BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.0449.p         (137 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774015.1| membrane protein [Herbaspirillum seropedicae...   201   3e-50
ref|YP_002892839.1| DoxX family protein [Tolumonas auensis DSM 9...   133   9e-30
ref|YP_002823848.1| hypothetical protein NGR_b16440 [Sinorhizobi...   129   1e-28
ref|YP_002823671.1| hypothetical protein NGR_b14670 [Sinorhizobi...   126   9e-28
ref|YP_003732149.1| DoxX family protein [Acinetobacter sp. DR1] ...   126   9e-28

>ref|YP_003774015.1| membrane protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ62107.1| membrane protein [Herbaspirillum seropedicae SmR1]
          Length = 138

 Score =  201 bits (511), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 132/137 (96%), Positives = 137/137 (100%)

Query: 1   MTTVTVNTRADYAAFLLRVTMGIFFLVHAGLKLFVFTPAGTVGFFASLGVPGWFAYPVMA 60
           M+TVTVNTRADYAAFLLRVTMG+FFLVHAGLK+FVFTPAGTVGFFASLGVPGWFAYPV+A
Sbjct: 1   MSTVTVNTRADYAAFLLRVTMGVFFLVHAGLKIFVFTPAGTVGFFASLGVPGWFAYPVIA 60

Query: 61  LEVVGGIALVLGFYGRWLALPLAADLLGAIVLVHGKAGFFFTNPKGGWEYLALWIVGLIA 120
           LEVVGGIALVLG+YGRWLALPLAADLLGAIVLVHGKAGFFFTNPKGGWEYLALWIVGLIA
Sbjct: 61  LEVVGGIALVLGYYGRWLALPLAADLLGAIVLVHGKAGFFFTNPKGGWEYLALWIVGLIA 120

Query: 121 VFLLGDGAFALKREEPR 137
           VFLLGDGAFALKREEPR
Sbjct: 121 VFLLGDGAFALKREEPR 137


>ref|YP_002892839.1| DoxX family protein [Tolumonas auensis DSM 9187]
 gb|ACQ93253.1| DoxX family protein [Tolumonas auensis DSM 9187]
          Length = 135

 Score =  133 bits (334), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 80/129 (62%), Positives = 95/129 (73%)

Query: 4   VTVNTRADYAAFLLRVTMGIFFLVHAGLKLFVFTPAGTVGFFASLGVPGWFAYPVMALEV 63
           +T N  A YAA ++R+ +G  FL H GLK FVFTPAGT  FF SLG+PG  AY  M +E+
Sbjct: 1   MTNNHTAPYAALIMRLALGTLFLAHFGLKYFVFTPAGTAQFFTSLGLPGGLAYLTMGVEL 60

Query: 64  VGGIALVLGFYGRWLALPLAADLLGAIVLVHGKAGFFFTNPKGGWEYLALWIVGLIAVFL 123
           +GGIAL+LG Y R +A+ L   LLGAIV VHG AGFFF+NP GGWE+LA WIVGLI + L
Sbjct: 61  IGGIALILGIYARIVAVALIPILLGAIVTVHGSAGFFFSNPNGGWEFLAFWIVGLIVLAL 120

Query: 124 LGDGAFALK 132
            GDG FALK
Sbjct: 121 TGDGKFALK 129


>ref|YP_002823848.1| hypothetical protein NGR_b16440 [Sinorhizobium fredii NGR234]
 gb|AAQ87226.1| Hypothetical protein RNGR00204 [Sinorhizobium fredii NGR234]
 gb|ACP23095.1| hypothetical protein NGR_b16440 [Sinorhizobium fredii NGR234]
          Length = 138

 Score =  129 bits (324), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 80/123 (65%), Positives = 95/123 (77%)

Query: 10  ADYAAFLLRVTMGIFFLVHAGLKLFVFTPAGTVGFFASLGVPGWFAYPVMALEVVGGIAL 69
           A YA  +LRVT+G+ FL HAGLK+FVFTPAGT  FFASLG+P   AY  +ALE +GG+AL
Sbjct: 7   APYAILMLRVTLGLLFLAHAGLKVFVFTPAGTAQFFASLGLPAALAYLTIALETLGGLAL 66

Query: 70  VLGFYGRWLALPLAADLLGAIVLVHGKAGFFFTNPKGGWEYLALWIVGLIAVFLLGDGAF 129
           + GF+ R  AL L   LLGAI++VH  AGFFFTNP GGWE+LALWIVGL AV L GDGA 
Sbjct: 67  IAGFFARVAALVLIPVLLGAIIMVHAAAGFFFTNPNGGWEFLALWIVGLAAVVLAGDGAL 126

Query: 130 ALK 132
           A++
Sbjct: 127 AVR 129


>ref|YP_002823671.1| hypothetical protein NGR_b14670 [Sinorhizobium fredii NGR234]
 gb|ACP22918.1| hypothetical protein NGR_b14670 [Sinorhizobium fredii NGR234]
          Length = 138

 Score =  126 bits (317), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 80/123 (65%), Positives = 91/123 (73%)

Query: 10  ADYAAFLLRVTMGIFFLVHAGLKLFVFTPAGTVGFFASLGVPGWFAYPVMALEVVGGIAL 69
           A YA  +LRV +G+ FL HAGLK FVFTPAGT  FFASLG+P   AY  +ALE VGG+AL
Sbjct: 7   APYAILILRVALGLLFLAHAGLKAFVFTPAGTAQFFASLGLPPALAYLTIALETVGGLAL 66

Query: 70  VLGFYGRWLALPLAADLLGAIVLVHGKAGFFFTNPKGGWEYLALWIVGLIAVFLLGDGAF 129
           V GF+ R  AL L   LLGAI+ VH  AGFFFTNP GGWE+ ALWIVGL AV L GDGA 
Sbjct: 67  VAGFFARLAALALIPVLLGAIMTVHAAAGFFFTNPNGGWEFPALWIVGLAAVVLAGDGAL 126

Query: 130 ALK 132
           A++
Sbjct: 127 AIR 129


>ref|YP_003732149.1| DoxX family protein [Acinetobacter sp. DR1]
 gb|ADI90776.1| DoxX family protein [Acinetobacter sp. DR1]
          Length = 134

 Score =  126 bits (317), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 72/130 (55%), Positives = 93/130 (71%)

Query: 4   VTVNTRADYAAFLLRVTMGIFFLVHAGLKLFVFTPAGTVGFFASLGVPGWFAYPVMALEV 63
           +  +  A YAA LLR+T+ ++F  HAGLKLFVFTPAGT  FF S+GVPGW AY  +  E+
Sbjct: 1   MNTSNTAPYAALLLRITLALYFFAHAGLKLFVFTPAGTAQFFQSVGVPGWMAYVTILWEI 60

Query: 64  VGGIALVLGFYGRWLALPLAADLLGAIVLVHGKAGFFFTNPKGGWEYLALWIVGLIAVFL 123
           +G I L +GF  R +A+ L   LLGAI  VHG AGFFFTNP GGWE+  +WI+ L+A+ L
Sbjct: 61  LGAILLFVGFKPRIVAIALIPVLLGAIFTVHGAAGFFFTNPNGGWEFPFMWIISLVALAL 120

Query: 124 LGDGAFALKR 133
           +GDG F+L +
Sbjct: 121 IGDGPFSLSK 130