BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0446.p (255 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774013.1| LysR family transcription regulator protein ... 456 e-126 ref|YP_001630476.1| LysR family transcriptional regulator [Borde... 302 4e-80 gb|EGW61098.1| transcriptional regulator, LysR family [Dechloros... 285 3e-75 ref|YP_523781.1| LysR family transcriptional regulator [Rhodofer... 282 4e-74 ref|ZP_01894954.1| transcriptional regulator, LysR family protei... 278 8e-73 >ref|YP_003774013.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ62105.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 299 Score = 456 bits (1173), Expect = e-126, Method: Composition-based stats. Identities = 216/250 (86%), Positives = 236/250 (94%) Query: 1 MQRTTRRLSLTEAGSLYLERCKQIVAALEEADDLLLAGSAKPAGLLRINAPVTFGILHLA 60 MQRTTRRLSLTEAG+LYLERCKQIVAALEEADDLL +GSAKP GLLRINAP+TFG+LHLA Sbjct: 49 MQRTTRRLSLTEAGALYLERCKQIVAALEEADDLLSSGSAKPTGLLRINAPLTFGVLHLA 108 Query: 61 PLWPIFLERHPEVELDITLSDRIVDIIDEGYDLAIRIARLADSTLIHRKLTSTSLPICAS 120 PLWP+FLERHPE+ LDITLSDRIVDIIDEGYD+AIRIARL+DSTL+HRKLTSTSL +CAS Sbjct: 109 PLWPMFLERHPEISLDITLSDRIVDIIDEGYDMAIRIARLSDSTLVHRKLTSTSLHVCAS 168 Query: 121 PGYLEQHGTPRHPHELAQHQIISYSYNHGKDEWQFSGPEGPVSVRVNARMHVNNGDSCVQ 180 P YL+ HGTP HPHELAQHQ ISYSYN KDEWQF+GPEGPVSVRV++R+HVNNGDSCVQ Sbjct: 169 PAYLDAHGTPAHPHELAQHQTISYSYNQSKDEWQFNGPEGPVSVRVSSRLHVNNGDSCVQ 228 Query: 181 AALGGIGITRQPTFMIDQYLRSGQLVPLLTDYTVPDLGIYAVYPSRAHLPAKVRAMLDFL 240 AALGGIGITRQPTFMIDQYLRSGQLV +L DY P+LGIYAVYPSRAHLPAK+RAMLDFL Sbjct: 229 AALGGIGITRQPTFMIDQYLRSGQLVSILGDYGAPELGIYAVYPSRAHLPAKMRAMLDFL 288 Query: 241 SEAFAQVHWS 250 +EAFAQVHW+ Sbjct: 289 TEAFAQVHWN 298 >ref|YP_001630476.1| LysR family transcriptional regulator [Bordetella petrii DSM 12804] emb|CAP42207.1| transcriptional regulator, LysR-family [Bordetella petrii] Length = 299 Score = 302 bits (773), Expect = 4e-80, Method: Composition-based stats. Identities = 140/249 (56%), Positives = 185/249 (74%) Query: 1 MQRTTRRLSLTEAGSLYLERCKQIVAALEEADDLLLAGSAKPAGLLRINAPVTFGILHLA 60 MQRTTRR SLTE G L+ ERCK ++A +E+A+ + + S + GLLR+NAP+TFG+ HLA Sbjct: 49 MQRTTRRQSLTEEGQLFYERCKMLLAEVEDAETEVNSRSGEVGGLLRVNAPLTFGVRHLA 108 Query: 61 PLWPIFLERHPEVELDITLSDRIVDIIDEGYDLAIRIARLADSTLIHRKLTSTSLPICAS 120 PLW +F +HP + LDITL+DR+VD++DEGYD+A+RI +LADSTLI R L ST + +CAS Sbjct: 109 PLWAVFKAQHPRLTLDITLADRVVDLVDEGYDVAVRITQLADSTLISRHLASTRMVLCAS 168 Query: 121 PGYLEQHGTPRHPHELAQHQIISYSYNHGKDEWQFSGPEGPVSVRVNARMHVNNGDSCVQ 180 P Y++ HG P HP ELA H I+YSY G+DEW+F G EG VSVR+ M NNGD+CVQ Sbjct: 169 PAYIQAHGRPEHPKELAMHAAIAYSYWAGRDEWRFHGSEGEVSVRIQPVMRANNGDTCVQ 228 Query: 181 AALGGIGITRQPTFMIDQYLRSGQLVPLLTDYTVPDLGIYAVYPSRAHLPAKVRAMLDFL 240 AAL +G+ QPTF++ LR+G LV L+ Y +LGIYA+YP+R H+P +VRA++DFL Sbjct: 229 AALAHLGVILQPTFLVGDALRAGSLVELMPQYRCAELGIYAMYPTRRHVPPRVRALVDFL 288 Query: 241 SEAFAQVHW 249 + FA W Sbjct: 289 AGHFAHAPW 297 >gb|EGW61098.1| transcriptional regulator, LysR family [Dechlorosoma suillum PS] Length = 299 Score = 285 bits (730), Expect = 3e-75, Method: Composition-based stats. Identities = 140/249 (56%), Positives = 178/249 (71%) Query: 1 MQRTTRRLSLTEAGSLYLERCKQIVAALEEADDLLLAGSAKPAGLLRINAPVTFGILHLA 60 + RTTRRLSLTEAG LYLER KQI+ LE+AD + + + G L++NAP++FG+LHLA Sbjct: 49 LHRTTRRLSLTEAGRLYLERSKQILEELEDADSAVGLTTNRAVGQLKVNAPLSFGVLHLA 108 Query: 61 PLWPIFLERHPEVELDITLSDRIVDIIDEGYDLAIRIARLADSTLIHRKLTSTSLPICAS 120 PLW FL HPEV LD++L+DR+VD+++EGYDLA+RI RL DS+L+ R+L ST + +CAS Sbjct: 109 PLWGAFLATHPEVSLDVSLNDRVVDLVEEGYDLAVRITRLPDSSLVSRRLASTRILLCAS 168 Query: 121 PGYLEQHGTPRHPHELAQHQIISYSYNHGKDEWQFSGPEGPVSVRVNARMHVNNGDSCVQ 180 P YL HGTPR +LA+HQ I YSY+ D + GP G SV + R H NNGD+C Sbjct: 169 PQYLAAHGTPRTLADLARHQFIGYSYSPSGDTLELEGPHGTESVNLRPRFHANNGDTCRA 228 Query: 181 AALGGIGITRQPTFMIDQYLRSGQLVPLLTDYTVPDLGIYAVYPSRAHLPAKVRAMLDFL 240 AAL GI QPTF+ Q L SG+LVP+L Y +LGIYAVYPSR HL KVRA+++FL Sbjct: 229 AALDHQGIVFQPTFLCHQDLASGRLVPILPQYKQRELGIYAVYPSRKHLSGKVRALVNFL 288 Query: 241 SEAFAQVHW 249 + AF Q W Sbjct: 289 ATAFEQAPW 297 >ref|YP_523781.1| LysR family transcriptional regulator [Rhodoferax ferrireducens T118] gb|ABD70250.1| transcriptional regulator, LysR family [Rhodoferax ferrireducens T118] Length = 299 Score = 282 bits (721), Expect = 4e-74, Method: Composition-based stats. Identities = 138/246 (56%), Positives = 183/246 (74%) Query: 1 MQRTTRRLSLTEAGSLYLERCKQIVAALEEADDLLLAGSAKPAGLLRINAPVTFGILHLA 60 + RTTRRLSLT+ G ++ R K+++A L EA+D + + S +GLLRINAP TFG+LHLA Sbjct: 49 LHRTTRRLSLTDEGQIFYVRSKELLAELAEAEDEITSRSDAASGLLRINAPFTFGVLHLA 108 Query: 61 PLWPIFLERHPEVELDITLSDRIVDIIDEGYDLAIRIARLADSTLIHRKLTSTSLPICAS 120 PLW F RHP V+LD+TL+DR+VD+++EGYD+AIRIA L +STL+ ++L +T + +CAS Sbjct: 109 PLWGAFRVRHPNVKLDVTLADRLVDLVEEGYDVAIRIANLENSTLVSKRLATTRMVLCAS 168 Query: 121 PGYLEQHGTPRHPHELAQHQIISYSYNHGKDEWQFSGPEGPVSVRVNARMHVNNGDSCVQ 180 P YL+ HGTP+HP ELA H +ISYSY KDEW F GP GPVSV+ N +H NNGD+C Sbjct: 169 PQYLKLHGTPKHPGELADHAVISYSYWSTKDEWPFKGPLGPVSVKTNPCIHTNNGDTCRA 228 Query: 181 AALGGIGITRQPTFMIDQYLRSGQLVPLLTDYTVPDLGIYAVYPSRAHLPAKVRAMLDFL 240 AAL GI QP+F++ L SG LV L+ ++ +LGIYAVYPSR H+ KVRA++DFL Sbjct: 229 AALASQGIILQPSFLVGDDLASGALVELMPEFRSLELGIYAVYPSRKHVSPKVRALIDFL 288 Query: 241 SEAFAQ 246 + F+Q Sbjct: 289 TNHFSQ 294 >ref|ZP_01894954.1| transcriptional regulator, LysR family protein [Marinobacter algicola DG893] gb|EDM46979.1| transcriptional regulator, LysR family protein [Marinobacter algicola DG893] Length = 296 Score = 278 bits (710), Expect = 8e-73, Method: Composition-based stats. Identities = 131/247 (53%), Positives = 177/247 (71%) Query: 1 MQRTTRRLSLTEAGSLYLERCKQIVAALEEADDLLLAGSAKPAGLLRINAPVTFGILHLA 60 + RTTRRLSLT G ++ RC++++A +EEA+ L + S G+LRINAPV+FGI HLA Sbjct: 49 LHRTTRRLSLTAEGEVFYVRCRELLAGVEEAEAELTSRSGVAKGVLRINAPVSFGIRHLA 108 Query: 61 PLWPIFLERHPEVELDITLSDRIVDIIDEGYDLAIRIARLADSTLIHRKLTSTSLPICAS 120 PLW F +P VEL+I LSDRIVDI++EG+DLAIRIA L +STL+ R+LT+T L +CAS Sbjct: 109 PLWGQFHSEYPNVELNIDLSDRIVDIVEEGFDLAIRIASLRNSTLVSRRLTTTRLVVCAS 168 Query: 121 PGYLEQHGTPRHPHELAQHQIISYSYNHGKDEWQFSGPEGPVSVRVNARMHVNNGDSCVQ 180 P YL HGTP HP +L H+II+YS ++W F GP+GP+S R+ MH NNG++C Sbjct: 169 PEYLSAHGTPEHPGDLIHHKIIAYSNLATGNDWHFDGPDGPLSTRIRPWMHANNGETCCA 228 Query: 181 AALGGIGITRQPTFMIDQYLRSGQLVPLLTDYTVPDLGIYAVYPSRAHLPAKVRAMLDFL 240 AA+ G G+ QP+F++ L +G+LV L+ DY +LG+YAVYP+R + KVRA++DFL Sbjct: 229 AAVAGQGVIHQPSFLVQDDLDAGRLVELMPDYRSDELGVYAVYPTRKFVTPKVRALVDFL 288 Query: 241 SEAFAQV 247 AF V Sbjct: 289 VSAFPDV 295