E Q L LAALA+D + L+ ++ Sbjct: 304 MDNEGFTVGSLCVIDYKPRKLDEREAQTLMALAALASDEVRLRAID 349 Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 29/59 (49%), Positives = 40/59 (67%) Query: 19 MTSREAARLLGVSITTAQMWMESGMLASWKTPGGHRRTRLSSVMTLLGHREVKQPEPTA 77 +T+ + ARLLGVSI TAQ+ +E G + SWKTPGGHRR + +M L+ R + P+A Sbjct: 9 LTTADTARLLGVSIRTAQLLIEGGSVPSWKTPGGHRRVYRADIMALIEKRAQDEALPSA 67 >ref|YP_532349.1| putative GAF sensor protein [Rhodopseudomonas palustris BisB18] gb|ABD88030.1| putative GAF sensor protein [Rhodopseudomonas palustris BisB18] Length = 363 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 72/160 (45%), Positives = 105/160 (65%), Gaps = 2/160 (1%) Query: 86 VPYPVSPNEPERARFVEQT-MEDTHSEARFHRLTWLASELLDVPIALVTFLTTELQIFRA 144 +P+P++ NE +R ++++ + DT +E F R+TWLAS +L PI+L+T LT Q F++ Sbjct: 185 LPFPIAANEAQRLIALQRSGLVDTAAEKSFDRVTWLASHVLGTPISLMTLLTPSRQWFKS 244 Query: 145 AHGLNITSTPRSWAFCNYAVMQEDIFTVSDATKDARFVNNPMVTGAPFIRFYAGIRLM-Y 203 GL++ TPRSWAFCN ++Q D+F V + D RF +NP V G P RFYAG ++ Sbjct: 245 RQGLDMVETPRSWAFCNQTILQRDVFAVENLALDRRFADNPAVAGDPHFRFYAGAPVLDP 304 Query: 204 QGRAFGSLCVIDTEPRILRAHERQALEELAALATDILSLQ 243 G A GS+CVID EPR L + ++L LAALA+D + L+ Sbjct: 305 NGFALGSVCVIDYEPRRLDRDQTESLRALAALASDQVRLR 344 Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 32/60 (53%), Positives = 43/60 (71%), Gaps = 6/60 (10%) Query: 19 MTSREAARLLGVSITTAQMWMESGMLASWKTPGGHRRTRLSSVMTLLGHREVKQP-EPTA 77 +T+ +AA+LLG+S+ TAQ+ +ESG L SWKTPGGHRR + VM L+ KQP +P A Sbjct: 6 VTTSQAAKLLGISVRTAQLLVESGALTSWKTPGGHRRVYRADVMALM-----KQPNQPPA 60 >ref|NP_763217.1| GGDEF domain-containing protein [Vibrio vulnificus CMCP6] gb|AAO08207.1| FOG: GGDEF domain protein [Vibrio vulnificus CMCP6] Length = 322 Score = 139 bits (350), Expect = 4e-31, Method: Composition-based stats. Identities = 71/151 (47%), Positives = 98/151 (64%), Gaps = 3/151 (1%) Query: 89 PVSP-NEPER-ARFVEQTMEDTHSEARFHRLTWLASELLDVPIALVTFLTTELQIFRAAH 146 P P NEP+R A + DT +E RF R+T +A L DVPIALV+ + + Q F++ Sbjct: 4 PKKPDNEPQRIADLHSLNILDTAAEERFDRVTRIARRLFDVPIALVSLVDEDRQWFKSCF 63 Query: 147 GLNITSTPRSWAFCNYAVMQEDIFTVSDATKDARFVNNPMVTGAPFIRFYAGIRLMYQ-G 205 GLN + TPR +FC +A++ D V DA++DARF +NP+VTG P IRFYAG+ LM++ Sbjct: 64 GLNASETPRDISFCGHAILGADTLIVEDASQDARFADNPLVTGEPHIRFYAGVPLMFEHS 123 Query: 206 RAFGSLCVIDTEPRILRAHERQALEELAALA 236 G+LC+IDT+PR L ER L +LA +A Sbjct: 124 SCLGTLCIIDTKPRTLNEDERLDLIDLAKMA 154