BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0447.p (296 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774014.1| hypothetical protein Hsero_0587 [Herbaspiril... 494 e-138 ref|YP_002894049.1| Extradiol ring-cleavage dioxygenase class II... 259 4e-67 ref|YP_934371.1| protocatechuate 4,5-dioxygenase [Azoarcus sp. B... 258 9e-67 gb|EGW61099.1| Extradiol ring-cleavage dioxygenase class III pro... 248 8e-64 ref|YP_004380019.1| extradiol ring-cleavage dioxygenase III subu... 244 1e-62 >ref|YP_003774014.1| hypothetical protein Hsero_0587 [Herbaspirillum seropedicae SmR1] gb|ADJ62106.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 280 Score = 494 bits (1272), Expect = e-138, Method: Composition-based stats. Identities = 256/280 (91%), Positives = 268/280 (95%), Gaps = 1/280 (0%) Query: 18 MST-SSDSLPLPSLFVSHGSPMLAVEPGRTGPLLASIGATLPRPRGIVMVSPHWETFTPR 76 MST ++DSLPLPSLFVSHGSPMLAVEPGRTGPLLA IGATLPRPRGIV+VSPHWETFTPR Sbjct: 1 MSTIAADSLPLPSLFVSHGSPMLAVEPGRTGPLLAGIGATLPRPRGIVVVSPHWETFTPR 60 Query: 77 VGNQAKPRVIHDFGGFPQELYELDYPAPGAPALAEHVAQRLRDGGLPANTDGGWGLDHGA 136 VGNQAKPRVIHDFGGFP LYELDYPAPGAPALAEHVAQRLRDGGLPA+TDGGWGLDHGA Sbjct: 61 VGNQAKPRVIHDFGGFPPALYELDYPAPGAPALAEHVAQRLRDGGLPAHTDGGWGLDHGA 120 Query: 137 WVPLRYLYPQADVPVIQLSLQSQQPPEYHYQVGRLLAPLAKEGILLVGSGSFTHNLRELR 196 WVPLRYLYPQADVPVIQLSLQSQQPP YH+QVG+LLAPLAKEGILLVGSGSFTHNLRELR Sbjct: 121 WVPLRYLYPQADVPVIQLSLQSQQPPAYHFQVGQLLAPLAKEGILLVGSGSFTHNLRELR 180 Query: 197 RNEIEGGDAPHTLEFLRWFLDRMQAGDLQALFGYRTTAPHAVRTHPSDEHLLSLFFAMGA 256 RN+ + GDAPHTL+FL+WFLDRMQAGD ALFGYRTTAPHAVR HPSDEHLL+LFFAMGA Sbjct: 181 RNDADSGDAPHTLQFLQWFLDRMQAGDRDALFGYRTTAPHAVRNHPSDEHLLTLFFAMGA 240 Query: 257 ADDWTQLVHLDSGSTYHSLRMDAFAFGTGARLLAQLPAAA 296 ADDWTQLVHLDSGSTYHSLRMDAFAFGTG+RLLAQ P AA Sbjct: 241 ADDWTQLVHLDSGSTYHSLRMDAFAFGTGSRLLAQQPVAA 280 >ref|YP_002894049.1| Extradiol ring-cleavage dioxygenase class III protein subunit B [Tolumonas auensis DSM 9187] gb|ACQ94463.1| Extradiol ring-cleavage dioxygenase class III protein subunit B [Tolumonas auensis DSM 9187] Length = 268 Score = 259 bits (662), Expect = 4e-67, Method: Composition-based stats. Identities = 140/268 (52%), Positives = 179/268 (66%), Gaps = 8/268 (2%) Query: 27 LPSLFVSHGSPMLAVEPGRTGPLLASIGATLPRPRGIVMVSPHWETFTPRVGNQAKPRVI 86 LP+LF+SHGSPMLA+EPG TGP+L IG LP+P+ ++++S HW T P + + P I Sbjct: 4 LPTLFISHGSPMLALEPGTTGPVLTRIGQQLPKPKAVLVISAHWLTQQPTLTSSLTPETI 63 Query: 87 HDFGGFPQELYELDYPAPGAPALAEHVAQRLRDGGLPANTDGGWGLDHGAWVPLRYLYPQ 146 HDFGGFP+ LY L YPAPG+PALAE V L+ GL D GLDHGAWVPLRYLYP Sbjct: 64 HDFGGFPRALYALQYPAPGSPALAEQVQAMLQQVGL----DAQRGLDHGAWVPLRYLYPD 119 Query: 147 ADVPVIQLSLQSQQPPEYHYQVGRLLAPLAKEGILLVGSGSFTHNLRELRRN---EIEGG 203 DVPV+QLSL P+ + +G+LL L+ EG+L++ SGSFTHNL EL + E+ Sbjct: 120 TDVPVVQLSLNPSVSPKLQFALGQLLRGLSDEGVLILASGSFTHNLGELHWDSPEELPEA 179 Query: 204 DAPHTLEFLRWFLDRMQAGDLQALFGYRTTAPHAVRTHPSDEHLLSLFFAMGAADDWTQL 263 P+ +F W + R++A D+ AL YR APHA R HP+DEHLL LF A+GAAD T++ Sbjct: 180 GDPYVDQFRDWVIARIEAHDIDALNDYRKLAPHARRAHPTDEHLLPLFVALGAADS-TEV 238 Query: 264 VHLDSGSTYHSLRMDAFAFGTGARLLAQ 291 V L +L MD FAFG+G LL + Sbjct: 239 VRLHKDVALGTLAMDVFAFGSGGGLLKE 266 >ref|YP_934371.1| protocatechuate 4,5-dioxygenase [Azoarcus sp. BH72] emb|CAL95484.1| protocatechuate 4,5-dioxygenase [Azoarcus sp. BH72] Length = 268 Score = 258 bits (658), Expect = 9e-67, Method: Composition-based stats. Identities = 144/265 (54%), Positives = 176/265 (66%), Gaps = 3/265 (1%) Query: 20 TSSDSLPLPSLFVSHGSPMLAVEPGRTGPLLASIGATLPRPRGIVMVSPHWETFTPRVGN 79 T++ PLP+LFVSHGSPM A+ PG GP+LA+ A +PRPR +V VSPHW T +P V Sbjct: 2 TTTHPAPLPTLFVSHGSPMFALNPGEAGPVLAAFAARVPRPRAVVAVSPHWMTRSPEVLA 61 Query: 80 QAKPRVIHDFGGFPQELYELDYPAPGAPALAEHVAQRLRDGGLPANTDGGWGLDHGAWVP 139 A+P +HDFGGFP+ELY LDYPAPGAP +A V L G+ + G DHG WVP Sbjct: 62 SAQPATVHDFGGFPRELYALDYPAPGAPGVAAEVIALLAGHGVTVQANELAGRDHGTWVP 121 Query: 140 LRYLYPQADVPVIQLSLQSQQPPEYHYQVGRLLAPLAKEGILLVGSGSFTHNLRELRRNE 199 L +LYP ADVPVIQLS + + P ++GR LAPL ++GILL+GSGS THNL E R Sbjct: 122 LMHLYPDADVPVIQLSQPATRSPLVLLELGRALAPLREQGILLMGSGSITHNLYEFRAP- 180 Query: 200 IEGGDAPHTLEFLRWFLDRMQAGDLQALFGYRTTAPHAVRTHPSDEHLLSLFFAMGAAD- 258 D + EF W + + AGDL+AL YRT APHAVR HP+DEHLL L+FA+GAA Sbjct: 181 -RDPDDHYASEFTDWMWNTIAAGDLEALLDYRTRAPHAVRAHPTDEHLLPLYFALGAAGA 239 Query: 259 DWTQLVHLDSGSTYHSLRMDAFAFG 283 WT+ L G T L MD+FAFG Sbjct: 240 AWTRATRLPGGVTDGVLAMDSFAFG 264 >gb|EGW61099.1| Extradiol ring-cleavage dioxygenase class III protein subunit B [Dechlorosoma suillum PS] Length = 281 Score = 248 bits (633), Expect = 8e-64, Method: Composition-based stats. Identities = 132/263 (50%), Positives = 171/263 (65%), Gaps = 4/263 (1%) Query: 25 LPLPSLFVSHGSPMLAVEPGRTGPLLASIGATLPRPRGIVMVSPHWETFTPRVGNQAKPR 84 + LP+LF+SHG+P A+EPG GP L +G LP+PR +V+VSPHW T V P Sbjct: 1 MTLPTLFISHGAPTFALEPGIIGPRLTVLGRQLPKPRAVVVVSPHWITAGLEVATSPWPE 60 Query: 85 VIHDFGGFPQELYELDYPAPGAPALAEHVAQRLRDGGLPANTDGGWGLDHGAWVPLRYLY 144 IHDFGGFP+ LY+L YPA GAP +A V + L G P ++ GLDHGAWVPL +LY Sbjct: 61 TIHDFGGFPEALYQLRYPAAGAPEVAAEVLEALARAGFPGRSNPHRGLDHGAWVPLMHLY 120 Query: 145 PQADVPVIQLSLQSQQPPEYHYQVGRLLAPLAKEGILLVGSGSFTHNLRELRRNEIEGGD 204 P+ADVPV+QLSL P+ +GR LAPL ++G+LL+ SGS THNL + R + GG+ Sbjct: 121 PEADVPVVQLSLPMTGSPQVLLALGRALAPLRQQGVLLLASGSITHNLMDFR---LGGGE 177 Query: 205 APHTLEFLRWFLDRMQAGDLQALFGYRTTAPHAVRTHPSDEHLLSLFFAMG-AADDWTQL 263 A + EF+ W D + AGDL+AL R APHAVR HP+DEHL L A+G A +DW+ Sbjct: 178 AAYAREFMEWVADTIAAGDLEALLDLRRRAPHAVRAHPTDEHLQPLLVAIGTAGEDWSAA 237 Query: 264 VHLDSGSTYHSLRMDAFAFGTGA 286 L+ G Y + MD++AFG A Sbjct: 238 RRLEGGLVYGVIGMDSYAFGVTA 260 >ref|YP_004380019.1| extradiol ring-cleavage dioxygenase III subunit B [Pseudomonas mendocina NK-01] gb|AEB58266.1| extradiol ring-cleavage dioxygenase III subunit B [Pseudomonas mendocina NK-01] Length = 255 Score = 244 bits (623), Expect = 1e-62, Method: Composition-based stats. Identities = 138/256 (53%), Positives = 171/256 (66%), Gaps = 3/256 (1%) Query: 27 LPSLFVSHGSPMLAVEPGRTGPLLASIGATLPRPRGIVMVSPHWETFTPRVGNQAKPRVI 86 LPSLF+SHGSPMLA+EPG +GP LA + A LP P+ IV+VS HWE+ + +P+ Sbjct: 2 LPSLFISHGSPMLALEPGASGPALAKLAAELPSPKAIVVVSAHWESRQLLLTAGEQPQTW 61 Query: 87 HDFGGFPQELYELDYPAPGAPALAEHVAQRLRDGGLPANTDGGWGLDHGAWVPLRYLYPQ 146 HDFGGFP LY + YPAPGAPALA +AQ+L + GL D DHGAWVPL +YPQ Sbjct: 62 HDFGGFPAPLYAVQYPAPGAPALAGEIAQQLNEAGLATELDAQRPFDHGAWVPLSLMYPQ 121 Query: 147 ADVPVIQLSLQSQQPPEYHYQVGRLLAPLAKEGILLVGSGSFTHNLRELRRNEIEGGDAP 206 AD+PV+QLSL S++ PE +VGR LA L ++GILL+GSGS THNL EL P Sbjct: 122 ADIPVVQLSLPSREGPELQTRVGRALASLREQGILLIGSGSITHNLGELSWRAGPEVITP 181 Query: 207 HTLEFLRWFLDRMQAGDLQALFGYRTTAPHAVRTHPSDEHLLSLFFAMGAADDWTQLVHL 266 EF W ++++ A D QAL YR AP AVR HPS+EHLL LFFA GA ++ +VH Sbjct: 182 WAKEFRDWVVEKLGADDEQALHQYRRLAPDAVRNHPSEEHLLPLFFARGAGGAFS-VVH- 239 Query: 267 DSGSTYHSLRMDAFAF 282 SG TY +L MD + F Sbjct: 240 -SGFTYGALGMDIYRF 254