BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.0452.p         (141 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774018.1| inner membrane protein [Herbaspirillum serop...   227   5e-58
ref|YP_001100909.1| hypothetical protein HEAR2666 [Herminiimonas...   181   2e-44
ref|YP_001630419.1| hypothetical protein Bpet1811 [Bordetella pe...   180   7e-44
ref|YP_001354590.1| hypothetical protein mma_2900 [Janthinobacte...   179   9e-44
ref|YP_004754509.1| hypothetical protein CFU_3862 [Collimonas fu...   172   1e-41

>ref|YP_003774018.1| inner membrane protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ62110.1| inner membrane protein [Herbaspirillum seropedicae SmR1]
          Length = 141

 Score =  227 bits (578), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 133/141 (94%), Positives = 137/141 (97%)

Query: 1   MLWIKALHIVFIASWFAGLFYLPRIFVNLAQETDLVARERLLGMARRLYRFTGMISLVAL 60
           MLWIKALHIVFIASWFAGLFYLPRIFVNLAQET++ +RERLLGMARRLYRFTGMISLVAL
Sbjct: 1   MLWIKALHIVFIASWFAGLFYLPRIFVNLAQETEVASRERLLGMARRLYRFTGMISLVAL 60

Query: 61  VLGVWLLAITWSFWKGPGNGWLHAKLFLVVLVIGYQHACGSLLKKFEHGKNVRSHVWYRW 120
            LGVWLL +TW FWKGPGNGWLHAKLFLVVLVIGYQHACGSLLKKFEHGKNVRSHVWYRW
Sbjct: 61  ALGVWLLVLTWQFWKGPGNGWLHAKLFLVVLVIGYQHACGSLLKKFEHGKNVRSHVWYRW 120

Query: 121 FNEVPVLLMLAIVILVVVKPF 141
           FNEVPVLLMLAIVILVVVKPF
Sbjct: 121 FNEVPVLLMLAIVILVVVKPF 141


>ref|YP_001100909.1| hypothetical protein HEAR2666 [Herminiimonas arsenicoxydans]
 emb|CAL62788.1| Conserved hypothetical protein; putative membrane protein
           [Herminiimonas arsenicoxydans]
          Length = 139

 Score =  181 bits (460), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 105/141 (74%), Positives = 120/141 (85%), Gaps = 2/141 (1%)

Query: 1   MLWIKALHIVFIASWFAGLFYLPRIFVNLAQETDLVARERLLGMARRLYRFTGMISLVAL 60
           MLWIKALHIVF+ SWFAGLFYLPRIFVNLA ETD  +  RLL MAR+LYRFT +++L A+
Sbjct: 1   MLWIKALHIVFVISWFAGLFYLPRIFVNLAMETDTTSTTRLLLMARKLYRFTTILALPAV 60

Query: 61  VLGVWLLAITWSFWKGPGNGWLHAKLFLVVLVIGYQHACGSLLKKFEHGKNVRSHVWYRW 120
           V G+ LL  ++ F +GPGNGWLHAKL LVV++IGY HACGSLLKKFE G N RSH WYRW
Sbjct: 61  VFGLALL--SYGFGQGPGNGWLHAKLVLVVVLIGYHHACGSLLKKFERGANKRSHTWYRW 118

Query: 121 FNEVPVLLMLAIVILVVVKPF 141
           FNEVPV+L+LAIVILVVVKPF
Sbjct: 119 FNEVPVVLLLAIVILVVVKPF 139


>ref|YP_001630419.1| hypothetical protein Bpet1811 [Bordetella petrii DSM 12804]
 emb|CAP42150.1| conserved hypothetical protein [Bordetella petrii]
          Length = 206

 Score =  180 bits (456), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 92/141 (65%), Positives = 118/141 (83%), Gaps = 1/141 (0%)

Query: 1   MLWIKALHIVFIASWFAGLFYLPRIFVNLAQETDLVARERLLGMARRLYRFTGMISLVAL 60
           MLW+KA HIVFIASWFAGLFYLPR++VNLAQ+ D   +  L+ MARRLYRFT M++++A+
Sbjct: 67  MLWVKAFHIVFIASWFAGLFYLPRLYVNLAQQPDHAVQSCLVSMARRLYRFTTMLAVIAV 126

Query: 61  VLGVWLLAITWSFWKGPGNGWLHAKLFLVVLVIGYQHACGSLLKKFEHGKNVRSHVWYRW 120
            LG+WL  + +    GPGNGW+HAKLF V+L+IGY HACG +L+KFE G+N RSH +YRW
Sbjct: 127 ALGLWLY-VGYGIGMGPGNGWMHAKLFFVLLIIGYHHACGVMLRKFEQGRNTRSHKFYRW 185

Query: 121 FNEVPVLLMLAIVILVVVKPF 141
           FNEVPVLL++A+V+LVV+KPF
Sbjct: 186 FNEVPVLLLVAVVLLVVLKPF 206


>ref|YP_001354590.1| hypothetical protein mma_2900 [Janthinobacterium sp. Marseille]
 gb|ABR90127.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
          Length = 139

 Score =  179 bits (455), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 103/141 (73%), Positives = 120/141 (85%), Gaps = 2/141 (1%)

Query: 1   MLWIKALHIVFIASWFAGLFYLPRIFVNLAQETDLVARERLLGMARRLYRFTGMISLVAL 60
           MLWIK+LHIVF+ SWFAGLFYLPRIFVNLA ETD  A  RLL MAR+LYRFT ++++ A+
Sbjct: 1   MLWIKSLHIVFVISWFAGLFYLPRIFVNLAMETDATATTRLLLMARKLYRFTTILAVPAV 60

Query: 61  VLGVWLLAITWSFWKGPGNGWLHAKLFLVVLVIGYQHACGSLLKKFEHGKNVRSHVWYRW 120
           + GV LL   + F +GPGNGWLHAK+ LV+LVIGYQHAC SLLKKFEHG N RSH W+RW
Sbjct: 61  LFGVGLL--FYGFGQGPGNGWLHAKVVLVILVIGYQHACNSLLKKFEHGVNKRSHTWFRW 118

Query: 121 FNEVPVLLMLAIVILVVVKPF 141
           FNEVP++L+LAIVILVVVKPF
Sbjct: 119 FNEVPIVLLLAIVILVVVKPF 139


>ref|YP_004754509.1| hypothetical protein CFU_3862 [Collimonas fungivorans Ter331]
 gb|AEK63686.1| Hypothetical membrane protein [Collimonas fungivorans Ter331]
          Length = 140

 Score =  172 bits (437), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 111/141 (78%), Positives = 121/141 (85%), Gaps = 1/141 (0%)

Query: 1   MLWIKALHIVFIASWFAGLFYLPRIFVNLAQETDLVARERLLGMARRLYRFTGMISLVAL 60
           MLWIK+LHIVFIASWFAGLFYLPRI VNLAQETD  A  RLL MAR+LYRFT M++L A+
Sbjct: 1   MLWIKSLHIVFIASWFAGLFYLPRILVNLAQETDTAATTRLLLMARKLYRFTTMLALPAI 60

Query: 61  VLGVWLLAITWSFWKGPGNGWLHAKLFLVVLVIGYQHACGSLLKKFEHGKNVRSHVWYRW 120
           V G WL  + +   KGPGNGWLHAKLFLV+LVIGY HACGSLLKKFE+G N RSHVW RW
Sbjct: 61  VFGAWLW-LGYGIGKGPGNGWLHAKLFLVILVIGYHHACGSLLKKFENGVNTRSHVWLRW 119

Query: 121 FNEVPVLLMLAIVILVVVKPF 141
           FNEVPVLL+LAIVILVVVKPF
Sbjct: 120 FNEVPVLLLLAIVILVVVKPF 140