BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0472.p (359 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773987.1| methionine synthase II protein [Herbaspirill... 648 0.0 ref|YP_786115.1| 5-methyltetrahydropteroyltriglutamate--homocyst... 624 e-177 ref|YP_587203.1| 5-methyltetrahydropteroyltriglutamate--homocyst... 623 e-176 ref|ZP_06064249.1| 5-methyltetrahydropteroyltriglutamate-homocys... 622 e-176 ref|ZP_06065908.1| 5-methyltetrahydropteroyltriglutamate-homocys... 621 e-176 >ref|YP_003773987.1| methionine synthase II protein [Herbaspirillum seropedicae SmR1] gb|ADJ62079.1| methionine synthase II protein [Herbaspirillum seropedicae SmR1] Length = 342 Score = 648 bits (1671), Expect = 0.0, Method: Composition-based stats. Identities = 318/342 (92%), Positives = 332/342 (97%) Query: 18 VKKLLPTSTAGSLPKPVWLAEPEKLWSPWKLQGDELQEAKRDALRLSLQEQQHAGIDIVS 77 +KK LPTSTAGSLPKP WLAEPEKLWSPWKLQG EL++AKRDALRLSLQEQQHAGIDIVS Sbjct: 1 MKKRLPTSTAGSLPKPAWLAEPEKLWSPWKLQGAELEDAKRDALRLSLQEQQHAGIDIVS 60 Query: 78 DGEQTRQHFVTTFIEHLDGVDFAKRETVRIRNRYDASVPTVVGAVSRQKPVFVEDARFLR 137 DGEQTRQHFVTTFIEHLDGVDFAKRETVRIRNRYDASVPTVVGAVSR KPVFV+DARFLR Sbjct: 61 DGEQTRQHFVTTFIEHLDGVDFAKRETVRIRNRYDASVPTVVGAVSRPKPVFVDDARFLR 120 Query: 138 SQTEQPIKWALPGPMTMIDTLYDNHYKSREKLAWEFATILNQEARELEAAGVDIIQFDEP 197 SQT+QPIKWALPGPMTMIDTLYD+HYKSREKLAWEFAT+LNQEARELEAAGVDIIQFDEP Sbjct: 121 SQTDQPIKWALPGPMTMIDTLYDSHYKSREKLAWEFATLLNQEARELEAAGVDIIQFDEP 180 Query: 198 AFNVFFDEVNDWGVAALERAIEGLKCETAVHICYGYGIKANTDWKKTLGSEWRQYEETFP 257 AFNVFFDEVNDWGVA LERAIEGLKCETAVHICYGYGIKANTDWKKTLGSEWRQYEETFP Sbjct: 181 AFNVFFDEVNDWGVATLERAIEGLKCETAVHICYGYGIKANTDWKKTLGSEWRQYEETFP 240 Query: 258 KLQASNIDIVSLECHNARVPMDLIELIRGKKVMVGAIDVASHAVETPEEVAATLRRALQF 317 +LQAS+IDIVSLECHNARVPMDLIELIRGKKVMVGAIDVA+H VE+ EEVAATLRRALQF Sbjct: 241 RLQASSIDIVSLECHNARVPMDLIELIRGKKVMVGAIDVANHGVESAEEVAATLRRALQF 300 Query: 318 VAADKLYPSTNCGMAPLPREVARGKLSALRAGAEMVRRELGA 359 V ADKLYP TNCGMAPLPR+VARGKL+AL AGAE+VRRELGA Sbjct: 301 VEADKLYPCTNCGMAPLPRDVARGKLAALSAGAEIVRRELGA 342 >ref|YP_786115.1| 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [Bordetella avium 197N] emb|CAJ49204.1| putative 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferase [Bordetella avium 197N] Length = 342 Score = 624 bits (1609), Expect = e-177, Method: Composition-based stats. Identities = 306/342 (89%), Positives = 319/342 (93%) Query: 18 VKKLLPTSTAGSLPKPVWLAEPEKLWSPWKLQGDELQEAKRDALRLSLQEQQHAGIDIVS 77 +KKLLPTSTAGSLPKP WLA+PE LWSPWKL+GD L E K DALRLSLQEQQHAGIDIVS Sbjct: 1 MKKLLPTSTAGSLPKPSWLAQPETLWSPWKLEGDGLAEGKHDALRLSLQEQQHAGIDIVS 60 Query: 78 DGEQTRQHFVTTFIEHLDGVDFAKRETVRIRNRYDASVPTVVGAVSRQKPVFVEDARFLR 137 DGEQTRQHFVTTFIEHL GVDFAKRETVRIRNRYDASVPTVVGAVSR++PVFVEDARFLR Sbjct: 61 DGEQTRQHFVTTFIEHLSGVDFAKRETVRIRNRYDASVPTVVGAVSREQPVFVEDARFLR 120 Query: 138 SQTEQPIKWALPGPMTMIDTLYDNHYKSREKLAWEFATILNQEARELEAAGVDIIQFDEP 197 QT Q IKWALPGPMTMIDTLYD+HYKSREKLAWEFA ILNQEA+ELEAAGVDIIQFDEP Sbjct: 121 QQTTQAIKWALPGPMTMIDTLYDSHYKSREKLAWEFAKILNQEAKELEAAGVDIIQFDEP 180 Query: 198 AFNVFFDEVNDWGVAALERAIEGLKCETAVHICYGYGIKANTDWKKTLGSEWRQYEETFP 257 AFNVFFDEVNDWGVA LERAIEGLKCETAVHICYGYGIKANTDWKKTLGSEWRQYEE FP Sbjct: 181 AFNVFFDEVNDWGVATLERAIEGLKCETAVHICYGYGIKANTDWKKTLGSEWRQYEEAFP 240 Query: 258 KLQASNIDIVSLECHNARVPMDLIELIRGKKVMVGAIDVASHAVETPEEVAATLRRALQF 317 KLQ S I IVSLEC N+RVPMDLIELIRGKKVMVGAIDVA+H VETPEEVA TLR+ALQF Sbjct: 241 KLQQSKIGIVSLECQNSRVPMDLIELIRGKKVMVGAIDVATHTVETPEEVADTLRKALQF 300 Query: 318 VAADKLYPSTNCGMAPLPREVARGKLSALRAGAEMVRRELGA 359 V ADKLYPSTNCGMAPLPR VARGKLSAL AGAE+VR+E+ A Sbjct: 301 VDADKLYPSTNCGMAPLPRNVARGKLSALSAGAEIVRKEIAA 342 >ref|YP_587203.1| 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [Cupriavidus metallidurans CH34] gb|ABF11934.1| 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferase [Cupriavidus metallidurans CH34] Length = 342 Score = 623 bits (1606), Expect = e-176, Method: Composition-based stats. Identities = 304/342 (88%), Positives = 322/342 (94%) Query: 18 VKKLLPTSTAGSLPKPVWLAEPEKLWSPWKLQGDELQEAKRDALRLSLQEQQHAGIDIVS 77 +KKLLPTSTAGSLPKP WLA+PEKLWSPWKLQ DEL E K+DALRLSLQEQQ AGIDIVS Sbjct: 1 MKKLLPTSTAGSLPKPSWLAQPEKLWSPWKLQDDELIEGKQDALRLSLQEQQQAGIDIVS 60 Query: 78 DGEQTRQHFVTTFIEHLDGVDFAKRETVRIRNRYDASVPTVVGAVSRQKPVFVEDARFLR 137 DGEQTRQHFVTTFIE+L GVDF KRETVRIR+RYDASVPTVVGAVSRQKPVFVEDA+FLR Sbjct: 61 DGEQTRQHFVTTFIENLSGVDFEKRETVRIRDRYDASVPTVVGAVSRQKPVFVEDAKFLR 120 Query: 138 SQTEQPIKWALPGPMTMIDTLYDNHYKSREKLAWEFATILNQEARELEAAGVDIIQFDEP 197 QT QPIKWALPGPMTMIDTLYDNHYKSREKLAWEFATILNQEARELEAAGVDIIQFDEP Sbjct: 121 QQTRQPIKWALPGPMTMIDTLYDNHYKSREKLAWEFATILNQEARELEAAGVDIIQFDEP 180 Query: 198 AFNVFFDEVNDWGVAALERAIEGLKCETAVHICYGYGIKANTDWKKTLGSEWRQYEETFP 257 AFNVFFDEVNDWGVA LERAIEGLKCETAVHICYGYGIKANTDWKKTLGSEWRQYEE+FP Sbjct: 181 AFNVFFDEVNDWGVATLERAIEGLKCETAVHICYGYGIKANTDWKKTLGSEWRQYEESFP 240 Query: 258 KLQASNIDIVSLECHNARVPMDLIELIRGKKVMVGAIDVASHAVETPEEVAATLRRALQF 317 KLQ S+IDIVSLECHN+ VP+DLIELIRGKKVMVGAIDVA++ +ETPEEVA TLR+AL+F Sbjct: 241 KLQKSSIDIVSLECHNSYVPIDLIELIRGKKVMVGAIDVATNTIETPEEVANTLRKALRF 300 Query: 318 VAADKLYPSTNCGMAPLPREVARGKLSALRAGAEMVRRELGA 359 V ADKLYP TNCGMAPLPR VARGKL+AL AGAE++R EL A Sbjct: 301 VDADKLYPCTNCGMAPLPRGVARGKLNALSAGAEIIRGELSA 342 >ref|ZP_06064249.1| 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferase [Acinetobacter johnsonii SH046] gb|EEY95330.1| 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferase [Acinetobacter johnsonii SH046] Length = 348 Score = 622 bits (1603), Expect = e-176, Method: Composition-based stats. Identities = 304/339 (89%), Positives = 320/339 (94%) Query: 21 LLPTSTAGSLPKPVWLAEPEKLWSPWKLQGDELQEAKRDALRLSLQEQQHAGIDIVSDGE 80 LLPTSTAGSLPKP WLAEPEKLWSPWKL+G+ L EAK+DALRLSLQEQ HAGIDIVSDGE Sbjct: 4 LLPTSTAGSLPKPSWLAEPEKLWSPWKLEGEALLEAKQDALRLSLQEQLHAGIDIVSDGE 63 Query: 81 QTRQHFVTTFIEHLDGVDFAKRETVRIRNRYDASVPTVVGAVSRQKPVFVEDARFLRSQT 140 QTRQHFVTTFIEHLDGVDF KRETVRIRNRYDASVP+VVGAVSRQKPVFVEDA+FLRSQT Sbjct: 64 QTRQHFVTTFIEHLDGVDFEKRETVRIRNRYDASVPSVVGAVSRQKPVFVEDAKFLRSQT 123 Query: 141 EQPIKWALPGPMTMIDTLYDNHYKSREKLAWEFATILNQEARELEAAGVDIIQFDEPAFN 200 QPIKWALPGPMTMIDTLYD HYKSREKLAWEFA ILNQEARELEAAGVDIIQFDEPAFN Sbjct: 124 TQPIKWALPGPMTMIDTLYDGHYKSREKLAWEFAKILNQEARELEAAGVDIIQFDEPAFN 183 Query: 201 VFFDEVNDWGVAALERAIEGLKCETAVHICYGYGIKANTDWKKTLGSEWRQYEETFPKLQ 260 VFFDEVNDWGVA LERA+EGLKCETAVHICYGYGIKANTDWKKTLGSEWRQYEE FPKLQ Sbjct: 184 VFFDEVNDWGVATLERALEGLKCETAVHICYGYGIKANTDWKKTLGSEWRQYEEAFPKLQ 243 Query: 261 ASNIDIVSLECHNARVPMDLIELIRGKKVMVGAIDVASHAVETPEEVAATLRRALQFVAA 320 S +DI+SLEC N+RVPMDLIELIRGKKVMVGAIDVA++ VETPEEVA TLR+ALQFV A Sbjct: 244 QSKVDIISLECQNSRVPMDLIELIRGKKVMVGAIDVATNTVETPEEVANTLRKALQFVDA 303 Query: 321 DKLYPSTNCGMAPLPREVARGKLSALRAGAEMVRRELGA 359 DKLYPSTNCGMAPL REVARGKL+AL AGAE++R+EL A Sbjct: 304 DKLYPSTNCGMAPLAREVARGKLNALSAGAEIIRKELSA 342 >ref|ZP_06065908.1| 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferase [Acinetobacter junii SH205] gb|EEY93739.1| 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferase [Acinetobacter junii SH205] Length = 344 Score = 621 bits (1602), Expect = e-176, Method: Composition-based stats. Identities = 302/340 (88%), Positives = 319/340 (93%) Query: 18 VKKLLPTSTAGSLPKPVWLAEPEKLWSPWKLQGDELQEAKRDALRLSLQEQQHAGIDIVS 77 +K+LLPTSTAGSLPKP WLAEPEKLWSPWKLQ ++L EAK+DALRLSL EQ H+GIDIVS Sbjct: 3 MKRLLPTSTAGSLPKPSWLAEPEKLWSPWKLQDEQLYEAKQDALRLSLHEQLHSGIDIVS 62 Query: 78 DGEQTRQHFVTTFIEHLDGVDFAKRETVRIRNRYDASVPTVVGAVSRQKPVFVEDARFLR 137 DGEQTRQHFVTTFIEHLDGVDF KRETVRIRNRYDASVP+VVGAVSRQKPVFVEDA+FLR Sbjct: 63 DGEQTRQHFVTTFIEHLDGVDFQKRETVRIRNRYDASVPSVVGAVSRQKPVFVEDAKFLR 122 Query: 138 SQTEQPIKWALPGPMTMIDTLYDNHYKSREKLAWEFATILNQEARELEAAGVDIIQFDEP 197 QT QPIKWALPGPMTMIDTLYD HYKSREKLAWEFA ILNQEARELEAAGVDIIQFDEP Sbjct: 123 QQTNQPIKWALPGPMTMIDTLYDGHYKSREKLAWEFAKILNQEARELEAAGVDIIQFDEP 182 Query: 198 AFNVFFDEVNDWGVAALERAIEGLKCETAVHICYGYGIKANTDWKKTLGSEWRQYEETFP 257 AFNVFFDEVNDWGVA LERA+EGLKCETAVHICYGYGIKANTDWKKTLGSEWRQYEE FP Sbjct: 183 AFNVFFDEVNDWGVATLERALEGLKCETAVHICYGYGIKANTDWKKTLGSEWRQYEEAFP 242 Query: 258 KLQASNIDIVSLECHNARVPMDLIELIRGKKVMVGAIDVASHAVETPEEVAATLRRALQF 317 KLQ S IDIVSLEC N+RVPMDLIELIRGKKVMVGAIDVA++ +ETPEEVA TLR+ALQF Sbjct: 243 KLQQSKIDIVSLECQNSRVPMDLIELIRGKKVMVGAIDVATNNIETPEEVADTLRKALQF 302 Query: 318 VAADKLYPSTNCGMAPLPREVARGKLSALRAGAEMVRREL 357 V ADKLYPSTNCGMAPL R VARGKL+AL AGAE+VR+EL Sbjct: 303 VDADKLYPSTNCGMAPLSRHVARGKLNALSAGAEIVRKEL 342