BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.0470.p         (121 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001119667.1| endoribonuclease L-PSP [Burkholderia vietnam...   203   6e-51
ref|YP_295919.1| endoribonuclease L-PSP [Ralstonia eutropha JMP1...   203   7e-51
ref|YP_003643649.1| Endoribonuclease L-PSP [Thiomonas intermedia...   189   1e-46
ref|YP_366604.1| endoribonuclease L-PSP [Burkholderia sp. 383] >...   183   1e-44
ref|YP_621333.1| endoribonuclease L-PSP [Burkholderia cenocepaci...   179   1e-43

>ref|YP_001119667.1| endoribonuclease L-PSP [Burkholderia vietnamiensis G4]
 gb|ABO54832.1| Endoribonuclease L-PSP [Burkholderia vietnamiensis G4]
          Length = 121

 Score =  203 bits (517), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 103/121 (85%), Positives = 113/121 (93%)

Query: 1   MRQLVSTGSPWESKVGYSRAVIVNDTIFISGTAGQGPDAYTQTKEALATIEKVLTEHGFA 60
           MRQL+STGSPWE KVGYSRAVIVNDTI+ISGTAG+GPD YTQT++ALAT+EKVL ++GF 
Sbjct: 1   MRQLISTGSPWEPKVGYSRAVIVNDTIYISGTAGKGPDVYTQTRDALATVEKVLVDNGFR 60

Query: 61  LSDVAQSRLVVADFEHWQDAARAHGEVYGDIRPAFSLVHALPFVDDAILVEVEAIAVRAA 120
           L DV QSRLVVADFEHW+DAARAHGEVYG+IRPAFSLVHALPFVDDAIL EVEAIAVRA 
Sbjct: 61  LEDVVQSRLVVADFEHWEDAARAHGEVYGEIRPAFSLVHALPFVDDAILAEVEAIAVRAG 120

Query: 121 K 121
           K
Sbjct: 121 K 121


>ref|YP_295919.1| endoribonuclease L-PSP [Ralstonia eutropha JMP134]
 gb|AAZ61075.1| Endoribonuclease L-PSP [Ralstonia eutropha JMP134]
          Length = 121

 Score =  203 bits (516), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 102/121 (84%), Positives = 113/121 (93%)

Query: 1   MRQLVSTGSPWESKVGYSRAVIVNDTIFISGTAGQGPDAYTQTKEALATIEKVLTEHGFA 60
           MRQ +STGSPWE KVGYSRAVIVNDTI+ISGTAGQGPD YTQT++ALAT+EKVLT++GF 
Sbjct: 1   MRQRISTGSPWEPKVGYSRAVIVNDTIYISGTAGQGPDVYTQTRDALATVEKVLTDNGFR 60

Query: 61  LSDVAQSRLVVADFEHWQDAARAHGEVYGDIRPAFSLVHALPFVDDAILVEVEAIAVRAA 120
           +SDV QSRLVV+DFEHW+DAARAHGEVYGDIRPAFSLVHALPFVD+AIL EVEAIAVR  
Sbjct: 61  MSDVVQSRLVVSDFEHWEDAARAHGEVYGDIRPAFSLVHALPFVDEAILAEVEAIAVRVG 120

Query: 121 K 121
           K
Sbjct: 121 K 121


>ref|YP_003643649.1| Endoribonuclease L-PSP [Thiomonas intermedia K12]
 gb|ADG31319.1| Endoribonuclease L-PSP [Thiomonas intermedia K12]
          Length = 121

 Score =  189 bits (480), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 96/121 (79%), Positives = 110/121 (90%)

Query: 1   MRQLVSTGSPWESKVGYSRAVIVNDTIFISGTAGQGPDAYTQTKEALATIEKVLTEHGFA 60
           MR+ VSTGSPWE KVGYSRAV+VNDTI++SGTAGQGPD Y QT++ALA +EKVL ++GFA
Sbjct: 1   MRKTVSTGSPWEPKVGYSRAVVVNDTIYLSGTAGQGPDVYAQTRDALAIVEKVLRDNGFA 60

Query: 61  LSDVAQSRLVVADFEHWQDAARAHGEVYGDIRPAFSLVHALPFVDDAILVEVEAIAVRAA 120
           +SDV QSRLVVADFEHW+DAARAHGEVY  IRPAFSLVHALPFVD +ILVEVEAIAVR +
Sbjct: 61  MSDVVQSRLVVADFEHWEDAARAHGEVYHQIRPAFSLVHALPFVDSSILVEVEAIAVRTS 120

Query: 121 K 121
           +
Sbjct: 121 E 121


>ref|YP_366604.1| endoribonuclease L-PSP [Burkholderia sp. 383]
 gb|ABB05960.1| Endoribonuclease L-PSP [Burkholderia sp. 383]
          Length = 132

 Score =  183 bits (464), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 93/120 (77%), Positives = 109/120 (90%)

Query: 1   MRQLVSTGSPWESKVGYSRAVIVNDTIFISGTAGQGPDAYTQTKEALATIEKVLTEHGFA 60
           MR+ +STGSPWE KVGYSRAV+V++TI+ISGTAG+G D Y QT++ALATI++VL + GFA
Sbjct: 12  MRKRISTGSPWEPKVGYSRAVVVDNTIYISGTAGKGADVYAQTRDALATIDRVLADSGFA 71

Query: 61  LSDVAQSRLVVADFEHWQDAARAHGEVYGDIRPAFSLVHALPFVDDAILVEVEAIAVRAA 120
           LSDV QSRLVVADF++W+ AARAHGE+YGDIRPAFSLVHALPFVD  ILVEVEAIAVRAA
Sbjct: 72  LSDVVQSRLVVADFDNWEAAARAHGEIYGDIRPAFSLVHALPFVDPEILVEVEAIAVRAA 131


>ref|YP_621333.1| endoribonuclease L-PSP [Burkholderia cenocepacia AU 1054]
 ref|YP_839999.1| endoribonuclease L-PSP [Burkholderia cenocepacia HI2424]
 gb|ABF76360.1| Endoribonuclease L-PSP [Burkholderia cenocepacia AU 1054]
 gb|ABK13106.1| Endoribonuclease L-PSP [Burkholderia cenocepacia HI2424]
          Length = 121

 Score =  179 bits (453), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 91/118 (77%), Positives = 106/118 (89%)

Query: 1   MRQLVSTGSPWESKVGYSRAVIVNDTIFISGTAGQGPDAYTQTKEALATIEKVLTEHGFA 60
           MRQ +STGSPWE KVGYSRAV+V++TI++SGTAG+G D Y QT++ALAT+ KVL + GFA
Sbjct: 1   MRQRISTGSPWEPKVGYSRAVVVDNTIYVSGTAGKGDDVYAQTRDALATLGKVLADSGFA 60

Query: 61  LSDVAQSRLVVADFEHWQDAARAHGEVYGDIRPAFSLVHALPFVDDAILVEVEAIAVR 118
           LSDV QSRLVVADF+HW+DAARAHGE+YG+IRPAFSLVHALPFVD  I VEVEAIAVR
Sbjct: 61  LSDVVQSRLVVADFDHWEDAARAHGEIYGEIRPAFSLVHALPFVDPEIRVEVEAIAVR 118