BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0454.p (339 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774020.1| DNA polymerase III subunit delta [Herbaspiri... 590 e-166 ref|YP_004754507.1| DNA polymerase III subunit delta [Collimonas... 549 e-154 ref|YP_001354588.1| DNA polymerase III subunit delta [Janthinoba... 531 e-149 ref|YP_001100906.1| DNA polymerase III subunit delta [Herminiimo... 529 e-148 ref|ZP_08274163.1| DNA polymerase III delta subunit [Oxalobacter... 446 e-123 >ref|YP_003774020.1| DNA polymerase III subunit delta [Herbaspirillum seropedicae SmR1] gb|ADJ62112.1| DNA polymerase III (delta subunit) protein [Herbaspirillum seropedicae SmR1] Length = 339 Score = 590 bits (1520), Expect = e-166, Method: Composition-based stats. Identities = 319/338 (94%), Positives = 329/338 (97%) Query: 1 MQLRHDSLDAHLGKSLAPLYVIASDEHLLALEAADKIRRSARANGYTEREVLVVERSFKW 60 MQLRHDSLDAHLGKSLAPLYVIASDEHLLALEAADKIRRSARANGYTEREVLVVERSFKW Sbjct: 1 MQLRHDSLDAHLGKSLAPLYVIASDEHLLALEAADKIRRSARANGYTEREVLVVERSFKW 60 Query: 61 GELLAANQSQSLFGDKKLIELRIPTGKPGKDGGQALQDYAANLSPDNLTIISLPKLDWAT 120 GELLAANQSQSLFGDKKLIELRIPTGKPGKDGGQALQDYAANLSPDNLTIISLPKLDWAT Sbjct: 61 GELLAANQSQSLFGDKKLIELRIPTGKPGKDGGQALQDYAANLSPDNLTIISLPKLDWAT 120 Query: 121 QKAAWVGALQQAAVYIDIPLVERAQLPAWIGNRLAAQQQSTDRACLDFIADRVEGNLLAA 180 QKAAWVGALQQAAVYIDIPLVER QLP WIGNRLAAQQQS DR CLDFIADRVEGNLLAA Sbjct: 121 QKAAWVGALQQAAVYIDIPLVERPQLPGWIGNRLAAQQQSADRPCLDFIADRVEGNLLAA 180 Query: 181 HQEIQKLALLHPPGKLSFEQVQDAVLNVARYDVFKLNEAMLSGDIARLTRMMDGLKGEGE 240 HQEIQKLALL+P G+LSFEQVQDAVLNVARYDVFKLNEAMLSGDIARLTRMM+GLKGEGE Sbjct: 181 HQEIQKLALLYPAGQLSFEQVQDAVLNVARYDVFKLNEAMLSGDIARLTRMMEGLKGEGE 240 Query: 241 ALPLVLWAVTEEIRTLLKLKSGMAQGKPVGALLKEYRIWGPRERLMEPALRRISLAALQT 300 ALPLVLWAVTEEIRTLLKLKSGMAQGKPVGALLKEYRIWGPRERLMEPALRRISLAAL+ Sbjct: 241 ALPLVLWAVTEEIRTLLKLKSGMAQGKPVGALLKEYRIWGPRERLMEPALRRISLAALEQ 300 Query: 301 ALQEAAQIDKMVKGLRAKAFSGDAWDALAQLGLKVARG 338 ALQEAA +D+MVKGLRA++F+GD WDAL QLGLK+ARG Sbjct: 301 ALQEAALVDRMVKGLRARSFAGDPWDALLQLGLKLARG 338 >ref|YP_004754507.1| DNA polymerase III subunit delta [Collimonas fungivorans Ter331] gb|AEK63684.1| DNA polymerase III delta subunit [Collimonas fungivorans Ter331] Length = 338 Score = 549 bits (1415), Expect = e-154, Method: Composition-based stats. Identities = 290/336 (86%), Positives = 310/336 (92%) Query: 1 MQLRHDSLDAHLGKSLAPLYVIASDEHLLALEAADKIRRSARANGYTEREVLVVERSFKW 60 MQLR D+LD HL K+LAPLYVI SDEHLLALEA+DKIR+SAR+NG +ER+VLVV+RSFKW Sbjct: 1 MQLRFDALDGHLAKTLAPLYVITSDEHLLALEASDKIRKSARSNGCSERDVLVVDRSFKW 60 Query: 61 GELLAANQSQSLFGDKKLIELRIPTGKPGKDGGQALQDYAANLSPDNLTIISLPKLDWAT 120 GELLAANQSQSLFGDKKLIELRIPTGKPGKDGGQALQ+Y A L+PDN+TIISLPKLDWAT Sbjct: 61 GELLAANQSQSLFGDKKLIELRIPTGKPGKDGGQALQNYTATLNPDNVTIISLPKLDWAT 120 Query: 121 QKAAWVGALQQAAVYIDIPLVERAQLPAWIGNRLAAQQQSTDRACLDFIADRVEGNLLAA 180 QKAAWV LQQ+AVYIDIPLVERA LP WIG RLAAQQQS DR LDFIADRVEGNLLAA Sbjct: 121 QKAAWVATLQQSAVYIDIPLVERAHLPNWIGVRLAAQQQSADRQSLDFIADRVEGNLLAA 180 Query: 181 HQEIQKLALLHPPGKLSFEQVQDAVLNVARYDVFKLNEAMLSGDIARLTRMMDGLKGEGE 240 HQEIQKLALLHPPGKLSFEQ DAVLNVARYDVFKLNEAML GD ARL RMMDGLKGEGE Sbjct: 181 HQEIQKLALLHPPGKLSFEQCHDAVLNVARYDVFKLNEAMLVGDTARLVRMMDGLKGEGE 240 Query: 241 ALPLVLWAVTEEIRTLLKLKSGMAQGKPVGALLKEYRIWGPRERLMEPALRRISLAALQT 300 ALPLVLWAV+EEIRTLLKLKS AQG+P+ ALLKEYRIWGPRERLMEPALRR+SLA L+ Sbjct: 241 ALPLVLWAVSEEIRTLLKLKSAAAQGRPIPALLKEYRIWGPRERLMEPALRRLSLATLEA 300 Query: 301 ALQEAAQIDKMVKGLRAKAFSGDAWDALAQLGLKVA 336 AL++AAQ+DKMVKGLRAKAFSGDAWDAL QLGLKVA Sbjct: 301 ALKDAAQVDKMVKGLRAKAFSGDAWDALLQLGLKVA 336 >ref|YP_001354588.1| DNA polymerase III subunit delta [Janthinobacterium sp. Marseille] gb|ABR89038.1| DNA polymerase III delta subunit [Janthinobacterium sp. Marseille] Length = 338 Score = 531 bits (1368), Expect = e-149, Method: Composition-based stats. Identities = 282/338 (83%), Positives = 312/338 (92%) Query: 1 MQLRHDSLDAHLGKSLAPLYVIASDEHLLALEAADKIRRSARANGYTEREVLVVERSFKW 60 MQLR D+LDAHL K LA LYVI SDEHLLALEAADKIR++ARA Y+EREVLVV+RSFKW Sbjct: 1 MQLRIDALDAHLNKPLAGLYVITSDEHLLALEAADKIRKAARAQAYSEREVLVVDRSFKW 60 Query: 61 GELLAANQSQSLFGDKKLIELRIPTGKPGKDGGQALQDYAANLSPDNLTIISLPKLDWAT 120 GELLAANQSQSLFGDKKLIELRIPTGKPGKDGG+ALQDYAA+LSPDN+T+I+LPKLDWAT Sbjct: 61 GELLAANQSQSLFGDKKLIELRIPTGKPGKDGGKALQDYAASLSPDNVTLITLPKLDWAT 120 Query: 121 QKAAWVGALQQAAVYIDIPLVERAQLPAWIGNRLAAQQQSTDRACLDFIADRVEGNLLAA 180 QKAAWV +LQQA+VYIDIPL+ERAQLPAW+G RLAAQ+QS +R CLDFIADRVEGNLLAA Sbjct: 121 QKAAWVTSLQQASVYIDIPLIERAQLPAWLGVRLAAQRQSANRECLDFIADRVEGNLLAA 180 Query: 181 HQEIQKLALLHPPGKLSFEQVQDAVLNVARYDVFKLNEAMLSGDIARLTRMMDGLKGEGE 240 HQEIQKLALL+P G LSFEQ+ DAVLNVARYDVFKLNEAMLSGD RL RM++GLKGEGE Sbjct: 181 HQEIQKLALLYPEGPLSFEQIHDAVLNVARYDVFKLNEAMLSGDTTRLVRMLEGLKGEGE 240 Query: 241 ALPLVLWAVTEEIRTLLKLKSGMAQGKPVGALLKEYRIWGPRERLMEPALRRISLAALQT 300 ALPLVLWAV EE+RTLLKLK+G+AQG+P+ L KEYRIWGPRERL+EPALRR+ LA L+ Sbjct: 241 ALPLVLWAVAEEVRTLLKLKAGVAQGRPLSQLTKEYRIWGPRERLVEPALRRLKLATLED 300 Query: 301 ALQEAAQIDKMVKGLRAKAFSGDAWDALAQLGLKVARG 338 ALQEAAQIDKMVKGLRAK FSGDAWDA+ QLGLK+ARG Sbjct: 301 ALQEAAQIDKMVKGLRAKQFSGDAWDAMLQLGLKIARG 338 >ref|YP_001100906.1| DNA polymerase III subunit delta [Herminiimonas arsenicoxydans] emb|CAL62785.1| DNA polymerase III, delta subunit [Herminiimonas arsenicoxydans] Length = 338 Score = 529 bits (1362), Expect = e-148, Method: Composition-based stats. Identities = 283/338 (83%), Positives = 313/338 (92%) Query: 1 MQLRHDSLDAHLGKSLAPLYVIASDEHLLALEAADKIRRSARANGYTEREVLVVERSFKW 60 MQLR D+L HL K LA LYVI SDEHLLALEAADKIR++ARA G++EREVLVV+RSFKW Sbjct: 1 MQLRIDALATHLTKPLAGLYVITSDEHLLALEAADKIRQTARAQGFSEREVLVVDRSFKW 60 Query: 61 GELLAANQSQSLFGDKKLIELRIPTGKPGKDGGQALQDYAANLSPDNLTIISLPKLDWAT 120 GELLAANQSQSLFGDKKLIELRIPTGKPG+DGG+ALQDYAA+LSPDN+T+I+LPKLDWAT Sbjct: 61 GELLAANQSQSLFGDKKLIELRIPTGKPGRDGGKALQDYAASLSPDNVTLITLPKLDWAT 120 Query: 121 QKAAWVGALQQAAVYIDIPLVERAQLPAWIGNRLAAQQQSTDRACLDFIADRVEGNLLAA 180 QKAAWV +LQQA+V+IDIPLVERAQLPAW+G RLAAQ QS DRACLDFIA+RVEGNLLAA Sbjct: 121 QKAAWVASLQQASVFIDIPLVERAQLPAWLGVRLAAQGQSADRACLDFIAERVEGNLLAA 180 Query: 181 HQEIQKLALLHPPGKLSFEQVQDAVLNVARYDVFKLNEAMLSGDIARLTRMMDGLKGEGE 240 HQEIQKLALL+P G LSFEQV DAVLNVARYDVFKLNEAMLSGD ARL RM++GL+GEGE Sbjct: 181 HQEIQKLALLYPAGPLSFEQVHDAVLNVARYDVFKLNEAMLSGDTARLVRMLEGLQGEGE 240 Query: 241 ALPLVLWAVTEEIRTLLKLKSGMAQGKPVGALLKEYRIWGPRERLMEPALRRISLAALQT 300 ALPLVLWAV EEIRTLLKLKSGMAQG+P+ L KE+RIWGPRERL+EPALRR+ LA L++ Sbjct: 241 ALPLVLWAVAEEIRTLLKLKSGMAQGRPLSQLTKEHRIWGPRERLIEPALRRLKLATLES 300 Query: 301 ALQEAAQIDKMVKGLRAKAFSGDAWDALAQLGLKVARG 338 ALQEAAQIDKMVKGLRAK FSGDAWDA+ QLGLK+ARG Sbjct: 301 ALQEAAQIDKMVKGLRAKKFSGDAWDAMLQLGLKIARG 338 >ref|ZP_08274163.1| DNA polymerase III delta subunit [Oxalobacteraceae bacterium IMCC9480] gb|EGF32367.1| DNA polymerase III delta subunit [Oxalobacteraceae bacterium IMCC9480] Length = 312 Score = 446 bits (1148), Expect = e-123, Method: Composition-based stats. Identities = 235/310 (75%), Positives = 276/310 (89%) Query: 28 LLALEAADKIRRSARANGYTEREVLVVERSFKWGELLAANQSQSLFGDKKLIELRIPTGK 87 +LALEAADKIR++ARA G +ER+VL V+RSFKWGEL AAN QSLFGD+KLIELR+PTGK Sbjct: 1 MLALEAADKIRKTARAQGLSERDVLQVDRSFKWGELTAANNEQSLFGDRKLIELRLPTGK 60 Query: 88 PGKDGGQALQDYAANLSPDNLTIISLPKLDWATQKAAWVGALQQAAVYIDIPLVERAQLP 147 PGK+GGQALQ YAA+ +PDN+T+I+LPKLDWAT KAAWVG LQQ+AVYI+IPL+ER QLP Sbjct: 61 PGKEGGQALQQYAASPNPDNVTLITLPKLDWATAKAAWVGTLQQSAVYIEIPLIERNQLP 120 Query: 148 AWIGNRLAAQQQSTDRACLDFIADRVEGNLLAAHQEIQKLALLHPPGKLSFEQVQDAVLN 207 WI RLAAQ QS +R L+F+A+RVEGNLLAAHQEIQKL LLH G+LSFEQV DAVLN Sbjct: 121 GWISTRLAAQGQSAERDALNFMAERVEGNLLAAHQEIQKLGLLHGDGQLSFEQVHDAVLN 180 Query: 208 VARYDVFKLNEAMLSGDIARLTRMMDGLKGEGEALPLVLWAVTEEIRTLLKLKSGMAQGK 267 VARYDVFKLNEAML+GD+ARL RM+DGL+GEGEALPLVLWAV EEIRTLLK+K+ M QG+ Sbjct: 181 VARYDVFKLNEAMLAGDVARLVRMLDGLQGEGEALPLVLWAVAEEIRTLLKIKTAMEQGQ 240 Query: 268 PVGALLKEYRIWGPRERLMEPALRRISLAALQTALQEAAQIDKMVKGLRAKAFSGDAWDA 327 PVG LLK+YRIWGPRE+LMEPALRR+S+A L+ A+Q+AAQ+D++VKGLRA A +GDAWDA Sbjct: 241 PVGQLLKQYRIWGPREKLMEPALRRLSMATLEAAIQKAAQLDRLVKGLRAPALAGDAWDA 300 Query: 328 LAQLGLKVAR 337 + QL L VAR Sbjct: 301 MRQLALGVAR 310