BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0462.p (267 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774027.1| spermidine/putrescine ABC transporter permea... 432 e-119 ref|YP_004754418.1| ABC transporter permease [Collimonas fungivo... 386 e-105 ref|YP_003450858.1| ABC transporter permease protein [Azospirill... 296 3e-78 ref|YP_003521113.1| CysW [Pantoea ananatis LMG 20103] >gi|291153... 291 5e-77 ref|YP_003742723.1| ABC transporter permease [Erwinia billingiae... 290 2e-76 >ref|YP_003774027.1| spermidine/putrescine ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ62119.1| ABC-type spermidine/putrescine transport system, permease component II protein [Herbaspirillum seropedicae SmR1] Length = 267 Score = 432 bits (1110), Expect = e-119, Method: Composition-based stats. Identities = 261/267 (97%), Positives = 263/267 (98%) Query: 1 MQNRFRFYLQLGFTLLVCAFLVVPVVLSMLAGVTENFFVGLSSGLTLRWVAQVWEMYQPT 60 MQNRFRFYLQLGFTLLVCAFLVVPVVLSMLAGVTENFFVGLSSGLTLRWVAQVWEMYQPT Sbjct: 1 MQNRFRFYLQLGFTLLVCAFLVVPVVLSMLAGVTENFFVGLSSGLTLRWVAQVWEMYQPT 60 Query: 61 IWRSLIIALACLAVTLVAGVPLAYMLARYRGGHSRLARVIEELLMMPVAVPGLATALALI 120 IWRSL IALACLAVTL AGVPLAYMLARYRGG+SRLARVIEELLMMPVAVPGLATALALI Sbjct: 61 IWRSLFIALACLAVTLAAGVPLAYMLARYRGGNSRLARVIEELLMMPVAVPGLATALALI 120 Query: 121 MAYGQLREFRASILFILVGHVIFTLPFMVRPVLAVMQSSQLAQLEEAAASLGAGRMRRFF 180 MAYGQ REFRAS+ FILVGHVIFTLPFMVRPVLAVMQSSQLAQLEEAAASLGAGRMRRFF Sbjct: 121 MAYGQYREFRASLWFILVGHVIFTLPFMVRPVLAVMQSSQLAQLEEAAASLGAGRMRRFF 180 Query: 181 GIVIPNAASGILAGALMVVTLSIGEFNITWMLHTPLTQTLPVGLADAYASMRLEVGSAYT 240 GIVIPNAASGILAGALMVVTLSIGEFNITWMLHTPLTQTLPVGLADAYASMRLEVGSAYT Sbjct: 181 GIVIPNAASGILAGALMVVTLSIGEFNITWMLHTPLTQTLPVGLADAYASMRLEVGSAYT 240 Query: 241 LIFFFMIIPLLIGMQWATQATRKKVSL 267 LIFFFMIIPLLIGMQWATQATRKKVSL Sbjct: 241 LIFFFMIIPLLIGMQWATQATRKKVSL 267 >ref|YP_004754418.1| ABC transporter permease [Collimonas fungivorans Ter331] gb|AEK63595.1| ABC transporter, permease protein [Collimonas fungivorans Ter331] Length = 277 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 228/267 (85%), Positives = 243/267 (91%) Query: 1 MQNRFRFYLQLGFTLLVCAFLVVPVVLSMLAGVTENFFVGLSSGLTLRWVAQVWEMYQPT 60 M++ FRFYLQL FTLLVCAFL+VP+VLSMLAGVTENFFVG SSG TLRWV QVW+ YQ T Sbjct: 11 MKHSFRFYLQLAFTLLVCAFLIVPIVLSMLAGVTENFFVGWSSGFTLRWVMQVWDTYQQT 70 Query: 61 IWRSLIIALACLAVTLVAGVPLAYMLARYRGGHSRLARVIEELLMMPVAVPGLATALALI 120 IWRS+ IALACLAVT AGVPLAYMLAR+RGG+SRLARVIEELLMMPVAVPGLATALALI Sbjct: 71 IWRSIAIALACLAVTTAAGVPLAYMLARHRGGNSRLARVIEELLMMPVAVPGLATALALI 130 Query: 121 MAYGQLREFRASILFILVGHVIFTLPFMVRPVLAVMQSSQLAQLEEAAASLGAGRMRRFF 180 MAYGQ REFR S+LFIL+GHV+FTLPFMVRPVLAVMQSSQL+ LEEAAASLGAG +RFF Sbjct: 131 MAYGQYREFRGSLLFILIGHVLFTLPFMVRPVLAVMQSSQLSVLEEAAASLGAGLGQRFF 190 Query: 181 GIVIPNAASGILAGALMVVTLSIGEFNITWMLHTPLTQTLPVGLADAYASMRLEVGSAYT 240 GIVIPN SGILAGALMVVTLSIGEFNITWMLHTPLT TLPVGLAD+YASMRLEVGSAYT Sbjct: 191 GIVIPNVFSGILAGALMVVTLSIGEFNITWMLHTPLTMTLPVGLADSYASMRLEVGSAYT 250 Query: 241 LIFFFMIIPLLIGMQWATQATRKKVSL 267 LIFF MIIPLLI MQW T ATR +V L Sbjct: 251 LIFFLMIIPLLIAMQWVTHATRSRVRL 277 >ref|YP_003450858.1| ABC transporter permease protein [Azospirillum sp. B510] dbj|BAI74314.1| ABC transporter permease protein [Azospirillum sp. B510] Length = 272 Score = 296 bits (757), Expect = 3e-78, Method: Composition-based stats. Identities = 175/259 (67%), Positives = 208/259 (80%), Gaps = 3/259 (1%) Query: 7 FYLQLGFTLLVCAFLVVPVVLSMLAGVTENFFVGLSSGLTLRWVAQVWEMYQPTIWRSLI 66 F+LQLGFTLLVCA L VP+V+SMLAG+T N+F+GL SGLTLRWV +VW +Y TI SL Sbjct: 17 FWLQLGFTLLVCALLTVPMVMSMLAGLTANYFIGLKSGLTLRWVEEVWRVYSGTILLSLQ 76 Query: 67 IALACLAVTLVAGVPLAYMLARYRGGHSRLARVIEELLMMPVAVPGLATALALIMAYGQL 126 IA ACLA TL GVP AY+L R G R+AR++EELLMMPVA+PGLATALALI+ YG + Sbjct: 77 IAFACLACTLALGVPAAYVLTRRPG---RIARLVEELLMMPVAIPGLATALALIVTYGGV 133 Query: 127 REFRASILFILVGHVIFTLPFMVRPVLAVMQSSQLAQLEEAAASLGAGRMRRFFGIVIPN 186 + R S LFIL+GHV+FTLPFMVR VLAVM S L LEE AASLGAG RRF +V+PN Sbjct: 134 GDLRGSWLFILIGHVLFTLPFMVRAVLAVMGSIDLTTLEEGAASLGAGFARRFATVVLPN 193 Query: 187 AASGILAGALMVVTLSIGEFNITWMLHTPLTQTLPVGLADAYASMRLEVGSAYTLIFFFM 246 SGILAG+LMV+TLS+GEFN+TW+LHTPLT+TLPVGLAD+YAS+R+E+GSAYTL+FF M Sbjct: 194 CRSGILAGSLMVLTLSVGEFNLTWLLHTPLTKTLPVGLADSYASLRIEIGSAYTLVFFLM 253 Query: 247 IIPLLIGMQWATQATRKKV 265 I+P LI MQ + R V Sbjct: 254 IVPSLILMQGLARRGRPSV 272 >ref|YP_003521113.1| CysW [Pantoea ananatis LMG 20103] gb|ADD77985.1| CysW [Pantoea ananatis LMG 20103] dbj|BAK12185.1| sulfate transport system permease protein CysW [Pantoea ananatis AJ13355] Length = 271 Score = 291 bits (746), Expect = 5e-77, Method: Composition-based stats. Identities = 163/240 (67%), Positives = 194/240 (80%), Gaps = 3/240 (1%) Query: 1 MQNRFRFYLQLGFTLLVCAFLVVPVVLSMLAGVTENFFVGLSSGLTLRWVAQVWEMYQPT 60 M+ R FYLQ+ T L F++VPV+LSMLAGVT+N+FVGL SGLTL+WVAQVWEMY T Sbjct: 1 MKRRGLFYLQVAITTLTALFMIVPVILSMLAGVTQNYFVGLRSGLTLKWVAQVWEMYSDT 60 Query: 61 IWRSLIIALACLAVTLVAGVPLAYMLARYRGGHSRLARVIEELLMMPVAVPGLATALALI 120 W SL+IA++CL V + GVP A+ L + SR A IEE LM+PVA+PGLATAL +I Sbjct: 61 FWLSLLIAVSCLIVNVAIGVPAAWGLLK---SPSRWASRIEECLMLPVALPGLATALGII 117 Query: 121 MAYGQLREFRASILFILVGHVIFTLPFMVRPVLAVMQSSQLAQLEEAAASLGAGRMRRFF 180 + YGQ R S +FIL+GHV+FTLPFM+RPVLAVMQ+ QL +LEEAAASLGAG RRFF Sbjct: 118 LLYGQFSSLRDSWVFILIGHVLFTLPFMIRPVLAVMQAIQLPRLEEAAASLGAGFWRRFF 177 Query: 181 GIVIPNAASGILAGALMVVTLSIGEFNITWMLHTPLTQTLPVGLADAYASMRLEVGSAYT 240 +V+PN +GILAGA MV+TLS+GEFNITWMLHTPLT+TLPVGLAD+YASMRLEVGSAYT Sbjct: 178 TVVVPNCRNGILAGAFMVITLSVGEFNITWMLHTPLTKTLPVGLADSYASMRLEVGSAYT 237 >ref|YP_003742723.1| ABC transporter permease [Erwinia billingiae Eb661] emb|CAX60876.1| ABC-type transporter, permease component [Erwinia billingiae Eb661] Length = 273 Score = 290 bits (742), Expect = 2e-76, Method: Composition-based stats. Identities = 176/258 (68%), Positives = 213/258 (82%), Gaps = 3/258 (1%) Query: 7 FYLQLGFTLLVCAFLVVPVVLSMLAGVTENFFVGLSSGLTLRWVAQVWEMYQPTIWRSLI 66 F+LQL FTL +C F+VVP+VLS+LAGVTEN+F+GL SGLTLRWVAQVWE+Y TIW SL+ Sbjct: 7 FWLQLIFTLSLCLFMVVPIVLSLLAGVTENYFIGLKSGLTLRWVAQVWELYAGTIWLSLL 66 Query: 67 IALACLAVTLVAGVPLAYMLARYRGGHSRLARVIEELLMMPVAVPGLATALALIMAYGQL 126 IA++CL LV GVP A+ L + SR A IEE L++PVA+PGLATAL LI+ YG Sbjct: 67 IAVSCLGCVLVLGVPAAWGLLKTP---SRWASRIEEFLLLPVALPGLATALGLIVIYGGF 123 Query: 127 REFRASILFILVGHVIFTLPFMVRPVLAVMQSSQLAQLEEAAASLGAGRMRRFFGIVIPN 186 R+S LFIL+GHV+FTLPFMVRPVL+VM++SQL QLEEAAASLGAG RRFF +++PN Sbjct: 124 HGLRSSWLFILIGHVLFTLPFMVRPVLSVMRASQLLQLEEAAASLGAGFWRRFFTVIVPN 183 Query: 187 AASGILAGALMVVTLSIGEFNITWMLHTPLTQTLPVGLADAYASMRLEVGSAYTLIFFFM 246 +GILAGA MV+TLSIGEFNITWMLHTPLT+TLPVGLAD+YASMRLEVGSAYTLIF + Sbjct: 184 CRNGILAGAFMVLTLSIGEFNITWMLHTPLTKTLPVGLADSYASMRLEVGSAYTLIFLAI 243 Query: 247 IIPLLIGMQWATQATRKK 264 I+PLL+ + W TQ +++ Sbjct: 244 ILPLLLALSWVTQFAQRR 261