BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0458.p (270 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774024.1| transcription regulator protein [Herbaspiril... 370 e-100 ref|YP_004754421.1| LacI family transcriptional regulator [Colli... 281 9e-74 ref|YP_586970.1| LacI family transcriptional regulator [Cupriavi... 191 1e-46 ref|YP_841114.1| LacI family transcription regulator [Ralstonia ... 188 9e-46 ref|YP_003745699.1| laci family transcriptional regulator [Ralst... 170 2e-40 >ref|YP_003774024.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ62116.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 358 Score = 370 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 211/263 (80%), Positives = 228/263 (86%), Gaps = 6/263 (2%) Query: 1 MFTTTEYLPEDESAAVELLLGHRVDGVILTVADAGANATLDLLERERIPFVLAYNQLADA 60 MFTTTEYLPE+E+AAVELLLGHRVDG+ILTVADA ANATLDLLERERIPFVLAYNQL Sbjct: 94 MFTTTEYLPEEETAAVELLLGHRVDGMILTVADASANATLDLLERERIPFVLAYNQLG-- 151 Query: 61 AADADAEAATHRASVSVDNRAAACDAVSHLIGLGHRRIQMLSGRFNASDRAMQRYCGYLD 120 D AA RASVSVDNRAAACDAV+HLIGLGHRRIQMLSGRFNASDRAMQRY GYLD Sbjct: 152 ---TDQTAAPARASVSVDNRAAACDAVAHLIGLGHRRIQMLSGRFNASDRAMQRYYGYLD 208 Query: 121 AMQAAGLAPLPAIEVERHTLTAATDYQQMMADPLHRPTALFCSNDLLALSAMRDLRALGL 180 AM+AAGLAP+ IEVERHTLTAA DYQQMMADP RPTALFCSNDLLA+SAMRDLRALG+ Sbjct: 209 AMRAAGLAPMAVIEVERHTLTAAADYQQMMADPRQRPTALFCSNDLLAMSAMRDLRALGM 268 Query: 181 QVPEDISVMGFDGIPVGALMQPVLASVVQPSEQIGEVALRTLVDAIERAVPAVADVEGAA 240 +VP DISVMGFDGIPVGALM+PVLASVVQPSEQIGEVALR LV+AIER + A Sbjct: 269 KVPNDISVMGFDGIPVGALMEPVLASVVQPSEQIGEVALRVLVEAIERNA-SAAAAAAPD 327 Query: 241 PVVAAAEVRHILPHVLRQGGSVA 263 ++A+ +RHILPH +R GGSVA Sbjct: 328 LALSASWLRHILPHAVRSGGSVA 350 >ref|YP_004754421.1| LacI family transcriptional regulator [Collimonas fungivorans Ter331] gb|AEK63598.1| transcriptional regulator, LacI family [Collimonas fungivorans Ter331] Length = 340 Score = 281 bits (718), Expect = 9e-74, Method: Composition-based stats. Identities = 164/268 (61%), Positives = 195/268 (72%), Gaps = 22/268 (8%) Query: 1 MFTTTEYLPEDESAAVELLLGHRVDGVILTVADAGANATLDLLERERIPFVLAYNQLADA 60 MFT TEY +DESAAVELLL HRVDG+ILTV +A A++TLD+L+RERIP+VL YNQ Sbjct: 94 MFTATEYRQQDESAAVELLLAHRVDGIILTVTNADASSTLDVLDRERIPYVLVYNQ---- 149 Query: 61 AADADAEAATHRASVSVDNRAAACDAVSHLIGLGHRRIQMLSGRFNASDRAMQRYCGYLD 120 T R SVSVDNRAAA +AVSHLI LGH RIQMLSG+F+ASDRA+QRY GY Sbjct: 150 ------PQQTARPSVSVDNRAAAHEAVSHLINLGHIRIQMLSGQFHASDRALQRYHGYRQ 203 Query: 121 AMQAAGLAPLPAIEVERHTLTA-ATDYQQMMADPLHRPTALFCSNDLLALSAMRDLRALG 179 AM GL L IE+ RHT A ++++ Q+ DPL RP+ALFCSNDLLALS MRDLRA+G Sbjct: 204 AMHEHGLQVLTPIEIPRHTYAALSSEHLQIFRDPLRRPSALFCSNDLLALSVMRDLRAIG 263 Query: 180 LQVPEDISVMGFDGIPVGALMQPVLASVVQPSEQIGEVALRTLVDAIERAVPAVADVEGA 239 L+VP+D+SVMGFDGIP+G LM P+L+SV QPSEQIG++ALRTLV AIE D +G Sbjct: 264 LRVPDDVSVMGFDGIPLGELMDPMLSSVAQPSEQIGKLALRTLVRAIEEP----QDGQGP 319 Query: 240 APVVAAAEVRHILPHVLRQGGSVAAVSS 267 A +LPH +R GGSV S Sbjct: 320 AST-------QLLPHTVRLGGSVRTFHS 340 >ref|YP_586970.1| LacI family transcriptional regulator [Cupriavidus metallidurans CH34] gb|ABF11701.1| putative transcriptional regulator, LacI family [Cupriavidus metallidurans CH34] Length = 358 Score = 191 bits (484), Expect = 1e-46, Method: Composition-based stats. Identities = 119/264 (45%), Positives = 166/264 (62%), Gaps = 20/264 (7%) Query: 1 MFTTTEYLPEDESAAVELLLGHRVDGVILTVADAGANATLDLLERERIPFVLAYNQLADA 60 M T+ Y E E +E LL HRVDG++LTVADA + LD L++E +P+VLAYNQ++ Sbjct: 113 MLVTSGYDTERERERIEYLLRHRVDGMVLTVADAAQSLVLDQLDKESVPYVLAYNQVSLP 172 Query: 61 AADADAEAATHRASVSVDNRAAACDAVSHLIGLGHRRIQMLSGRFNASDRAMQRYCGYLD 120 R SVSVDNRA+AC+ V LI GH+RI ++SG F ASDRA QR+ GY D Sbjct: 173 G----------RHSVSVDNRASACEGVKALITAGHQRIAVISGAFMASDRARQRFAGYED 222 Query: 121 AMQAAGLAPLPAIEVERHTLTAATDYQQMMADPLHRPTALFCSNDLLALSAMRDLRALGL 180 AM+A L PL + + HT + A +++M PTA FC+NDLLA+ + DL+ LG Sbjct: 223 AMRAHDLTPLAPVCLPSHTASNAMQIRELMTRA-DAPTAFFCTNDLLAIGVISDLKRLGR 281 Query: 181 QVPEDISVMGFDGIPVGALMQPVLASVVQPSEQIGEVALRTLVDAIERAVPAVADVEGAA 240 +VP D+SV+G+DGI +GAL++P LA+V+QP+ +IG A+ L+ ++ D Sbjct: 282 RVPGDVSVLGYDGIALGALVEPPLATVMQPNAEIGAQAVHQLLQRLQHRNLNHDD----- 336 Query: 241 PVVAAAEVRHILPHVLRQGGSVAA 264 AAE +LPH+LR G+V+A Sbjct: 337 ----AAEGAFLLPHMLRLDGTVSA 356 >ref|YP_841114.1| LacI family transcription regulator [Ralstonia eutropha H16] emb|CAJ96384.1| transcriptional regulator, LacI-family [Ralstonia eutropha H16] Length = 365 Score = 188 bits (477), Expect = 9e-46, Method: Composition-based stats. Identities = 125/267 (46%), Positives = 162/267 (60%), Gaps = 20/267 (7%) Query: 1 MFTTTEYLPEDESAAVELLLGHRVDGVILTVADAGANATLDLLERERIPFVLAYNQLADA 60 M T+ Y P E VE LL HRVDG++LTVADA + LD L+ E +P+VLAYNQ Sbjct: 118 MLVTSGYDPARECERVEYLLRHRVDGMVLTVADAAHSTVLDQLDGEGVPYVLAYNQ---- 173 Query: 61 AADADAEAATHRASVSVDNRAAACDAVSHLIGLGHRRIQMLSGRFNASDRAMQRYCGYLD 120 A + R SVSVDNR +AC V LI GHRRI ++SG F ASDRA QR+ GY D Sbjct: 174 -----AGPRSRRHSVSVDNRRSACAGVEALIAAGHRRIVVVSGAFVASDRARQRFAGYQD 228 Query: 121 AMQAAGLAPLPAIEVERHTLTAATDYQQMMADPLHRPTALFCSNDLLALSAMRDLRALGL 180 AM+A GL P + + HT + A + ++ PTA FC+NDLLA+ + DLR LGL Sbjct: 229 AMRAHGLRPAAPVCLPSHTASNAEQIRALVRAN-DAPTAFFCTNDLLAIGVISDLRRLGL 287 Query: 181 QVPEDISVMGFDGIPVGALMQPVLASVVQPSEQIGEVALRTLVDAIERAVPAVADVEGAA 240 VP DISV+G+DGI +G++++P LA+VVQP+ +IG A+ L+ + A A A Sbjct: 288 SVPRDISVLGYDGIALGSVVEPPLATVVQPNSEIGASAVGRLLAWLHDGGRASA----AP 343 Query: 241 PVVAAAEVRHILPHVLRQGGSVAAVSS 267 P V +LPH LR G+VAA S Sbjct: 344 PRVT------LLPHALRVNGTVAAPPS 364 >ref|YP_003745699.1| laci family transcriptional regulator [Ralstonia solanacearum CFBP2957] emb|CBJ43084.1| putative transcriptional regulator, LacI family [Ralstonia solanacearum CFBP2957] Length = 355 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 123/270 (45%), Positives = 163/270 (60%), Gaps = 29/270 (10%) Query: 1 MFTTTEYLPEDESAAVELLLGHRVDGVILTVADAGANATLDLLERERIPFVLAYNQLADA 60 M TT Y E E+ A+E +L RVDG++LTVADA AN LD L+ E +P+VLAYN Sbjct: 94 MLMTTAYDREREARAIETMLQQRVDGLVLTVADAAANPHLDRLDAECVPYVLAYN----- 148 Query: 61 AADADAEAATH-RASVSVDNRAAACDAVSHLIGLGHRRIQMLSGRFNASDRAMQRYCGYL 119 D + R SV+VDNRAAA DA+ L+ LGHRR++ML+G +ASDRA R+ GY Sbjct: 149 --DTQGQPRMPVRCSVTVDNRAAARDAIRALLALGHRRVRMLTGTLSASDRAALRHAGYR 206 Query: 120 DAMQAAGLAPLPAIEVERHT-LTAATDYQQMMADPLHRPTALFCSNDLLALSAMRDLRAL 178 DA+QAAG+ P P +E++ + A + +++A P PTA+FCSND LAL +R LR Sbjct: 207 DALQAAGIVPQPPVEIDFNAEAMAPAELDRLLAPPC--PTAVFCSNDRLALLTIRALRVR 264 Query: 179 GLQVPEDISVMGFDGIPVGALMQPVLASVVQPSEQIGEVALRTLVDAI-ERAVPAVADVE 237 GL+VPED+SV+GFDG+ +G + P LA+V QP QIG A R L I VP + Sbjct: 265 GLRVPEDLSVIGFDGLAMGQWLSPTLATVAQPHRQIGIDAARALARRIGGETVPPIT--- 321 Query: 238 GAAPVVAAAEVRHILPHVLRQGGSVAAVSS 267 LPH L GG++AA + Sbjct: 322 --------------LPHRLLPGGTLAAAPA 337