BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0471.p (272 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001119666.1| transcriptional regulator, TrmB [Burkholderi... 399 e-109 ref|YP_621334.1| TrmB family transcriptional regulator [Burkhold... 380 e-103 ref|YP_366603.1| transcriptional regulator TrmB [Burkholderia sp... 377 e-102 ref|ZP_04944007.1| hypothetical protein BCPG_05587 [Burkholderia... 375 e-102 ref|YP_295920.1| transcriptional regulator TrmB [Ralstonia eutro... 370 e-100 >ref|YP_001119666.1| transcriptional regulator, TrmB [Burkholderia vietnamiensis G4] gb|ABO54831.1| transcriptional regulator, TrmB [Burkholderia vietnamiensis G4] Length = 279 Score = 399 bits (1026), Expect = e-109, Method: Composition-based stats. Identities = 228/268 (85%), Positives = 248/268 (92%) Query: 1 MTTENELIASMTRLGFTQYEAQAYTALVGQAALTGAEVSRRASMPPSKVYETLARLEARG 60 MT + ELIASMTRLGFTQYEAQAY ALVGQAALTGAEV RRASMP SKVYETLARLEARG Sbjct: 1 MTADAELIASMTRLGFTQYEAQAYAALVGQAALTGAEVGRRASMPASKVYETLARLEARG 60 Query: 61 AVLVNRSEPVLYSAVPHTALLAELRSRFNADIESAAAALDRLPVQQEPGLVWSLSGTKAI 120 AVLVNRSEPV Y+AVPHT+LLAELRSRFNAD+ESAA+ALDRLPVQQEPGLVWSLSG ++I Sbjct: 61 AVLVNRSEPVRYAAVPHTSLLAELRSRFNADLESAASALDRLPVQQEPGLVWSLSGAESI 120 Query: 121 VQAFAHSISSAQKSLFAGIWDEELDELGPLLEAASARGVDTHVAIYGKGTLTGPQTYDMA 180 VQAFA IS+AQ SLFAGIWDEELDELGPLLEAAS RG+DTHVAIYGK TL GP TYDMA Sbjct: 121 VQAFARVISNAQTSLFAGIWDEELDELGPLLEAASGRGIDTHVAIYGKRTLKGPHTYDMA 180 Query: 181 ECGASARLRLAGRRLAVLVADDESAVVAEFGDSSPDQATLTTNPVIALLAVEYIKADVSG 240 ECGASARLRL+GRRLAV+VAD++ AVVAEFGD +PDQAT+TTNPVIALLAVEYIKADVSG Sbjct: 181 ECGASARLRLSGRRLAVVVADEDDAVVAEFGDHTPDQATVTTNPVIALLAVEYIKADVSG 240 Query: 241 RLMINAMSAASYKKLLATPAMRAMLAPV 268 RLMI+AM +A+Y+KLL + AMRAML PV Sbjct: 241 RLMIDAMPSAAYEKLLTSRAMRAMLRPV 268 >ref|YP_621334.1| TrmB family transcriptional regulator [Burkholderia cenocepacia AU 1054] ref|YP_839998.1| transcriptional regulator, TrmB [Burkholderia cenocepacia HI2424] gb|ABF76361.1| transcriptional regulator, TrmB [Burkholderia cenocepacia AU 1054] gb|ABK13105.1| transcriptional regulator, TrmB [Burkholderia cenocepacia HI2424] Length = 272 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 209/271 (77%), Positives = 231/271 (85%) Query: 1 MTTENELIASMTRLGFTQYEAQAYTALVGQAALTGAEVSRRASMPPSKVYETLARLEARG 60 M ELI S+ RLGFTQYEAQAY ALVGQAALTGAEV RRA MPPSKVYETL RLEARG Sbjct: 1 MNENAELITSLIRLGFTQYEAQAYAALVGQAALTGAEVGRRAGMPPSKVYETLGRLEARG 60 Query: 61 AVLVNRSEPVLYSAVPHTALLAELRSRFNADIESAAAALDRLPVQQEPGLVWSLSGTKAI 120 AVLVNRSEPV Y+AVPH +LL ELR+RFNAD+E AA ALDRLPV+QEPGLVWSLSG +AI Sbjct: 61 AVLVNRSEPVRYAAVPHRSLLEELRTRFNADLELAAGALDRLPVRQEPGLVWSLSGREAI 120 Query: 121 VQAFAHSISSAQKSLFAGIWDEELDELGPLLEAASARGVDTHVAIYGKGTLTGPQTYDMA 180 V AF I A+ +FAG+WDEE+D+LGPLLEAA+ARGVDTHVAIYG TL GP+ YDMA Sbjct: 121 VSAFVRVIDQAKTEIFAGVWDEEIDDLGPLLEAAAARGVDTHVAIYGTRTLNGPRHYDMA 180 Query: 181 ECGASARLRLAGRRLAVLVADDESAVVAEFGDSSPDQATLTTNPVIALLAVEYIKADVSG 240 +CGASARLRL+GRRLAV VADD AVVAEFGD SPDQATLTTNPVIALLAVEYIKADVSG Sbjct: 181 KCGASARLRLSGRRLAVAVADDTEAVVAEFGDQSPDQATLTTNPVIALLAVEYIKADVSG 240 Query: 241 RLMINAMSAASYKKLLATPAMRAMLAPVDPR 271 R++I+AM A Y+K+L P M+AMLAP D R Sbjct: 241 RVLIDAMGPAEYRKVLKHPDMQAMLAPPDKR 271 >ref|YP_366603.1| transcriptional regulator TrmB [Burkholderia sp. 383] gb|ABB05959.1| Transcriptional regulator TrmB [Burkholderia sp. 383] Length = 272 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 205/269 (76%), Positives = 232/269 (86%) Query: 1 MTTENELIASMTRLGFTQYEAQAYTALVGQAALTGAEVSRRASMPPSKVYETLARLEARG 60 M+ ELI S+ RLGFTQYEAQAY ALVGQAALTGAEV RRA MPPSK+YETL RLE RG Sbjct: 1 MSENTELITSLIRLGFTQYEAQAYAALVGQAALTGAEVGRRAGMPPSKIYETLGRLETRG 60 Query: 61 AVLVNRSEPVLYSAVPHTALLAELRSRFNADIESAAAALDRLPVQQEPGLVWSLSGTKAI 120 AVLVNRSEPV Y+AVPH +LL +LR+RFNAD+E AA ALDRLPVQQEPGLVWSLSG +AI Sbjct: 61 AVLVNRSEPVRYAAVPHRSLLEDLRTRFNADLELAAGALDRLPVQQEPGLVWSLSGREAI 120 Query: 121 VQAFAHSISSAQKSLFAGIWDEELDELGPLLEAASARGVDTHVAIYGKGTLTGPQTYDMA 180 AFA I +A+ +FAG+WDEE+D+LGPLLEAA+ARGVDTHVAIYG TL GP+ YDMA Sbjct: 121 ASAFARVIVNAKTQIFAGVWDEEIDDLGPLLEAAAARGVDTHVAIYGTRTLNGPRHYDMA 180 Query: 181 ECGASARLRLAGRRLAVLVADDESAVVAEFGDSSPDQATLTTNPVIALLAVEYIKADVSG 240 +CGASARLRL+GRRLAV VAD+ AVVAEFGD SPD ATLTTNPVIALLAVEYIKADVSG Sbjct: 181 KCGASARLRLSGRRLAVAVADNTEAVVAEFGDHSPDHATLTTNPVIALLAVEYIKADVSG 240 Query: 241 RLMINAMSAASYKKLLATPAMRAMLAPVD 269 R++I+AMS A Y+K+L P M+AMLAP+D Sbjct: 241 RVLIDAMSPAEYRKILKHPDMQAMLAPLD 269 >ref|ZP_04944007.1| hypothetical protein BCPG_05587 [Burkholderia cenocepacia PC184] gb|EAY67178.1| hypothetical protein BCPG_05587 [Burkholderia cenocepacia PC184] Length = 272 Score = 375 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 208/269 (77%), Positives = 230/269 (85%) Query: 1 MTTENELIASMTRLGFTQYEAQAYTALVGQAALTGAEVSRRASMPPSKVYETLARLEARG 60 M ELI S+ RLGFTQYEAQAY ALVGQAALTGAEV RRA MPPSKVYETL RLEARG Sbjct: 1 MNENAELITSLIRLGFTQYEAQAYAALVGQAALTGAEVGRRAGMPPSKVYETLGRLEARG 60 Query: 61 AVLVNRSEPVLYSAVPHTALLAELRSRFNADIESAAAALDRLPVQQEPGLVWSLSGTKAI 120 AVLVNRSEPV Y+AVPH +LL ELR+RFNAD+E AA ALDRLPV+QEPGLVWSLSG +AI Sbjct: 61 AVLVNRSEPVRYAAVPHRSLLEELRTRFNADLELAAGALDRLPVRQEPGLVWSLSGREAI 120 Query: 121 VQAFAHSISSAQKSLFAGIWDEELDELGPLLEAASARGVDTHVAIYGKGTLTGPQTYDMA 180 V AFA I A+ +FAG+WDEE+D+LGPLLEAA+ARGVDTHVAIYG TL GP+ YDMA Sbjct: 121 VSAFARVIDHAKTEIFAGVWDEEIDDLGPLLEAAAARGVDTHVAIYGTRTLDGPRHYDMA 180 Query: 181 ECGASARLRLAGRRLAVLVADDESAVVAEFGDSSPDQATLTTNPVIALLAVEYIKADVSG 240 +CGASARLRL+GRRLAV VADD AVVAEFGD SPD ATLTTNPVIALLAVEYIKADVSG Sbjct: 181 KCGASARLRLSGRRLAVAVADDTEAVVAEFGDQSPDLATLTTNPVIALLAVEYIKADVSG 240 Query: 241 RLMINAMSAASYKKLLATPAMRAMLAPVD 269 R++I+AM A Y+K+L P M+AMLAP D Sbjct: 241 RVLIDAMGPAEYRKVLKHPDMQAMLAPPD 269 >ref|YP_295920.1| transcriptional regulator TrmB [Ralstonia eutropha JMP134] gb|AAZ61076.1| Transcriptional regulator TrmB [Ralstonia eutropha JMP134] Length = 277 Score = 370 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 218/268 (81%), Positives = 245/268 (91%) Query: 1 MTTENELIASMTRLGFTQYEAQAYTALVGQAALTGAEVSRRASMPPSKVYETLARLEARG 60 MT + ELIASMTRLGFTQYEAQAYTALVGQA LTGAEV RRASMP SKVYETLARLE RG Sbjct: 1 MTADAELIASMTRLGFTQYEAQAYTALVGQAPLTGAEVGRRASMPASKVYETLARLETRG 60 Query: 61 AVLVNRSEPVLYSAVPHTALLAELRSRFNADIESAAAALDRLPVQQEPGLVWSLSGTKAI 120 AVLV+RSEPV Y+AVPHTALLAELRSRFNAD+++AA+ALDRLPVQQEPG+VWSLSG ++I Sbjct: 61 AVLVHRSEPVRYAAVPHTALLAELRSRFNADLDAAASALDRLPVQQEPGMVWSLSGRESI 120 Query: 121 VQAFAHSISSAQKSLFAGIWDEELDELGPLLEAASARGVDTHVAIYGKGTLTGPQTYDMA 180 + AFA +IS+A+ SLFAGIWDEELDELGPLL+AASARG+DTHVAIYG L GP TYDMA Sbjct: 121 LLAFARTISNAKASLFAGIWDEELDELGPLLDAASARGIDTHVAIYGHKALKGPHTYDMA 180 Query: 181 ECGASARLRLAGRRLAVLVADDESAVVAEFGDSSPDQATLTTNPVIALLAVEYIKADVSG 240 CGASARLRL+GRRLAV+VAD++ AVVAEFGD + DQAT+TTNPVIALLAVEYIKADVSG Sbjct: 181 ACGASARLRLSGRRLAVVVADEDDAVVAEFGDYTSDQATVTTNPVIALLAVEYIKADVSG 240 Query: 241 RLMINAMSAASYKKLLATPAMRAMLAPV 268 RLMI+AMS+ +YKKLL TP M+AML+PV Sbjct: 241 RLMISAMSSTAYKKLLTTPPMQAMLSPV 268