BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.0465.p         (147 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774031.1| biopolymer transport ExbD/TolR protein [Herb...   234   4e-60
ref|YP_001354584.1| biopolymer transport protein ExbD [Janthinob...   186   9e-46
ref|YP_001858807.1| biopolymer transport protein ExbD/TolR [Burk...   172   2e-41
ref|ZP_03266384.1| Biopolymer transport protein ExbD/TolR [Burkh...   168   3e-40
ref|YP_001896996.1| biopolymertransporter ExbD/TolR [Burkholderi...   167   5e-40

>ref|YP_003774031.1| biopolymer transport ExbD/TolR protein [Herbaspirillum seropedicae
           SmR1]
 gb|ADJ62123.1| biopolymer transport ExbD/TolR protein [Herbaspirillum seropedicae
           SmR1]
          Length = 148

 Score =  234 bits (596), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 126/137 (91%), Positives = 131/137 (95%)

Query: 1   MSFGGFNDNQNSAPMADINVTPMVDVMLVLLVIFIITAPMFTHALKLDLPTAQSNPAPEK 60
           MSFGGFNDNQNSAPMADINVTPMVDVMLVLLVIFIITAPMFTHALKLDLPTAQS PAPEK
Sbjct: 1   MSFGGFNDNQNSAPMADINVTPMVDVMLVLLVIFIITAPMFTHALKLDLPTAQSAPAPEK 60

Query: 61  PETITLGIDAAGKLYWNDQPVSEEDMDARLATAAAKKPQPELQLRADKSTRYEMIAEVMS 120
           PETITLGIDAAGKLYWNDQPVS E++DARL  AA K+PQPELQLRADKSTRY+ IAEVMS
Sbjct: 61  PETITLGIDAAGKLYWNDQPVSSEELDARLTAAAGKQPQPELQLRADKSTRYQTIAEVMS 120

Query: 121 AAQGAGLTKLGFVTDPK 137
           AAQGAGL+KLGFVTDPK
Sbjct: 121 AAQGAGLSKLGFVTDPK 137


>ref|YP_001354584.1| biopolymer transport protein ExbD [Janthinobacterium sp. Marseille]
 gb|ABR90158.1| biopolymer transport protein ExbD [Janthinobacterium sp. Marseille]
          Length = 142

 Score =  186 bits (472), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 94/135 (69%), Positives = 119/135 (88%)

Query: 1   MSFGGFNDNQNSAPMADINVTPMVDVMLVLLVIFIITAPMFTHALKLDLPTAQSNPAPEK 60
           M+FGGFND Q + PMADINVTPMVDVMLVLLVIFIITAP+FTHA+KLDLP+AQS PAP +
Sbjct: 1   MAFGGFNDKQQAGPMADINVTPMVDVMLVLLVIFIITAPLFTHAIKLDLPSAQSAPAPTE 60

Query: 61  PETITLGIDAAGKLYWNDQPVSEEDMDARLATAAAKKPQPELQLRADKSTRYEMIAEVMS 120
           P TI+L I+ AG ++WN+  V+ +D++ RLATAA ++PQP++QLRADK TRYE+IA+VM+
Sbjct: 61  PTTISLSINGAGAVFWNNDAVTLDDLNTRLATAAKQQPQPQVQLRADKGTRYEVIAQVMA 120

Query: 121 AAQGAGLTKLGFVTD 135
           +AQG G+TKLGFVT+
Sbjct: 121 SAQGNGITKLGFVTE 135


>ref|YP_001858807.1| biopolymer transport protein ExbD/TolR [Burkholderia phymatum
           STM815]
 gb|ACC71761.1| Biopolymer transport protein ExbD/TolR [Burkholderia phymatum
           STM815]
          Length = 158

 Score =  172 bits (436), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 84/135 (62%), Positives = 110/135 (81%)

Query: 1   MSFGGFNDNQNSAPMADINVTPMVDVMLVLLVIFIITAPMFTHALKLDLPTAQSNPAPEK 60
           M+FGG + ++ +APMADIN+TP++DVMLVLLVIFIITAP+FTHA++LDLP   +  + E 
Sbjct: 1   MAFGGLDRHKTAAPMADINMTPLIDVMLVLLVIFIITAPLFTHAIRLDLPRVAAAESRET 60

Query: 61  PETITLGIDAAGKLYWNDQPVSEEDMDARLATAAAKKPQPELQLRADKSTRYEMIAEVMS 120
           P+TITL IDAAGKLYWN +PV+ E M A+   A  +K QPE+ LRA++STRYE+IA+VM 
Sbjct: 61  PQTITLSIDAAGKLYWNGKPVTLEQMRAQFNDAGKQKEQPEIHLRAERSTRYEVIAQVMG 120

Query: 121 AAQGAGLTKLGFVTD 135
           AAQ AGL ++GFVT+
Sbjct: 121 AAQQAGLERIGFVTE 135


>ref|ZP_03266384.1| Biopolymer transport protein ExbD/TolR [Burkholderia sp. H160]
 gb|EEA02093.1| Biopolymer transport protein ExbD/TolR [Burkholderia sp. H160]
          Length = 143

 Score =  168 bits (425), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 84/136 (61%), Positives = 111/136 (81%)

Query: 1   MSFGGFNDNQNSAPMADINVTPMVDVMLVLLVIFIITAPMFTHALKLDLPTAQSNPAPEK 60
           M+FGG    Q +APMA+IN+TP++DVMLVLLVIFIITAP+F+HA++LDLP   + PA + 
Sbjct: 1   MAFGGLEKKQTAAPMAEINMTPLIDVMLVLLVIFIITAPLFSHAIRLDLPKVAAAPARQT 60

Query: 61  PETITLGIDAAGKLYWNDQPVSEEDMDARLATAAAKKPQPELQLRADKSTRYEMIAEVMS 120
           P+TI+L IDAAGKLYWND+P++   M A+ A A  +  QP++QLRA++STRYE+IA+VM 
Sbjct: 61  PQTISLSIDAAGKLYWNDKPITLAQMRAQFAEAGKQADQPDIQLRAERSTRYEVIAQVMG 120

Query: 121 AAQGAGLTKLGFVTDP 136
           AAQ AGL ++GFVTDP
Sbjct: 121 AAQQAGLERIGFVTDP 136


>ref|YP_001896996.1| biopolymertransporter ExbD/TolR [Burkholderia phytofirmans PsJN]
 gb|ACD17772.1| Biopolymer transport protein ExbD/TolR [Burkholderia phytofirmans
           PsJN]
          Length = 143

 Score =  167 bits (423), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 85/136 (62%), Positives = 109/136 (80%)

Query: 1   MSFGGFNDNQNSAPMADINVTPMVDVMLVLLVIFIITAPMFTHALKLDLPTAQSNPAPEK 60
           M+FGG    Q +APMA+IN+TP++DVMLVLLVIFIITAP+FTHA++LDLP   + PA + 
Sbjct: 1   MAFGGLEKKQTAAPMAEINMTPLIDVMLVLLVIFIITAPLFTHAIRLDLPKVAAAPARQT 60

Query: 61  PETITLGIDAAGKLYWNDQPVSEEDMDARLATAAAKKPQPELQLRADKSTRYEMIAEVMS 120
           P+TI+L IDAAGKLYW+   ++ E M AR A A  +  QPE+QLRA++STRYE+IA+VM 
Sbjct: 61  PQTISLSIDAAGKLYWDGSVITLEQMRARFAQAGKESDQPEIQLRAERSTRYEVIAQVMG 120

Query: 121 AAQGAGLTKLGFVTDP 136
           AAQ AGL ++GFVTDP
Sbjct: 121 AAQQAGLERIGFVTDP 136