BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0466.p (231 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774032.1| biopolymer transport transmembrane protein [... 416 e-114 ref|YP_001100901.1| biopolymer transport ExbB protein [Herminiim... 330 1e-88 ref|YP_001354583.1| MotA/TolQ/ExbB proton channel family protein... 328 3e-88 gb|EGW61758.1| MotA/TolQ/ExbB proton channel [Dechlorosoma suill... 230 1e-58 ref|YP_932118.1| biopolymer transport protein ExbB [Azoarcus sp.... 222 4e-56 >ref|YP_003774032.1| biopolymer transport transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ62124.1| biopolymer transport transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 231 Score = 416 bits (1070), Expect = e-114, Method: Composition-based stats. Identities = 225/231 (97%), Positives = 231/231 (100%) Query: 1 MEQNVGFAHYWAQGDAVSHSVAYLLLLMSIASWFYILSKAWAAWRIRRGSNALEQFWQAP 60 MEQN+GFAHYWAQGDAVSHSVAYLLL+MSIASW+YILSKAWAAWRIRRGSNALE+FWQAP Sbjct: 1 MEQNIGFAHYWAQGDAVSHSVAYLLLIMSIASWYYILSKAWAAWRIRRGSNALERFWQAP 60 Query: 61 TLADATAAMQRLDSEQIYTPMAERAAEAADIGTRQQGTPSLNAATDPGELITRTLRREIN 120 TLADATAAMQRLDSEQIYTPMAERAAEAADIGTRQQGTPSLNAATDPGELITRTLRREIN Sbjct: 61 TLADATAAMQRLDSEQIYTPMAERAAEAADIGTRQQGTPSLNAATDPGELITRTLRREIN 120 Query: 121 RVSARLERGLTLLASVGSTAPFVGLFGTVWGIYHALVAVSASGTVQIDKVAGPVGEALIM 180 RVSARLERGLTLLASVGSTAPFVGLFGTVWGIYHALVAVSASGTVQIDKVAGPVGEALIM Sbjct: 121 RVSARLERGLTLLASVGSTAPFVGLFGTVWGIYHALVAVSASGTVQIDKVAGPVGEALIM 180 Query: 181 TALGLLVAIPAVLAYNAFTRINRVVLAELDGFAHDLHAYLTTGERVGGMRK 231 TALGLLVAIPAVLAYNAFTRINRVVLAELDGFAHDLHAYLTTGERVGG+R+ Sbjct: 181 TALGLLVAIPAVLAYNAFTRINRVVLAELDGFAHDLHAYLTTGERVGGVRR 231 >ref|YP_001100901.1| biopolymer transport ExbB protein [Herminiimonas arsenicoxydans] emb|CAL62780.1| Putative biopolymer transport ExbB protein [Herminiimonas arsenicoxydans] Length = 230 Score = 330 bits (845), Expect = 1e-88, Method: Composition-based stats. Identities = 178/226 (78%), Positives = 197/226 (87%), Gaps = 3/226 (1%) Query: 2 EQNVGFAHYWAQGDAVSHSVAYLLLLMSIASWFYILSKAWAAWRIRRGSNALEQFWQAPT 61 EQ +G +HYWAQGDAVSH+VAY LL+MSI SW+YILSK W+AWRIRR + ALE FWQAPT Sbjct: 7 EQGLGLSHYWAQGDAVSHAVAYALLIMSILSWYYILSKGWSAWRIRRSAAALENFWQAPT 66 Query: 62 LADATAAMQRLDSEQIYTPMAERAAEAADIGTRQQGTPSLNAATDPGELITRTLRREINR 121 L DA AA++ DSE +YTP+A ++ EAA+I SLNA TDPGELITRTLR+EINR Sbjct: 67 LPDAIAAIRLTDSENVYTPLAAQSVEAANITPHAN---SLNANTDPGELITRTLRQEINR 123 Query: 122 VSARLERGLTLLASVGSTAPFVGLFGTVWGIYHALVAVSASGTVQIDKVAGPVGEALIMT 181 VS+RLE GLTLLASVGSTAPF+GLFGTVWGIYHALVAVSASGTVQIDKVAGPVGEALIMT Sbjct: 124 VSSRLENGLTLLASVGSTAPFIGLFGTVWGIYHALVAVSASGTVQIDKVAGPVGEALIMT 183 Query: 182 ALGLLVAIPAVLAYNAFTRINRVVLAELDGFAHDLHAYLTTGERVG 227 ALGL VAIPAVLAYNAFTR+NR+ LAELD FAHDLHAYLTTG RVG Sbjct: 184 ALGLAVAIPAVLAYNAFTRVNRITLAELDAFAHDLHAYLTTGTRVG 229 >ref|YP_001354583.1| MotA/TolQ/ExbB proton channel family protein [Janthinobacterium sp. Marseille] gb|ABR90144.1| MotA/TolQ/ExbB proton channel family protein [Janthinobacterium sp. Marseille] Length = 230 Score = 328 bits (842), Expect = 3e-88, Method: Composition-based stats. Identities = 176/226 (77%), Positives = 199/226 (88%), Gaps = 3/226 (1%) Query: 2 EQNVGFAHYWAQGDAVSHSVAYLLLLMSIASWFYILSKAWAAWRIRRGSNALEQFWQAPT 61 +Q +G AHYWAQGDAVSHSVAY+LL+MSI SW+YILSKAW++WRIR+ + AL+ FWQAPT Sbjct: 7 DQGLGLAHYWAQGDAVSHSVAYVLLIMSILSWYYILSKAWSSWRIRKSAAALDGFWQAPT 66 Query: 62 LADATAAMQRLDSEQIYTPMAERAAEAADIGTRQQGTPSLNAATDPGELITRTLRREINR 121 L DA A ++R DSE +YTP+A ++ EAA+I SLNA TDPGELITRTLR+EINR Sbjct: 67 LTDAIATIRRSDSENVYTPLAAQSVEAANIKPHAN---SLNANTDPGELITRTLRQEINR 123 Query: 122 VSARLERGLTLLASVGSTAPFVGLFGTVWGIYHALVAVSASGTVQIDKVAGPVGEALIMT 181 VS+RLE GLTLLASVGSTAPF+GLFGTVWGIYHALVAVS+SGT+QIDKVAGPVGEALIMT Sbjct: 124 VSSRLETGLTLLASVGSTAPFIGLFGTVWGIYHALVAVSSSGTIQIDKVAGPVGEALIMT 183 Query: 182 ALGLLVAIPAVLAYNAFTRINRVVLAELDGFAHDLHAYLTTGERVG 227 ALGL VAIPAVLAYNAFTR+NRV LAELD FAHDLHAYLTTG RVG Sbjct: 184 ALGLAVAIPAVLAYNAFTRVNRVTLAELDAFAHDLHAYLTTGARVG 229 >gb|EGW61758.1| MotA/TolQ/ExbB proton channel [Dechlorosoma suillum PS] Length = 239 Score = 230 bits (587), Expect = 1e-58, Method: Composition-based stats. Identities = 134/227 (59%), Positives = 161/227 (70%), Gaps = 2/227 (0%) Query: 1 MEQNVGFAHYWAQGDAVSHSVAYLLLLMSIASWFYILSKAWAAWRIRRG-SNALEQFWQA 59 M +G +H+WAQGD VSHSVA +LLL+S+ASW I+ K A WR R S AL FWQA Sbjct: 1 MNTQLGLSHFWAQGDGVSHSVALILLLLSVASWCVIVGKFIAHWRASRTQSRALAAFWQA 60 Query: 60 PTLADATAAMQRLDSEQIYTPMAERAAEAADIGTRQQGTPSLNAATDPGELITRTLRREI 119 +L +A A++R D+ I +A + A Q + A + E +TR LR+ I Sbjct: 61 DSLPEALEAIRREDASGILAGLA-LSGAHAAQAHEQHAARGIGAGVNASEFVTRCLRQSI 119 Query: 120 NRVSARLERGLTLLASVGSTAPFVGLFGTVWGIYHALVAVSASGTVQIDKVAGPVGEALI 179 AR+E+GLT LASVGSTAPF+GLFGTVWGIYHALV +S S V +DKVAGPVGEALI Sbjct: 120 VTTQARIEQGLTFLASVGSTAPFIGLFGTVWGIYHALVGLSGSSQVVLDKVAGPVGEALI 179 Query: 180 MTALGLLVAIPAVLAYNAFTRINRVVLAELDGFAHDLHAYLTTGERV 226 MTA GL VAIPAVLAYNAFTR NR+VLA++DGFAHDLHAYLTTG R+ Sbjct: 180 MTAAGLFVAIPAVLAYNAFTRANRLVLAQMDGFAHDLHAYLTTGVRL 226 >ref|YP_932118.1| biopolymer transport protein ExbB [Azoarcus sp. BH72] emb|CAL93231.1| probable biopolymer transport protein ExbB [Azoarcus sp. BH72] Length = 253 Score = 222 bits (565), Expect = 4e-56, Method: Composition-based stats. Identities = 128/225 (56%), Positives = 154/225 (68%) Query: 3 QNVGFAHYWAQGDAVSHSVAYLLLLMSIASWFYILSKAWAAWRIRRGSNALEQFWQAPTL 62 Q GFAH W Q DA+ +VA LLL MS+ SW+ IL +A R RR +A++ FW A L Sbjct: 5 QAFGFAHLWGQSDAIIRTVAILLLAMSVTSWYLILVRALRQLRARRSIDAVDAFWAASDL 64 Query: 63 ADATAAMQRLDSEQIYTPMAERAAEAADIGTRQQGTPSLNAATDPGELITRTLRREINRV 122 + +Q + + +A + A AAD R +L D E ITR LR+ I+ Sbjct: 65 SQGLKRLQDQAPDSPFDDLARQGAAAADHVRRHTHQETLGGKLDADEFITRALRKSISLS 124 Query: 123 SARLERGLTLLASVGSTAPFVGLFGTVWGIYHALVAVSASGTVQIDKVAGPVGEALIMTA 182 +ARLE GLT+LAS+GSTAPFVGLFGTVWGIYHALV +SASG +DKVAGPVGEALIMTA Sbjct: 125 TARLEAGLTMLASIGSTAPFVGLFGTVWGIYHALVNISASGMATLDKVAGPVGEALIMTA 184 Query: 183 LGLLVAIPAVLAYNAFTRINRVVLAELDGFAHDLHAYLTTGERVG 227 GL VAIPAVLAYNAFTR NRV L+ELD FAHDLHA+ +TG R+ Sbjct: 185 FGLFVAIPAVLAYNAFTRANRVELSELDAFAHDLHAWFSTGARIA 229